Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold144G35863 Striga asiatica HOM05D003770 ORTHO05D004424 8.6e-93 343.6 167 100.0
SGA_v2.0_scaffold111G31382 Striga asiatica HOM05D003770 ORTHO05D004424 1.7e-85 319.3 190 84.7
Oeu002044.1 Olea europaea HOM05D003770 ORTHO05D004424 3.6e-83 311.6 191 81.7
Aqoxy3G02118 Aquilegia oxysepala HOM05D003770 ORTHO05D004424 4.7e-83 311.2 191 82.2
SalBow1G3665 Salvia bowleyana HOM05D003770 ORTHO05D004424 1.4e-82 309.7 191 81.2
DCAR_008201 Daucus carota HOM05D003770 ORTHO05D004424 4.0e-82 308.1 191 80.6
Gohir.D12G207000 Gossypium hirsutum HOM05D003770 ORTHO05D004424 6.8e-82 307.4 191 81.2
Gorai.008G222400 Gossypium raimondii HOM05D003770 ORTHO05D004424 6.8e-82 307.4 191 81.2
Actinidia27273 Actinidia chinensis HOM05D003770 ORTHO05D004424 1.5e-81 306.2 191 80.1
HanXRQChr13g0404801 Helianthus annuus HOM05D003770 ORTHO05D004424 2.6e-81 305.4 191 79.1
Lsat_1_v5_gn_6_17740 Lactuca sativa HOM05D003770 ORTHO05D004424 2.6e-81 305.4 191 79.6
Duzib205G1159 Durio zibethinus HOM05D003770 ORTHO05D004424 3.4e-81 305.1 191 80.1
Gohir.A12G204600 Gossypium hirsutum HOM05D003770 ORTHO05D004424 3.4e-81 305.1 191 80.1
HanXRQChr02g0050031 Helianthus annuus HOM05D003770 ORTHO05D004424 4.4e-81 304.7 191 79.1
Nn3g19345 Nelumbo nucifera HOM05D003770 ORTHO05D004424 4.4e-81 304.7 191 80.1
Actinidia01337 Actinidia chinensis HOM05D003770 ORTHO05D000846 5.8e-81 304.3 191 78.5
Cpa.g.sc147.1 Carica papaya HOM05D003770 ORTHO05D004424 7.6e-81 303.9 191 80.1
ECA233G1784 Erigeron canadensis HOM05D003770 ORTHO05D004424 1.3e-80 303.1 191 78.5
Duzib084G1234 Durio zibethinus HOM05D003770 ORTHO05D004424 1.7e-80 302.8 191 80.1
Gohir.D03G177400 Gossypium hirsutum HOM05D003770 ORTHO05D004424 1.7e-80 302.8 191 79.1
Gorai.003G186600 Gossypium raimondii HOM05D003770 ORTHO05D004424 1.7e-80 302.8 191 79.1
Migut.E01330 Erythranthe guttata HOM05D003770 ORTHO05D004424 2.9e-80 302.0 191 78.5
Eucgr.D02625 Eucalyptus grandis HOM05D003770 ORTHO05D004424 2.9e-80 302.0 191 79.6
Gohir.A03G000019 Gossypium hirsutum HOM05D003770 ORTHO05D004424 2.9e-80 302.0 191 79.1
Hma1.2p1_0803F.1_g220690 Hydrangea macrophylla HOM05D003770 ORTHO05D004424 2.9e-80 302.0 191 79.6
Hma1.2p1_1137F.1_g260650 Hydrangea macrophylla HOM05D003770 ORTHO05D004424 2.9e-80 302.0 191 79.6
CSS0041235 Camellia sinensis var. sinensis HOM05D003770 ORTHO05D004424 3.8e-80 301.6 191 78.5
Duzib068G0068 Durio zibethinus HOM05D003770 ORTHO05D004424 3.8e-80 301.6 191 78.5
TWI81G0504 Tripterygium wilfordii HOM05D003770 ORTHO05D004424 3.8e-80 301.6 188 80.3
