Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold144G35815 Striga asiatica HOM05D004872 ORTHO05D006050 9.3e-185 650.2 363 100.0
Migut.E01400 Erythranthe guttata HOM05D004872 ORTHO05D006050 3.2e-52 209.9 160 71.2
MSTRG.1742 Avicennia marina HOM05D004872 ORTHO05D006050 4.2e-52 209.5 163 71.8
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 1.1e-47 194.9 147 69.4
SalBow6G3136 Salvia bowleyana HOM05D004872 ORTHO05D006050 4.1e-47 193.0 157 67.5
DCAR_030961 Daucus carota HOM05D004872 ORTHO05D006050 6.5e-45 185.7 164 62.2
PGSC0003DMG400003977 Solanum tuberosum HOM05D004872 ORTHO05D006050 1.1e-44 184.9 146 67.1
Dinv22205 Davidia involucrata HOM05D004872 ORTHO05D006050 4.2e-44 183.0 161 62.1
CAN.G1549.27 Capsicum annuum HOM05D004872 ORTHO05D006050 9.4e-44 181.8 147 69.4
Peaxi162Scf00025g02826 Petunia axillaris HOM05D004872 ORTHO05D006050 3.6e-43 179.9 146 63.7
Nitab4.5_0002138g0010 Nicotiana tabacum HOM05D004872 ORTHO05D006050 4.7e-43 179.5 143 65.7
Thecc.09G254600 Theobroma cacao HOM05D004872 ORTHO05D006050 6.1e-43 179.1 144 63.2
Atru.chr4.2930 Acer truncatum HOM05D004872 ORTHO05D006050 1.0e-42 178.3 171 57.9
Cc11_g04500 Coffea canephora HOM05D004872 ORTHO05D006050 5.2e-42 176.0 145 64.8
Manes.09G068000 Manihot esculenta HOM05D004872 ORTHO05D006050 2.6e-41 173.7 155 61.3
GSVIVG01037356001 Vitis vinifera HOM05D004872 ORTHO05D006050 4.4e-41 172.9 169 58.6
Duzib150G1163 Durio zibethinus HOM05D004872 ORTHO05D006050 7.5e-41 172.2 144 62.5
CiPaw.14G110500 Carya illinoinensis HOM05D004872 ORTHO05D006050 1.7e-40 171.0 146 60.3
CSS0006428 Camellia sinensis var. sinensis HOM05D004872 ORTHO05D006050 4.8e-40 169.5 146 61.6
QL01p016491 Quercus lobata HOM05D004872 ORTHO05D006050 1.4e-39 167.9 162 57.4
QL01p024148 Quercus lobata HOM05D004872 ORTHO05D006050 1.4e-39 167.9 162 57.4
TPR.G29301 Trifolium pratense HOM05D004872 ORTHO05D006050 1.4e-39 167.9 171 57.3
Lsat_1_v5_gn_3_110040 Lactuca sativa HOM05D004872 ORTHO05D006050 3.1e-39 166.8 166 57.8
Cfa009914 Carpinus fangiana HOM05D004872 ORTHO05D006050 4.1e-39 166.4 158 58.2
RcHm_v2.0_Chr5g0046151 Rosa chinensis HOM05D004872 ORTHO05D006050 5.3e-39 166.0 161 55.9
Prupe.7G012800 Prunus persica HOM05D004872 ORTHO05D006050 7.0e-39 165.6 149 59.1
Solyc11g005570.2 Solanum lycopersicum HOM05D004872 ORTHO05D006050 1.2e-38 164.9 146 61.0
Sopen11g001540 Solanum pennellii HOM05D004872 ORTHO05D006050 1.2e-38 164.9 146 61.0
Cpa.g.sc34.184 Carica papaya HOM05D004872 ORTHO05D006050 1.6e-38 164.5 168 59.5
CiPaw.13G148000 Carya illinoinensis HOM05D004872 ORTHO05D006050 2.7e-38 163.7 160 56.9
Ciclev10006059m.g Citrus clementina HOM05D004872 ORTHO05D006050 3.5e-38 163.3 137 62.0
FAN25G2824 Fragaria x ananassa HOM05D004872 ORTHO05D006050 3.5e-38 163.3 146 58.9
FvH4_3g25170 Fragaria vesca HOM05D004872 ORTHO05D006050 4.5e-38 162.9 146 58.9
Psat2g130480 Pisum sativum HOM05D004872 ORTHO05D006050 7.7e-38 162.2 152 60.5
Rhsim07G0167900 Rhododendron simsii HOM05D004872 ORTHO05D006050 7.7e-38 162.2 170 55.3
Lsat_1_v5_gn_8_24740 Lactuca sativa HOM05D004872 ORTHO05D006050 1.3e-37 161.4 161 58.4
