Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold145G36053 Striga asiatica HOM05D005972 ORTHO05D007548 2.8e-216 755.0 379 100.0
MSTRG.27825 Avicennia marina HOM05D005972 ORTHO05D007548 3.8e-173 611.7 379 78.4
Migut.N01012 Erythranthe guttata HOM05D005972 ORTHO05D007548 3.7e-168 595.1 381 77.4
Oeu017286.1 Olea europaea HOM05D005972 ORTHO05D007548 1.7e-160 569.7 377 74.0
SalBow6G6672 Salvia bowleyana HOM05D005972 ORTHO05D007548 8.1e-155 550.8 427 66.7
Rhsim05G0111400 Rhododendron simsii HOM05D005972 ORTHO05D007548 1.9e-148 529.6 374 69.0
Gohir.A06G170300 Gossypium hirsutum HOM05D005972 ORTHO05D007548 4.7e-147 525.0 378 67.2
Lj9A317T77 Lonicera japonica HOM05D005972 ORTHO05D007548 2.0e-145 519.6 376 67.3
CSS0039579 Camellia sinensis var. sinensis HOM05D005972 ORTHO05D007548 2.6e-145 519.2 379 67.5
Gorai.N007100 Gossypium raimondii HOM05D005972 ORTHO05D007548 4.4e-145 518.5 378 66.7
Nitab4.5_0012898g0010 Nicotiana tabacum HOM05D005972 ORTHO05D007548 7.6e-145 517.7 376 66.0
Gohir.D06G178100 Gossypium hirsutum HOM05D005972 ORTHO05D007548 1.7e-144 516.5 378 66.1
Manes.16G061300 Manihot esculenta HOM05D005972 ORTHO05D007548 4.9e-144 515.0 379 66.0
vmacro19910 Vaccinium macrocarpon HOM05D005972 ORTHO05D007548 8.4e-144 514.2 377 67.6
Nitab4.5_0000718g0290 Nicotiana tabacum HOM05D005972 ORTHO05D007548 1.9e-143 513.1 376 65.7
MD13G1062400 Malus domestica HOM05D005972 ORTHO05D007548 2.1e-142 509.6 376 66.5
Prupe.1G287600 Prunus persica HOM05D005972 ORTHO05D007548 3.5e-142 508.8 373 67.0
COL.COLO4_27930 Corchorus olitorius HOM05D005972 ORTHO05D007548 1.7e-141 506.5 380 65.3
TWI73G1071 Tripterygium wilfordii HOM05D005972 ORTHO05D007548 1.7e-141 506.5 379 64.9
Cfa019136 Carpinus fangiana HOM05D005972 ORTHO05D007548 3.0e-141 505.8 376 64.1
Thecc.10G118600 Theobroma cacao HOM05D005972 ORTHO05D007548 3.9e-141 505.4 378 64.6
CAN.G1513.3 Capsicum annuum HOM05D005972 ORTHO05D007548 5.1e-141 505.0 379 65.2
Cpa.g.sc36.20 Carica papaya HOM05D005972 ORTHO05D007548 6.6e-141 504.6 377 65.3
Dinv24228 Davidia involucrata HOM05D001691 ORTHO05D007548 6.6e-141 504.6 361 68.7
RcHm_v2.0_Chr4g0438261 Rosa chinensis HOM05D005972 ORTHO05D007548 8.6e-141 504.2 373 65.7
Sopen11g002990 Solanum pennellii HOM05D005972 ORTHO05D007548 3.3e-140 502.3 376 65.4
Atru.chr12.548 Acer truncatum HOM05D005972 ORTHO05D007548 7.3e-140 501.1 373 64.6
Solyc11g007070.2 Solanum lycopersicum HOM05D005972 ORTHO05D007548 4.7e-139 498.4 376 65.2
Duzib106G0263 Durio zibethinus HOM05D005972 ORTHO05D007548 1.8e-138 496.5 378 63.2
Thecc.04G023500 Theobroma cacao HOM05D005972 ORTHO05D007548 2.4e-138 496.1 378 64.0
CiPaw.11G025800 Carya illinoinensis HOM05D005972 ORTHO05D007548 5.2e-138 495.0 376 63.6
Eucgr.H00021 Eucalyptus grandis HOM05D005972 ORTHO05D007548 5.2e-138 495.0 380 63.7
ClCG05G021510 Citrullus lanatus HOM05D005972 ORTHO05D007548 9.0e-138 494.2 380 63.7
Actinidia28072 Actinidia chinensis HOM05D005972 ORTHO05D007548 2.0e-137 493.0 374 65.0
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 2.0e-137 493.0 373 64.3
FvH4_4g29980 Fragaria vesca HOM05D005972 ORTHO05D007548 9.9e-137 490.7 373 64.1