Carub.0001s3038 Capsella rubella HOM05D003770 ORTHO05D004424 4.9e-80 301.2 191 79.1
Lj8A318T48 Lonicera japonica HOM05D003770 ORTHO05D004424 4.9e-80 301.2 191 79.6
Nn1g01916 Nelumbo nucifera HOM05D003770 ORTHO05D004424 4.9e-80 301.2 191 78.5
Thecc.03G313800 Theobroma cacao HOM05D003770 ORTHO05D004424 4.9e-80 301.2 191 79.1
ECA240G0263 Erigeron canadensis HOM05D003770 ORTHO05D004424 6.4e-80 300.8 191 77.0
QL12p000321 Quercus lobata HOM05D003770 ORTHO05D004424 6.4e-80 300.8 191 79.6
Atru.chr6.1571 Acer truncatum HOM05D003770 ORTHO05D004424 8.4e-80 300.4 191 79.1
Aa31LG2G13940 Aethionema arabicum HOM05D003770 ORTHO05D004424 8.4e-80 300.4 191 79.1
Eucgr.E01261 Eucalyptus grandis HOM05D003770 ORTHO05D004424 8.4e-80 300.4 191 78.0
CARHR031410 Cardamine hirsuta HOM05D003770 ORTHO05D004424 1.1e-79 300.1 191 78.5
Thhalv10007801m.g Eutrema salsugineum HOM05D003770 ORTHO05D004424 1.1e-79 300.1 191 78.5
PSO063G0145 Papaver somniferum HOM05D003770 ORTHO05D004424 1.1e-79 300.1 191 79.6
PSO782G4140 Papaver somniferum HOM05D003770 ORTHO05D004424 1.1e-79 300.1 191 79.6
BcaC05g27231 Brassica carinata HOM05D003770 ORTHO05D004424 1.4e-79 299.7 191 78.5
C05p31460 Brassica napus HOM05D003770 ORTHO05D004424 1.4e-79 299.7 191 78.5
BolC5t31869H Brassica oleracea HOM05D003770 ORTHO05D004424 1.4e-79 299.7 191 78.5
A09p34110 Brassica napus HOM05D003770 ORTHO05D004424 1.9e-79 299.3 191 78.5
BraA09t38959Z Brassica rapa HOM05D003770 ORTHO05D004424 1.9e-79 299.3 191 78.5
PGR031G2638 Punica granatum HOM05D003770 ORTHO05D004424 1.9e-79 299.3 191 78.5
MD06G1023500 Malus domestica HOM05D003770 ORTHO05D004424 2.4e-79 298.9 191 78.5
Sabra03G0067500 Salix brachista HOM05D003770 ORTHO05D004424 2.4e-79 298.9 191 78.0
TAR374G0482 Trochodendron aralioides HOM05D003770 ORTHO05D004424 2.4e-79 298.9 191 79.1
A05p25300 Brassica napus HOM05D003770 ORTHO05D004424 3.2e-79 298.5 191 78.5
BraA05t21415Z Brassica rapa HOM05D003770 ORTHO05D004424 3.2e-79 298.5 191 78.5
CANSAT21G0558 Cannabis sativa HOM05D003770 ORTHO05D004424 3.2e-79 298.5 191 77.5
CANSAT21G0653 Cannabis sativa HOM05D003770 ORTHO05D004424 3.2e-79 298.5 191 77.5
CDE03G0017 Ceratophyllum demersum HOM05D003770 ORTHO05D004424 3.2e-79 298.5 190 77.4
ATR0829G012 Amborella trichopoda HOM05D003770 ORTHO05D004424 4.1e-79 298.1 190 76.8
BcaB07g32867 Brassica carinata HOM05D003770 ORTHO05D004424 4.1e-79 298.1 191 78.5
ClCG07G002220 Citrullus lanatus HOM05D003770 ORTHO05D004424 4.1e-79 298.1 191 77.0