COL.COLO4_24934 Corchorus olitorius HOM05D004872 ORTHO05D006050 1.7e-37 161.0 139 62.6
HanXRQChr08g0217181 Helianthus annuus HOM05D004872 ORTHO05D006050 1.7e-37 161.0 175 52.6
Sc11g0003110 Simmondsia chinensis HOM05D004872 ORTHO05D006050 1.7e-37 161.0 164 56.7
THA.LOC104816943 Tarenaya hassleriana HOM05D004872 ORTHO05D006050 1.7e-37 161.0 133 61.7
Prupe.4G268800 Prunus persica HOM05D004872 ORTHO05D006050 2.9e-37 160.2 148 56.8
Glyma.08G136100 Glycine max HOM05D004872 ORTHO05D006050 5.0e-37 159.5 171 53.2
TPR.G26917 Trifolium pratense HOM05D004872 ORTHO05D006050 5.0e-37 159.5 171 55.0
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 6.5e-37 159.1 156 57.1
MD12G1010900 Malus domestica HOM05D004872 ORTHO05D006050 6.5e-37 159.1 149 57.0
TAR633G0253 Trochodendron aralioides HOM05D004872 ORTHO05D006050 6.5e-37 159.1 163 56.4
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 8.5e-37 158.7 112 69.6
Gohir.A09G108400 Gossypium hirsutum HOM05D004872 ORTHO05D006050 8.5e-37 158.7 144 57.6
Thhalv10019047m.g Eutrema salsugineum HOM05D004872 ORTHO05D006050 1.1e-36 158.3 156 57.1
Hma1.2p1_0299F.1_g117840 Hydrangea macrophylla HOM05D004872 ORTHO05D006050 1.9e-36 157.5 161 54.0
Sp4g26910 Schrenkiella parvula HOM05D004872 ORTHO05D006050 1.9e-36 157.5 133 61.7
ECA233G5422 Erigeron canadensis HOM05D004872 ORTHO05D006050 2.5e-36 157.1 140 61.4
Lj6g0009628 Lotus japonicus HOM05D004872 ORTHO05D006050 2.5e-36 157.1 160 56.2
Lj6g0013181 Lotus japonicus HOM05D004872 ORTHO05D006050 2.5e-36 157.1 160 56.2
Sabra13G0065000 Salix brachista HOM05D004872 ORTHO05D006050 2.5e-36 157.1 156 55.8
arahy.Tifrunner.gnm1.ann1.U00P2R Arachis hypogaea HOM05D004872 ORTHO05D006050 3.2e-36 156.8 168 53.6
CANSAT54G2026 Cannabis sativa HOM05D004872 ORTHO05D006050 3.2e-36 156.8 156 56.4
Medtr7g096840 Medicago truncatula HOM05D004872 ORTHO05D006050 3.2e-36 156.8 170 55.3
AUR62000220 Chenopodium quinoa HOM05D004872 ORTHO05D006050 4.2e-36 156.4 140 58.6
Glyma.01G027700 Glycine max HOM05D004872 ORTHO05D006050 4.2e-36 156.4 159 54.1
Aa31LG1G26360 Aethionema arabicum HOM05D004872 ORTHO05D006050 9.4e-36 155.2 162 54.3
Carub.0004s2739 Capsella rubella HOM05D004872 ORTHO05D006050 9.4e-36 155.2 159 54.1
MELO3C014544.2 Cucumis melo HOM05D004872 ORTHO05D006050 9.4e-36 155.2 178 52.2
Oeu040527.1 Olea europaea HOM05D004872 ORTHO05D006050 9.4e-36 155.2 124 71.0
arahy.Tifrunner.gnm1.ann1.EX2XSN Arachis hypogaea HOM05D004872 ORTHO05D006050 1.6e-35 154.5 168 52.4
Nn2g15815 Nelumbo nucifera HOM05D004872 ORTHO05D006050 1.6e-35 154.5 171 53.2
BolC4t22211H Brassica oleracea HOM05D004872 ORTHO05D006050 2.1e-35 154.1 146 58.2
Eucgr.J02277 Eucalyptus grandis HOM05D004872 ORTHO05D006050 2.1e-35 154.1 155 56.1
HanXRQChr10g0315331 Helianthus annuus HOM05D004872 ORTHO05D006050 2.7e-35 153.7 160 54.4
Oeu026038.1 Olea europaea HOM05D004872 ORTHO05D006050 2.7e-35 153.7 123 71.5
Gohir.D09G105300 Gossypium hirsutum HOM05D004872 ORTHO05D006050 3.6e-35 153.3 144 56.2
BraA05t19473Z Brassica rapa HOM05D004872 ORTHO05D006050 6.1e-35 152.5 129 62.8
TWI31G0308 Tripterygium wilfordii HOM05D004872 ORTHO05D006050 8.0e-35 152.1 167 52.7