FAN22G0246 Fragaria x ananassa HOM05D005972 ORTHO05D007548 2.2e-136 489.6 373 64.1
Lsat_1_v5_gn_7_80540 Lactuca sativa HOM05D005972 ORTHO05D007548 2.9e-136 489.2 377 62.9
Lalb_Chr12g0208521 Lupinus albus HOM05D005972 ORTHO05D007548 3.8e-136 488.8 378 64.6
QL04p050517 Quercus lobata HOM05D005972 ORTHO05D007548 3.8e-136 488.8 429 57.8
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 8.4e-136 487.6 373 63.3
Potri.001G222400 Populus trichocarpa HOM05D005972 ORTHO05D007548 1.1e-135 487.3 377 64.2
arahy.Tifrunner.gnm1.ann1.41EE5L Arachis hypogaea HOM05D005972 ORTHO05D007548 2.1e-134 483.0 378 63.5
Sed0010539 Sechium edule HOM05D005972 ORTHO05D007548 2.7e-134 482.6 380 63.2
arahy.Tifrunner.gnm1.ann1.UKM804 Arachis hypogaea HOM05D005972 ORTHO05D007548 6.0e-134 481.5 378 63.2
Lj4g0025997 Lotus japonicus HOM05D005972 ORTHO05D007548 7.8e-134 481.1 378 63.2
Ciclev10031864m.g Citrus clementina HOM05D005972 ORTHO05D007548 2.3e-133 479.6 374 62.3
HanXRQChr11g0337671 Helianthus annuus HOM05D005972 ORTHO05D007548 3.0e-133 479.2 377 62.1
CsaV3_5G035730 Cucumis sativus L. HOM05D005972 ORTHO05D007548 1.9e-132 476.5 380 61.6
GSVIVG01020853001 Vitis vinifera HOM05D005972 ORTHO05D007548 4.3e-132 475.3 373 63.0
Ca_18332_v3 Cicer arietinum L. HOM05D005972 ORTHO05D007548 4.8e-131 471.9 376 62.2
FAN17G2742 Fragaria x ananassa HOM05D005972 ORTHO05D007548 4.8e-131 471.9 388 60.6
MELO3C012375.2 Cucumis melo HOM05D005972 ORTHO05D007548 1.8e-130 469.9 380 61.1
Haze_07503 Corylus avellana HOM05D005972 ORTHO05D007548 2.4e-130 469.5 376 60.6
Glyma.05G120600 Glycine max HOM05D005972 ORTHO05D007548 1.2e-129 467.2 378 61.6
PGR142G0064 Punica granatum HOM05D005972 ORTHO05D007548 1.5e-129 466.8 379 62.3
Aa31LG9G2330 Aethionema arabicum HOM05D005972 ORTHO05D007548 5.8e-129 464.9 379 60.2
Medtr4g094305 Medicago truncatula HOM05D005972 ORTHO05D007548 5.8e-129 464.9 376 61.7
Psat0s2194g0120 Pisum sativum HOM05D005972 ORTHO05D007548 7.6e-129 464.5 377 61.3
TPR.G31487 Trifolium pratense HOM05D005972 ORTHO05D007548 1.7e-128 463.4 378 60.3
THA.LOC104808523 Tarenaya hassleriana HOM05D005972 ORTHO05D007548 2.2e-128 463.0 376 59.8
CANSAT80G0182 Cannabis sativa HOM05D005972 ORTHO05D007548 4.9e-128 461.8 377 59.2
Thhalv10025456m.g Eutrema salsugineum HOM05D005972 ORTHO05D007548 4.9e-128 461.8 382 58.1
AL7G40820 Arabidopsis lyrata HOM05D005972 ORTHO05D007548 8.4e-128 461.1 376 58.5
AT4G15010 Arabidopsis thaliana HOM05D005972 ORTHO05D007548 8.4e-128 461.1 376 58.8
EL10Ac5g12767 Beta vulgaris HOM05D005972 ORTHO05D007548 1.9e-127 459.9 379 59.4
Sc22g0000350 Simmondsia chinensis HOM05D005972 ORTHO05D007548 1.9e-127 459.9 380 60.8
Ah.12g057320 Amaranthus hybridus HOM05D005972 ORTHO05D007548 7.1e-127 458.0 378 59.8
BraA01t02169Z Brassica rapa HOM05D005972 ORTHO05D007548 7.1e-127 458.0 377 58.6
Carub.0007s2708 Capsella rubella HOM05D005972 ORTHO05D007548 1.6e-126 456.8 376 59.3
C01p28060 Brassica napus HOM05D005972 ORTHO05D007548 2.7e-126 456.1 377 58.4
BcaC09g50180 Brassica carinata HOM05D005972 ORTHO05D007548 3.5e-126 455.7 377 58.6
BolC1t02740H Brassica oleracea HOM05D005972 ORTHO05D007548 3.5e-126 455.7 377 58.6