FAN13G3207 Fragaria x ananassa HOM05D003770 ORTHO05D004424 4.1e-79 298.1 188 79.3
HanXRQChr03g0082041 Helianthus annuus HOM05D003770 ORTHO05D004424 4.1e-79 298.1 191 77.0
Manes.17G006674 Manihot esculenta HOM05D003770 ORTHO05D004424 4.1e-79 298.1 188 78.7
Sp1g27720 Schrenkiella parvula HOM05D003770 ORTHO05D004424 4.1e-79 298.1 191 78.0
MSTRG.11897 Avicennia marina HOM05D003770 ORTHO05D004424 5.4e-79 297.7 191 77.5
BcaC05g27932 Brassica carinata HOM05D003770 ORTHO05D004424 5.4e-79 297.7 191 78.0
C05p39370 Brassica napus HOM05D003770 ORTHO05D004424 5.4e-79 297.7 191 78.0
BolC5t32673H Brassica oleracea HOM05D003770 ORTHO05D004424 5.4e-79 297.7 191 78.0
CsaV3_3G030440 Cucumis sativus L. HOM05D003770 ORTHO05D004424 5.4e-79 297.7 191 77.0
DCAR_004263 Daucus carota HOM05D003770 ORTHO05D004424 5.4e-79 297.7 191 79.1
PGR042G3493 Punica granatum HOM05D003770 ORTHO05D004424 5.4e-79 297.7 191 77.0
AL1G46130 Arabidopsis lyrata HOM05D003770 ORTHO05D004424 7.1e-79 297.4 188 79.3
AT1G32060 Arabidopsis thaliana HOM05D003770 ORTHO05D004424 7.1e-79 297.4 188 79.3
CAN.G773.20 Capsicum annuum HOM05D003770 ORTHO05D004424 7.1e-79 297.4 191 77.5
Potri.001G134000 Populus trichocarpa HOM05D003770 ORTHO05D004424 7.1e-79 297.4 191 77.5
Sabra01G0103600 Salix brachista HOM05D003770 ORTHO05D004424 7.1e-79 297.4 191 77.5
MSTRG.25705 Avicennia marina HOM05D003770 ORTHO05D004424 9.2e-79 297.0 191 77.5
BcaB04g18001 Brassica carinata HOM05D003770 ORTHO05D004424 9.2e-79 297.0 191 78.0
A08p09370 Brassica napus HOM05D003770 ORTHO05D004424 9.2e-79 297.0 191 78.0
BraA08t32935Z Brassica rapa HOM05D003770 ORTHO05D004424 9.2e-79 297.0 191 78.0
FAN04G1074 Fragaria x ananassa HOM05D003770 ORTHO05D004424 9.2e-79 297.0 188 79.3
Lsat_1_v5_gn_6_73360 Lactuca sativa HOM05D003770 ORTHO05D004424 9.2e-79 297.0 191 76.4
Rhsim07G0134900 Rhododendron simsii HOM05D003770 ORTHO05D004424 9.2e-79 297.0 191 78.5
Solyc08g076220.3 Solanum lycopersicum HOM05D003770 ORTHO05D004424 9.2e-79 297.0 191 77.5
Sopen08g024860 Solanum pennellii HOM05D003770 ORTHO05D004424 9.2e-79 297.0 191 77.5
PGSC0003DMG400009317 Solanum tuberosum HOM05D003770 ORTHO05D004424 9.2e-79 297.0 191 77.5
TWI60G0039 Tripterygium wilfordii HOM05D003770 ORTHO05D004424 9.2e-79 297.0 188 79.8
Nitab4.5_0006395g0030 Nicotiana tabacum HOM05D003770 ORTHO05D004424 1.2e-78 296.6 191 77.0
GSVIVG01011555001 Vitis vinifera HOM05D003770 ORTHO05D004424 1.2e-78 296.6 191 76.4
Potri.003G099400 Populus trichocarpa HOM05D003770 ORTHO05D004424 1.6e-78 296.2 191 77.0
