Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold144G35920 Striga asiatica HOM05D000072 ORTHO05D000717 5.9e-67 257.3 121 100.0
SGA_v2.0_scaffold43G16429 Striga asiatica HOM05D000354 ORTHO05D000717 1.5e-25 119.8 81 70.4
SGA_v2.0_scaffold43G16435 Striga asiatica HOM05D000072 ORTHO05D000026 4.0e-23 111.7 79 68.4
SGA_v2.0_scaffold111G31489 Striga asiatica HOM05D000354 ORTHO05D000717 3.6e-16 88.6 80 53.8
MSTRG.1910 Avicennia marina HOM05D000072 ORTHO05D000026 1.1e-12 77.0 79 44.3
Migut.E00875 Erythranthe guttata HOM05D000072 ORTHO05D000026 5.4e-12 74.7 78 48.7
SalBow1G5170 Salvia bowleyana HOM05D000354 ORTHO05D000717 3.3e-09 65.5 74 45.9
SalBow2G0583 Salvia bowleyana HOM05D000354 ORTHO05D000717 3.3e-09 65.5 75 41.3
Duzib205G0117 Durio zibethinus HOM05D000072 ORTHO05D000026 5.6e-09 64.7 75 45.3
Sabra15G0013600 Salix brachista HOM05D000354 ORTHO05D000026 7.3e-09 64.3 66 50.0
Migut.E01743 Erythranthe guttata HOM05D000354 ORTHO05D000717 9.5e-09 63.9 73 45.2
Migut.E01758 Erythranthe guttata HOM05D000072 ORTHO05D000026 9.5e-09 63.9 73 45.2
CSS0004351 Camellia sinensis var. sinensis HOM05D000072 ORTHO05D000026 1.2e-08 63.5 72 38.9
CSS0020324 Camellia sinensis var. sinensis HOM05D000354 ORTHO05D000717 1.6e-08 63.2 74 44.6
CSS0021311 Camellia sinensis var. sinensis HOM05D000354 ORTHO05D000717 1.6e-08 63.2 74 44.6
Migut.E01610 Erythranthe guttata HOM05D000072 ORTHO05D000026 1.6e-08 63.2 73 43.8
Migut.E01611 Erythranthe guttata HOM05D000354 ORTHO05D000717 1.6e-08 63.2 73 42.5
FAN12G4148 Fragaria x ananassa HOM05D000354 ORTHO05D000717 2.1e-08 62.8 69 46.4
Peaxi162Scf00032g00419 Petunia axillaris HOM05D000072 ORTHO05D000026 2.8e-08 62.4 79 39.2
Rhsim03G0206600 Rhododendron simsii HOM05D000072 ORTHO05D000026 2.8e-08 62.4 80 42.5
CSS0028470 Camellia sinensis var. sinensis HOM05D000072 ORTHO05D000026 3.6e-08 62.0 72 38.9
Duzib068G0316 Durio zibethinus HOM05D000072 ORTHO05D000026 3.6e-08 62.0 75 44.0
Migut.E01703 Erythranthe guttata HOM05D000072 ORTHO05D000026 3.6e-08 62.0 73 43.8
Migut.E01730 Erythranthe guttata HOM05D000072 ORTHO05D000026 3.6e-08 62.0 78 44.9
Potri.015G018000 Populus trichocarpa HOM05D000072 ORTHO05D000026 3.6e-08 62.0 73 42.5
Solyc02g081480.4 Solanum lycopersicum HOM05D000072 ORTHO05D000026 3.6e-08 62.0 80 38.8
Sopen02g026120 Solanum pennellii HOM05D000072 ORTHO05D000026 3.6e-08 62.0 80 37.5
PGSC0003DMG400019725 Solanum tuberosum HOM05D000072 ORTHO05D000026 3.6e-08 62.0 80 43.8
Manes.11G116300 Manihot esculenta HOM05D000072 ORTHO05D000026 4.7e-08 61.6 82 41.5
Migut.E00873 Erythranthe guttata HOM05D000072 ORTHO05D000026 8.1e-08 60.8 73 41.1
Sopen02g026140 Solanum pennellii HOM05D000072 ORTHO05D000026 8.1e-08 60.8 77 37.7
Peaxi162Scf00450g00004 Petunia axillaris HOM05D000072 ORTHO05D000026 1.1e-07 60.5 77 40.3
Sabra15G0013800 Salix brachista HOM05D000354 ORTHO05D000717 1.1e-07 60.5 77 44.2
Migut.E01623 Erythranthe guttata HOM05D000072 ORTHO05D000026 1.4e-07 60.1 78 41.0
RcHm_v2.0_Chr1g0333431 Rosa chinensis HOM05D000072 ORTHO05D000026 1.4e-07 60.1 66 45.5
Thecc.03G195300 Theobroma cacao HOM05D000072 ORTHO05D000026 1.4e-07 60.1 75 41.3
Migut.E01745 Erythranthe guttata HOM05D000072 ORTHO05D000026 1.8e-07 59.7 78 42.3