BcaB02g08868 Brassica carinata HOM05D004872 ORTHO05D006050 1.0e-34 151.8 147 59.2
CsaV3_6G038800 Cucumis sativus L. HOM05D004872 ORTHO05D006050 1.4e-34 151.4 163 54.0
Potri.013G075500 Populus trichocarpa HOM05D004872 ORTHO05D006050 1.4e-34 151.4 147 57.1
BcaC02g12267 Brassica carinata HOM05D004872 ORTHO05D006050 1.8e-34 151.0 129 62.8
C04p05820 Brassica napus HOM05D004872 ORTHO05D006050 1.8e-34 151.0 129 62.8
ClCG02G022680 Citrullus lanatus HOM05D004872 ORTHO05D006050 1.8e-34 151.0 172 51.2
A05p04990 Brassica napus HOM05D004872 ORTHO05D006050 2.3e-34 150.6 152 57.9
Ah.04g159640 Amaranthus hybridus HOM05D004872 ORTHO05D006050 3.0e-34 150.2 167 53.9
Nitab4.5_0001582g0110 Nicotiana tabacum HOM05D004872 ORTHO05D006050 3.0e-34 150.2 146 58.2
CARHR140030 Cardamine hirsuta HOM05D004872 ORTHO05D006050 4.0e-34 149.8 132 59.1
VMungo0251G0214 Vigna mungo HOM05D004872 ORTHO05D006050 4.0e-34 149.8 173 50.9
BolC4t23202H Brassica oleracea HOM05D004872 ORTHO05D006050 6.8e-34 149.1 141 58.2
Phvul.002G255800 Phaseolus vulgaris HOM05D004872 ORTHO05D006050 8.8e-34 148.7 171 48.5
Gorai.006G122300 Gossypium raimondii HOM05D004872 ORTHO05D006050 1.2e-33 148.3 145 55.9
AUR62006565 Chenopodium quinoa HOM05D004872 ORTHO05D006050 1.5e-33 147.9 143 55.9
Nn8g39701 Nelumbo nucifera HOM05D004872 ORTHO05D006050 1.5e-33 147.9 162 55.6
FAN11G3172 Fragaria x ananassa HOM05D004872 ORTHO05D006050 2.6e-33 147.1 128 60.2
BraA05t20203Z Brassica rapa HOM05D004872 ORTHO05D006050 4.4e-33 146.4 145 56.6
AL4G43900 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 5.7e-33 146.0 158 53.8
A05p12650 Brassica napus HOM05D004872 ORTHO05D006050 5.7e-33 146.0 146 55.5
Lalb_Chr04g0249071 Lupinus albus HOM05D004872 ORTHO05D006050 7.5e-33 145.6 160 54.4
EL10Ac4g10086 Beta vulgaris HOM05D004872 ORTHO05D006050 9.8e-33 145.2 146 54.1
Aqoxy2G00467 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 1.3e-32 144.8 170 51.8
arahy.Tifrunner.gnm1.ann1.K1U5S9 Arachis hypogaea HOM05D004872 ORTHO05D006050 3.7e-32 143.3 186 48.4
BcaB02g10512 Brassica carinata HOM05D004872 ORTHO05D006050 4.8e-32 142.9 157 51.6
Manes.08G069866 Manihot esculenta HOM05D004872 ORTHO05D006050 6.3e-32 142.5 153 54.2
Sed0007255 Sechium edule HOM05D004872 ORTHO05D006050 8.3e-32 142.1 146 56.8
AT2G44820 Arabidopsis thaliana HOM05D004872 ORTHO05D006050 1.8e-31 141.0 174 49.4
Aqoxy1G01418 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 3.1e-31 140.2 145 55.9
Aqoxy7G03169 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 4.1e-31 139.8 170 50.0
Hund07423 Selenicereus undatus HOM05D004872 ORTHO05D006050 4.1e-31 139.8 128 56.2
MBI17_g09534_MAGBIO Magnolia biondii HOM05D004872 ORTHO05D006050 5.4e-31 139.4 145 53.1
arahy.Tifrunner.gnm1.ann1.R4J47E Arachis hypogaea HOM05D004872 ORTHO05D006050 9.1e-31 138.7 190 46.8
Sp2g10980 Schrenkiella parvula HOM05D004872 ORTHO05D006050 9.1e-31 138.7 146 54.8
Aqoxy72s001 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 2.0e-30 137.5 145 55.2
ECA236G0590 Erigeron canadensis HOM05D004872 ORTHO05D006050 5.0e-29 132.9 117 65.0
CDE05G2894 Ceratophyllum demersum HOM05D004872 ORTHO05D006050 8.6e-29 132.1 142 52.8