THA.LOC104798502 Tarenaya hassleriana HOM05D003770 ORTHO05D004424 1.6e-78 296.2 191 77.5
CDE06G1725 Ceratophyllum demersum HOM05D003770 ORTHO05D004424 2.1e-78 295.8 190 76.8
MBI04_g36021_MAGBIO Magnolia biondii HOM05D003770 ORTHO05D004424 2.1e-78 295.8 191 77.0
Prupe.5G024600 Prunus persica HOM05D003770 ORTHO05D004424 2.1e-78 295.8 191 78.5
Sc07g0008420 Simmondsia chinensis HOM05D003770 ORTHO05D004424 2.1e-78 295.8 191 77.5
arahy.Tifrunner.gnm1.ann1.6KVT94 Arachis hypogaea HOM05D003770 ORTHO05D004424 3.5e-78 295.0 191 77.0
arahy.Tifrunner.gnm1.ann1.8L38IN Arachis hypogaea HOM05D003770 ORTHO05D004424 3.5e-78 295.0 191 77.0
BolC8t48008H Brassica oleracea HOM05D003770 ORTHO05D004424 3.5e-78 295.0 191 77.5
Ciclev10001344m.g Citrus clementina HOM05D003770 ORTHO05D004424 3.5e-78 295.0 188 77.7
FvH4_5g23520 Fragaria vesca HOM05D003770 ORTHO05D004424 3.5e-78 295.0 188 78.7
FAN18G3344 Fragaria x ananassa HOM05D003770 ORTHO05D004424 3.5e-78 295.0 188 78.7
Glyma.09G210900 Glycine max HOM05D003770 ORTHO05D004424 3.5e-78 295.0 181 80.7
RcHm_v2.0_Chr7g0212791 Rosa chinensis HOM05D003770 ORTHO05D004424 3.5e-78 295.0 188 79.3
Hund14389 Selenicereus undatus HOM05D003770 ORTHO05D004424 3.5e-78 295.0 191 76.4
Zm00001eb251520 Zea mays HOM05D003770 ORTHO05D004424 3.5e-78 295.0 190 77.4
Manes.15G185100 Manihot esculenta HOM05D003770 ORTHO05D004424 4.6e-78 294.7 188 78.7
TPR.G9091 Trifolium pratense HOM05D003770 ORTHO05D004424 4.6e-78 294.7 191 76.4
unitig_748.g8135 Utricularia gibba HOM05D003770 ORTHO05D004424 4.6e-78 294.7 184 78.8
FAN18G4499 Fragaria x ananassa HOM05D003770 ORTHO05D004424 6.0e-78 294.3 188 78.7
Lj2g0001675 Lotus japonicus HOM05D003770 ORTHO05D004424 6.0e-78 294.3 191 76.4
Zm00001eb188120 Zea mays HOM05D003770 ORTHO05D004424 6.0e-78 294.3 190 76.8
VMungo1215G0689 Vigna mungo HOM05D003770 ORTHO05D004424 7.8e-78 293.9 181 80.1
EL10Ac5g11979 Beta vulgaris HOM05D003770 ORTHO05D004424 1.0e-77 293.5 190 76.8
BcaC07g37635 Brassica carinata HOM05D003770 ORTHO05D004424 1.0e-77 293.5 190 77.4
Glyma.01G010200 Glycine max HOM05D003770 ORTHO05D004424 1.0e-77 293.5 181 80.1
Sed0022644 Sechium edule HOM05D003770 ORTHO05D004424 1.0e-77 293.5 184 78.8
unitig_32.g10970 Utricularia gibba HOM05D003770 ORTHO05D004424 1.0e-77 293.5 192 77.6
Actinidia14766 Actinidia chinensis HOM05D003770 ORTHO05D004424 1.3e-77 293.1 191 77.0
Lalb_Chr05g0215611 Lupinus albus HOM05D003770 ORTHO05D004424 1.3e-77 293.1 191 76.4
Lalb_Chr16g0380901 Lupinus albus HOM05D003770 ORTHO05D004424 1.3e-77 293.1 190 76.8