CARHR221700 Cardamine hirsuta HOM05D005972 ORTHO05D007548 3.5e-126 455.7 379 57.8
A01p22560 Brassica napus HOM05D005972 ORTHO05D007548 4.6e-126 455.3 377 58.4
Glyma.08G075400 Glycine max HOM05D005972 ORTHO05D007548 6.0e-126 454.9 378 60.6
BcaNung00313 Brassica carinata HOM05D005972 ORTHO05D007548 7.9e-126 454.5 377 58.4
BcaB02g07844 Brassica carinata HOM05D005972 ORTHO05D007548 1.0e-125 454.1 378 57.7
MD16G1060700 Malus domestica HOM05D005972 ORTHO05D007548 5.1e-125 451.8 363 62.5
VMungo0251G2526 Vigna mungo HOM05D005972 ORTHO05D007548 1.3e-123 447.2 400 57.5
PSO782G4197 Papaver somniferum HOM05D005972 ORTHO05D007548 2.4e-122 443.0 374 57.8
PSO063G2120 Papaver somniferum HOM05D005972 ORTHO05D007548 1.2e-121 440.7 374 57.5
Phvul.002G206200 Phaseolus vulgaris HOM05D005972 ORTHO05D007548 4.6e-118 428.7 378 58.2
Aqoxy4G02449 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 3.3e-116 422.5 405 54.3
CDE04G1870 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 1.1e-114 417.5 379 54.1
Peaxi162Scf00152g01221 Petunia axillaris HOM05D005972 ORTHO05D007548 1.8e-114 416.8 376 55.6
ATR0594G009 Amborella trichopoda HOM05D005972 ORTHO05D007548 1.1e-111 407.5 374 55.3
DCAR_006139 Daucus carota HOM05D005972 ORTHO05D007548 5.5e-111 405.2 316 62.7
HPP92_021056 Vanilla planifolia HOM05D005972 ORTHO05D007548 6.0e-110 401.7 371 53.4
unitig_747.g21237 Utricularia gibba HOM05D005972 ORTHO05D007548 8.7e-109 397.9 407 54.3
MBI03_g03956_MAGBIO Magnolia biondii HOM05D005972 ORTHO05D007548 1.9e-108 396.7 375 54.7
ATR0174G007 Amborella trichopoda HOM05D005972 ORTHO05D007548 2.8e-107 392.9 386 54.7
Nn6g35524 Nelumbo nucifera HOM05D005972 ORTHO05D007548 1.7e-104 383.6 377 52.8
ECA236G4176 Erigeron canadensis HOM05D005972 ORTHO05D007548 1.1e-95 354.4 267 63.3
Zm00001eb427070 Zea mays HOM05D005972 ORTHO05D007548 2.7e-94 349.7 371 48.8
Sabra16G0132100 Salix brachista HOM05D005972 ORTHO05D007548 1.2e-89 334.3 271 60.5
SEGI_29488 Sequoiadendron giganteum HOM05D005972 ORTHO05D007548 2.2e-88 330.1 377 42.2
SHI11404 Sapria himalayana HOM05D005972 ORTHO05D007548 2.4e-82 310.1 276 57.6
Mapoly0188s0014 Marchantia polymorpha HOM05D005972 ORTHO05D007548 2.4e-74 283.5 360 42.8
Cc02_g21900 Coffea canephora HOM05D005972 ORTHO05D007548 2.7e-73 280.0 188 68.1
COL.COLO4_10011 Corchorus olitorius HOM05D005972 ORTHO05D007548 4.5e-73 279.3 264 55.7
Pp3c15_20500 Physcomitrium patens HOM05D005972 ORTHO05D007548 2.0e-68 263.8 376 38.0
C06p16620 Brassica napus HOM05D005972 ORTHO05D007548 1.4e-45 188.0 220 46.4
BolC6t36864H Brassica oleracea HOM05D005972 ORTHO05D007548 1.4e-45 188.0 220 46.4
A05p16900 Brassica napus HOM05D005972 ORTHO05D007548 3.7e-43 179.9 139 61.9
Sp7g13170 Schrenkiella parvula HOM05D005972 ORTHO05D007548 8.3e-43 178.7 162 54.9
Cc02_g21910 Coffea canephora HOM05D005972 ORTHO05D007548 2.4e-42 177.2 135 67.4
Aqoxy3G01225 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 1.6e-41 174.5 166 53.0
SpUn0490_0010 Schrenkiella parvula HOM05D005972 ORTHO05D007548 1.0e-40 171.8 121 65.3
BcaC08g44257 Brassica carinata HOM05D005972 ORTHO05D024007 8.9e-37 158.7 160 51.9