Aa31LG9G10050 Aethionema arabicum HOM05D004872 ORTHO05D006050 1.9e-28 131.0 156 51.3
PSO017G2452 Papaver somniferum HOM05D004872 ORTHO05D006050 2.5e-28 130.6 138 52.2
PSO017G5814 Papaver somniferum HOM05D004872 ORTHO05D006050 2.5e-28 130.6 138 52.2
PSO529G0002 Papaver somniferum HOM05D004872 ORTHO05D006050 2.5e-28 130.6 138 52.2
PSO591G0356 Papaver somniferum HOM05D004872 ORTHO05D006050 2.5e-28 130.6 138 52.2
PSO705G0001 Papaver somniferum HOM05D004872 ORTHO05D006050 2.5e-28 130.6 138 52.2
PSO541G2017 Papaver somniferum HOM05D004872 ORTHO05D006050 3.3e-28 130.2 139 51.8
Os01g0224500 Oryza sativa ssp. japonica HOM05D004872 ORTHO05D006050 4.2e-28 129.8 163 48.5
PSO591G0248 Papaver somniferum HOM05D004872 ORTHO05D006050 4.2e-28 129.8 138 52.2
Zm00001eb192850 Zea mays HOM05D004872 ORTHO05D006050 8.9e-26 122.1 155 45.2
vmacro05825 Vaccinium macrocarpon HOM05D004872 ORTHO05D006050 1.7e-24 117.9 162 46.9
HPP92_015870 Vanilla planifolia HOM05D004872 ORTHO05D006050 1.1e-23 115.2 147 48.3
BcaC02g11364 Brassica carinata HOM05D004872 ORTHO05D006050 1.4e-23 114.8 156 48.1
AL7G43510 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 7.0e-23 112.5 150 46.0
CiPaw.13G148200 Carya illinoinensis HOM05D004872 ORTHO05D006050 2.3e-21 107.5 132 50.0
Sc11g0003120 Simmondsia chinensis HOM05D004872 ORTHO05D006050 1.1e-20 105.1 104 58.7
Zm00001eb281550 Zea mays HOM05D004872 ORTHO05D006050 6.1e-19 99.4 123 46.3
ATR0665G028 Amborella trichopoda HOM05D004872 ORTHO05D006050 2.3e-18 97.4 112 43.8
arahy.Tifrunner.gnm1.ann1.X2Q8UN Arachis hypogaea HOM05D004872 ORTHO05D006050 3.4e-17 93.6 149 44.3
PGR102G1802 Punica granatum HOM05D004872 ORTHO05D006050 1.2e-14 85.1 162 34.0
Mapoly0036s0026 Marchantia polymorpha HOM05D004872 ORTHO05D006050 4.6e-14 83.2 150 35.3
AagrBONN_evm.TU.Sc2ySwM_362.236 Anthoceros agrestis HOM05D004872 ORTHO05D006050 7.8e-14 82.4 159 35.8
TPR.G14060 Trifolium pratense HOM05D004872 ORTHO05D006050 2.3e-13 80.9 120 49.2
Zm00001eb416880 Zea mays HOM05D004872 ORTHO05D006050 1.9e-12 77.8 106 42.5
Aqoxy7G03168 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 2.5e-12 77.4 111 43.2
Atru.chr1.3406 Acer truncatum HOM05D004872 ORTHO05D006050 9.5e-12 75.5 75 57.3
Pp3c23_7100 Physcomitrium patens HOM05D004872 ORTHO05D006050 1.6e-11 74.7 149 33.6
SEGI_13451 Sequoiadendron giganteum HOM05D004872 ORTHO05D006050 6.2e-11 72.8 183 31.1
HanXRQChr17g0569331 Helianthus annuus HOM05D004872 ORTHO05D006050 1.5e-09 68.2 82 42.7
C04p16540 Brassica napus HOM05D004872 ORTHO05D006050 2.6e-09 67.4 181 33.7
Ca_21429_v3 Cicer arietinum L. HOM05D004872 ORTHO05D006050 3.4e-09 67.0 75 50.7
SGA_v2.0_scaffold71G23872 Striga asiatica HOM05D007057 ORTHO05D008878 3.2e-07 60.5 57 68.4
AL225U10020 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 7.0e-07 59.3 81 46.9
Zm00001eb223020 Zea mays HOM05D004872 ORTHO05D006050 1.6e-06 58.2 72 43.1
Zm00001eb276900 Zea mays HOM05D004872 ORTHO05D006050 1.6e-06 58.2 72 43.1
Duzib170G0487 Durio zibethinus HOM05D004872 ORTHO05D006050 3.5e-06 57.0 42 52.4


User provided reference genes

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