MD00G1068500 Malus domestica HOM05D003770 ORTHO05D004424 1.3e-77 293.1 188 78.2
Os02g0698000 Oryza sativa ssp. japonica HOM05D003770 ORTHO05D004424 1.3e-77 293.1 190 76.3
Ca_25153_v3 Cicer arietinum L. HOM05D003770 ORTHO05D004424 1.7e-77 292.7 191 75.9
Psat2g140680 Pisum sativum HOM05D003770 ORTHO05D004424 1.7e-77 292.7 191 75.9
CSS0008149 Camellia sinensis var. sinensis HOM05D003770 ORTHO05D004424 2.3e-77 292.4 190 77.4
CSS0016333 Camellia sinensis var. sinensis HOM05D003770 ORTHO05D004424 2.3e-77 292.4 190 77.4
Medtr5g027530 Medicago truncatula HOM05D003770 ORTHO05D004424 3.9e-77 291.6 191 75.4
CiPaw.12G070000 Carya illinoinensis HOM05D003770 ORTHO05D004424 5.1e-77 291.2 191 75.9
CDE02G1660 Ceratophyllum demersum HOM05D003770 ORTHO05D004424 8.6e-77 290.4 190 75.3
Sed0013554 Sechium edule HOM05D003770 ORTHO05D004424 1.5e-76 289.7 188 75.5
Cfa012551 Carpinus fangiana HOM05D003770 ORTHO05D004424 1.9e-76 289.3 191 75.4
AUR62018610 Chenopodium quinoa HOM05D003770 ORTHO05D004424 1.9e-76 289.3 191 74.9
Phvul.002G133100 Phaseolus vulgaris HOM05D003770 ORTHO05D004424 1.9e-76 289.3 181 79.0
Oeu061069.1 Olea europaea HOM05D003770 ORTHO05D004424 3.3e-76 288.5 221 68.3
vmacro22044 Vaccinium macrocarpon HOM05D003770 ORTHO05D004424 4.3e-76 288.1 212 70.3
ClCG10G001180 Citrullus lanatus HOM05D003770 ORTHO05D004424 5.6e-76 287.7 181 77.9
AUR62007378 Chenopodium quinoa HOM05D003770 ORTHO05D004424 7.3e-76 287.3 191 74.3
Cc08_g03960 Coffea canephora HOM05D003770 ORTHO05D004424 7.3e-76 287.3 191 75.9
CiPaw.11G100900 Carya illinoinensis HOM05D003770 ORTHO05D004424 1.2e-75 286.6 191 75.4
Nitab4.5_0000543g0160 Nicotiana tabacum HOM05D003770 ORTHO05D004424 1.2e-75 286.6 195 74.4
SEGI_11015 Sequoiadendron giganteum HOM05D003770 ORTHO05D004424 2.8e-75 285.4 190 74.7
Pp3c18_7120 Physcomitrium patens HOM05D003770 ORTHO05D004424 2.4e-74 282.3 192 74.0
AagrBONN_evm.TU.Sc2ySwM_117.3106 Anthoceros agrestis HOM05D003770 ORTHO05D004424 1.2e-73 280.0 185 73.5
Pp3c21_14450 Physcomitrium patens HOM05D003770 ORTHO05D004424 1.5e-73 279.6 192 73.4
Pp3c19_14070 Physcomitrium patens HOM05D003770 ORTHO05D004424 2.0e-73 279.3 192 72.9
Mapoly0012s0175 Marchantia polymorpha HOM05D003770 ORTHO05D004424 3.4e-73 278.5 190 73.2
CsaV3_3G001220 Cucumis sativus L. HOM05D003770 ORTHO05D004424 5.8e-73 277.7 190 72.1
THA.LOC104812730 Tarenaya hassleriana HOM05D003770 ORTHO05D004424 9.9e-73 276.9 187 72.7
MELO3C013811.2 Cucumis melo HOM05D003770 ORTHO05D004424 1.3e-72 276.6 185 74.1
SMO298G0021 Selaginella moellendorffii HOM05D003770 ORTHO05D004424 1.3e-72 276.6 191 73.3