PSO384G4512 Papaver somniferum HOM05D000354 ORTHO05D000717 1.8e-07 59.7 69 39.1
Dinv29301 Davidia involucrata HOM05D000354 ORTHO05D000717 2.3e-07 59.3 75 40.0
Migut.E01724 Erythranthe guttata HOM05D000072 ORTHO05D000026 2.3e-07 59.3 73 42.5
Manes.14G006972 Manihot esculenta HOM05D000072 ORTHO05D000026 2.3e-07 59.3 77 36.4
Peaxi162Scf00032g00007 Petunia axillaris HOM05D000072 ORTHO05D000026 2.3e-07 59.3 78 42.3
RcHm_v2.0_Chr5g0047981 Rosa chinensis HOM05D000072 ORTHO05D000026 2.3e-07 59.3 76 35.5
Thecc.10G099600 Theobroma cacao HOM05D000072 ORTHO05D000026 2.3e-07 59.3 74 36.5
Thecc.10G099900 Theobroma cacao HOM05D000072 ORTHO05D000026 2.3e-07 59.3 74 36.5
Thecc.K0005400 Theobroma cacao HOM05D000354 ORTHO05D000026 2.3e-07 59.3 74 36.5
Thecc.K0005500 Theobroma cacao HOM05D000072 ORTHO05D000026 2.3e-07 59.3 74 36.5
Thecc.K0005600 Theobroma cacao HOM05D000072 ORTHO05D000026 2.3e-07 59.3 74 36.5
Migut.E00878 Erythranthe guttata HOM05D000072 ORTHO05D000026 3.1e-07 58.9 72 40.3
Migut.E01707 Erythranthe guttata HOM05D000072 ORTHO05D000026 3.1e-07 58.9 73 39.7
Potri.012G003000 Populus trichocarpa HOM05D000072 ORTHO05D000026 4.0e-07 58.5 69 46.4
Thecc.10G099300 Theobroma cacao HOM05D000072 ORTHO05D000026 4.0e-07 58.5 74 36.5
Gohir.D05G290300 Gossypium hirsutum HOM05D000072 ORTHO05D000026 5.2e-07 58.2 69 37.7
Gorai.009G305400 Gossypium raimondii HOM05D000072 ORTHO05D000026 5.2e-07 58.2 69 37.7
Peaxi162Scf00344g00182 Petunia axillaris HOM05D000072 ORTHO05D000026 5.2e-07 58.2 77 39.0
CSS0002832 Camellia sinensis var. sinensis HOM05D000354 ORTHO05D000717 6.8e-07 57.8 74 43.2
Migut.E01624 Erythranthe guttata HOM05D000354 ORTHO05D000717 6.8e-07 57.8 67 41.8
Migut.E01733 Erythranthe guttata HOM05D000072 ORTHO05D000026 6.8e-07 57.8 78 39.7
Gohir.D05G290400 Gossypium hirsutum HOM05D000072 ORTHO05D000026 6.8e-07 57.8 66 39.4
Gorai.009G305500 Gossypium raimondii HOM05D000072 ORTHO05D000026 6.8e-07 57.8 66 39.4
Nitab4.5_0000023g0740 Nicotiana tabacum HOM05D000072 ORTHO05D000026 6.8e-07 57.8 71 40.8
Nitab4.5_0000825g0090 Nicotiana tabacum HOM05D000072 ORTHO05D000026 6.8e-07 57.8 71 40.8
Duzib114G0292 Durio zibethinus HOM05D000072 ORTHO05D000026 8.9e-07 57.4 74 36.5
Lj3A346T24 Lonicera japonica HOM05D000354 ORTHO05D000717 8.9e-07 57.4 83 34.9
Rhsim03G0206900 Rhododendron simsii HOM05D000072 ORTHO05D000026 8.9e-07 57.4 77 39.0
RcHm_v2.0_Chr5g0047571 Rosa chinensis HOM05D000072 ORTHO05D000026 8.9e-07 57.4 99 35.4
Migut.E00865 Erythranthe guttata HOM05D000354 ORTHO05D000717 1.2e-06 57.0 72 41.7
Lj3C352G3 Lonicera japonica HOM05D000072 ORTHO05D000026 1.2e-06 57.0 85 32.9
Nitab4.5_0001747g0070 Nicotiana tabacum HOM05D000072 ORTHO05D000026 1.2e-06 57.0 76 39.5
Rhsim03G0203800 Rhododendron simsii HOM05D000072 ORTHO05D000026 1.2e-06 57.0 74 41.9
GSVIVG01001021001 Vitis vinifera HOM05D000354 ORTHO05D000717 1.2e-06 57.0 99 31.3
Migut.C00057 Erythranthe guttata HOM05D000072 ORTHO05D000026 1.5e-06 56.6 73 39.7
Gohir.A05G289100 Gossypium hirsutum HOM05D000072 ORTHO05D000026 1.5e-06 56.6 66 37.9
Nn2g15081 Nelumbo nucifera HOM05D000072 ORTHO05D000026 1.5e-06 56.6 73 41.1
Peaxi162Scf00032g00422 Petunia axillaris HOM05D000072 ORTHO05D000026 1.5e-06 56.6 73 39.7