Os04g0527500 Oryza sativa ssp. japonica HOM05D005972 ORTHO05D007548 2.9e-35 153.7 124 60.5
BraA05t20595Z Brassica rapa HOM05D005972 ORTHO05D007548 8.9e-29 132.1 366 30.3
HanXRQChr15g0481161 Helianthus annuus HOM05D005972 ORTHO05D007548 1.3e-27 128.3 117 53.0
CAN.G730.4 Capsicum annuum HOM05D005972 ORTHO05D007548 1.4e-26 124.8 211 38.9
CAN.G730.17 Capsicum annuum HOM05D005972 ORTHO05D007548 7.3e-23 112.5 109 56.0
CSS0032497 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D007548 3.1e-21 107.1 120 50.0
CBR_g51824 Chara braunii HOM05D005972 ORTHO05D007548 6.4e-19 99.4 351 25.6
CSS0030864 Camellia sinensis var. sinensis HOM05D000451 ORTHO05D000351 7.3e-15 85.9 112 46.4
A05p16910 Brassica napus HOM05D005972 ORTHO05D007548 1.8e-13 81.3 57 64.9
COL.COLO4_10012 Corchorus olitorius HOM05D005972 ORTHO05D007548 9.9e-12 75.5 73 57.5
CAN.G730.12 Capsicum annuum HOM05D005972 ORTHO05D007548 1.7e-11 74.7 50 72.0
Zm00001eb076720 Zea mays HOM05D005972 ORTHO05D007548 2.9e-11 73.9 111 40.5
CAN.G730.21 Capsicum annuum HOM05D005972 ORTHO05D007548 3.8e-11 73.6 52 71.2
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 2.7e-09 67.4 42 76.2
arahy.Tifrunner.gnm1.ann1.03MD5J Arachis hypogaea HOM05D000575 ORTHO05D011349 1.0e-08 65.5 78 46.2
arahy.Tifrunner.gnm1.ann1.9A5XZY Arachis hypogaea HOM05D005972 ORTHO05D031493 1.3e-08 65.1 81 48.1
arahy.Tifrunner.gnm1.ann1.YJH68W Arachis hypogaea HOM05D005972 ORTHO05D083016 3.9e-08 63.5 44 68.2
CAN.G1940.2 Capsicum annuum HOM05D005972 ORTHO05D007548 1.5e-07 61.6 51 54.9
Rhsim12G0198700 Rhododendron simsii HOM05D001142 ORTHO05D004628 1.5e-07 61.6 113 34.5
CANSAT01G0735 Cannabis sativa HOM05D001367 ORTHO05D005289 3.3e-07 60.5 312 24.7
TAR636G0809 Trochodendron aralioides HOM05D000883 ORTHO05D002942 3.3e-07 60.5 112 33.9
Manes.01G140400 Manihot esculenta HOM05D001367 ORTHO05D005289 9.6e-07 58.9 303 23.1
Actinidia24751 Actinidia chinensis HOM05D001142 ORTHO05D004628 1.3e-06 58.5 227 22.9
PSO063G2835 Papaver somniferum HOM05D001142 ORTHO05D004628 1.3e-06 58.5 364 22.3
AagrBONN_evm.TU.Sc2ySwM_362.2564 Anthoceros agrestis HOM05D001142 ORTHO05D004628 2.8e-06 57.4 286 21.7
AL8G45150 Arabidopsis lyrata HOM05D001367 ORTHO05D005289 3.7e-06 57.0 349 23.8
Manes.11G045200 Manihot esculenta HOM05D001142 ORTHO05D004628 4.8e-06 56.6 128 32.0
Sed0016744 Sechium edule HOM05D001142 ORTHO05D004628 4.8e-06 56.6 117 29.9
Thecc.01G027000 Theobroma cacao HOM05D001367 ORTHO05D005289 4.8e-06 56.6 350 23.4
vmacro16956 Vaccinium macrocarpon HOM05D001142 ORTHO05D004628 4.8e-06 56.6 113 31.0
Glyma.13G358800 Glycine max HOM05D001142 ORTHO05D004628 6.2e-06 56.2 261 23.0
Gohir.A10G096600 Gossypium hirsutum HOM05D001367 ORTHO05D005289 6.2e-06 56.2 342 23.1
PSO782G1702 Papaver somniferum HOM05D001142 ORTHO05D004628 6.2e-06 56.2 364 21.4
unitig_61.g26315 Utricularia gibba HOM05D000406 ORTHO05D008572 6.2e-06 56.2 134 29.9
VMungo1383G2682 Vigna mungo HOM05D000177 ORTHO05D002752 6.2e-06 56.2 168 26.8
QL05p022739 Quercus lobata HOM05D001142 ORTHO05D004628 8.1e-06 55.8 113 31.0


User provided reference genes

Program Settings