Os04g0596900 Oryza sativa ssp. japonica HOM05D003770 ORTHO05D004424 9.3e-71 270.4 188 72.9
TAR697G0002 Trochodendron aralioides HOM05D003770 ORTHO05D004424 2.1e-70 269.2 190 68.4
TAR622G0569 Trochodendron aralioides HOM05D003770 ORTHO05D004424 2.3e-69 265.8 190 67.9
CBR_g39737 Chara braunii HOM05D003770 ORTHO05D004424 3.0e-69 265.4 179 71.5
Nitab4.5_0003152g0030 Nicotiana tabacum HOM05D003770 ORTHO05D004424 6.6e-69 264.2 188 71.8
PRCOL_00002010 Prasinoderma coloniale HOM05D003770 ORTHO05D004424 4.3e-68 261.5 179 72.1
Zm00001eb072030 Zea mays HOM05D003770 ORTHO05D004424 1.1e-66 256.9 182 70.3
CDE11G0445 Ceratophyllum demersum HOM05D003770 ORTHO05D004424 1.8e-66 256.1 189 68.3
MCO14G400 Micromonas commoda HOM05D003770 ORTHO05D004424 1.8e-66 256.1 178 70.2
Haze_08106 Corylus avellana HOM05D003770 ORTHO05D004424 4.0e-66 255.0 191 69.1
BcaB03g13770 Brassica carinata HOM05D003770 ORTHO05D004424 9.0e-66 253.8 172 73.8
Cre12.g554800 Chlamydomonas reinhardtii HOM05D003770 ORTHO05D004424 9.9e-65 250.4 177 68.9
GSVIVG01024410001 Vitis vinifera HOM05D003770 ORTHO05D004424 6.4e-64 247.7 178 68.5
Peaxi162Scf00879g00019 Petunia axillaris HOM05D003770 ORTHO05D004424 2.4e-63 245.7 167 74.3
FAN08G1257 Fragaria x ananassa HOM05D003770 ORTHO05D004424 4.6e-62 241.5 164 75.0
Dinv06903 Davidia involucrata HOM05D003770 ORTHO05D004424 2.5e-60 235.7 149 79.2
COL.COLO4_16898 Corchorus olitorius HOM05D003770 ORTHO05D004424 1.4e-55 219.9 170 69.4
SEGI_13950 Sequoiadendron giganteum HOM05D003770 ORTHO05D004424 2.1e-54 216.1 175 64.6
Actinidia24585 Actinidia chinensis HOM05D003770 ORTHO05D004424 4.6e-54 214.9 155 70.3
Nitab4.5_0001770g0170 Nicotiana tabacum HOM05D003770 ORTHO05D004424 1.0e-53 213.8 164 68.3
HPP92_020819 Vanilla planifolia HOM05D003770 ORTHO05D004424 1.0e-48 197.2 141 69.5
Dinv29028 Davidia involucrata HOM05D003770 ORTHO05D004424 1.1e-47 193.7 131 74.0
MELO3C026722.2 Cucumis melo HOM05D003770 ORTHO05D004424 2.5e-47 192.6 95 94.7
TAR629G0526 Trochodendron aralioides HOM05D003770 ORTHO05D004424 1.6e-46 189.9 95 93.7
Nitab4.5_0012388g0010 Nicotiana tabacum HOM05D000083 ORTHO05D000196 4.2e-39 165.2 135 67.4
SEGI_16838 Sequoiadendron giganteum HOM05D003770 ORTHO05D004424 1.8e-37 159.8 95 68.4
CDE11G0697 Ceratophyllum demersum HOM05D003770 ORTHO05D034257 1.9e-15 86.7 60 73.3
vmacro23512 Vaccinium macrocarpon HOM05D003770 ORTHO05D004424 8.0e-06 54.7 26 100.0


User provided reference genes

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