PGSC0003DMG400019726 Solanum tuberosum HOM05D000072 ORTHO05D000026 1.5e-06 56.6 74 37.8
Migut.E00898 Erythranthe guttata HOM05D000072 ORTHO05D000026 2.0e-06 56.2 72 38.9
Migut.E01759 Erythranthe guttata HOM05D000072 ORTHO05D000026 2.0e-06 56.2 69 39.1
Lj3A399T6 Lonicera japonica HOM05D000354 ORTHO05D000717 2.0e-06 56.2 80 36.2
RcHm_v2.0_Chr5g0047611 Rosa chinensis HOM05D000072 ORTHO05D000026 2.0e-06 56.2 96 33.3
Thecc.05G200100 Theobroma cacao HOM05D000354 ORTHO05D000717 2.0e-06 56.2 68 42.6
CSS0010548 Camellia sinensis var. sinensis HOM05D000072 ORTHO05D000026 2.6e-06 55.8 81 44.4
CSS0021070 Camellia sinensis var. sinensis HOM05D000354 ORTHO05D000717 2.6e-06 55.8 76 42.1
CAN.G809.89 Capsicum annuum HOM05D000072 ORTHO05D000026 2.6e-06 55.8 65 41.5
COL.COLO4_35609 Corchorus olitorius HOM05D000354 ORTHO05D000717 2.6e-06 55.8 73 35.6
Duzib114G0415 Durio zibethinus HOM05D000072 ORTHO05D000026 2.6e-06 55.8 74 35.1
Lj3C344T9 Lonicera japonica HOM05D000354 ORTHO05D000717 2.6e-06 55.8 80 36.2
Lj3C398T6 Lonicera japonica HOM05D000072 ORTHO05D000026 2.6e-06 55.8 80 36.2
Rhsim03G0203600 Rhododendron simsii HOM05D000072 ORTHO05D000026 2.6e-06 55.8 80 38.8
HanXRQChr03g0083531 Helianthus annuus HOM05D000354 ORTHO05D000717 3.4e-06 55.5 73 39.7
Lj3C361G6 Lonicera japonica HOM05D000072 ORTHO05D000026 3.4e-06 55.5 80 35.0
Nitab4.5_0000108g0070 Nicotiana tabacum HOM05D000072 ORTHO05D000026 3.4e-06 55.5 64 43.8
Rhsim03G0203000 Rhododendron simsii HOM05D000072 ORTHO05D000026 3.4e-06 55.5 74 41.9
Rhsim03G0205300 Rhododendron simsii HOM05D000072 ORTHO05D000026 3.4e-06 55.5 80 40.0
Thecc.03G195400 Theobroma cacao HOM05D000354 ORTHO05D000717 3.4e-06 55.5 74 39.2
vmacro06551 Vaccinium macrocarpon HOM05D000072 ORTHO05D000026 3.4e-06 55.5 84 38.1
Migut.E01753 Erythranthe guttata HOM05D000072 ORTHO05D000026 4.4e-06 55.1 78 42.3
Migut.E01762 Erythranthe guttata HOM05D000072 ORTHO05D000026 4.4e-06 55.1 68 39.7
Lj5C552G2 Lonicera japonica HOM05D000354 ORTHO05D000717 4.4e-06 55.1 77 37.7
RcHm_v2.0_Chr5g0048061 Rosa chinensis HOM05D000072 ORTHO05D000026 4.4e-06 55.1 93 34.4
CiPaw.04G095900 Carya illinoinensis HOM05D000072 ORTHO05D000026 5.8e-06 54.7 79 34.2
COL.COLO4_35604 Corchorus olitorius HOM05D000354 ORTHO05D000717 5.8e-06 54.7 70 35.7
Migut.E01187 Erythranthe guttata HOM05D000072 ORTHO05D000026 5.8e-06 54.7 72 38.9
Lj8C425G3 Lonicera japonica HOM05D000072 ORTHO05D000026 5.8e-06 54.7 80 35.0
Oeu034334.1 Olea europaea HOM05D000354 ORTHO05D000717 5.8e-06 54.7 69 36.2
PGSC0003DMG400010495 Solanum tuberosum HOM05D000072 ORTHO05D000026 5.8e-06 54.7 71 40.8
Lj3A373G13 Lonicera japonica HOM05D000072 ORTHO05D000717 7.6e-06 54.3 78 32.1
Lj3C371G2 Lonicera japonica HOM05D000354 ORTHO05D000717 7.6e-06 54.3 78 32.1
Nitab4.5_0003580g0030 Nicotiana tabacum HOM05D000072 ORTHO05D000026 7.6e-06 54.3 76 38.2
Potri.012G002800 Populus trichocarpa HOM05D000072 ORTHO05D000026 9.9e-06 53.9 69 44.9
Rhsim03G0201600 Rhododendron simsii HOM05D000072 ORTHO05D000026 9.9e-06 53.9 73 41.1
Sopen01g004030 Solanum pennellii HOM05D000072 ORTHO05D000026 9.9e-06 53.9 74 41.9
Thecc.03G041800 Theobroma cacao HOM05D000072 ORTHO05D000026 9.9e-06 53.9 74 39.2


User provided reference genes

Program Settings