Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1443G53951 Striga asiatica HOM05D005866 ORTHO05D007078 3.2e-50 201.4 102 100.0
Glyma.07G145800 Glycine max HOM05D005866 ORTHO05D007078 2.5e-18 95.5 103 51.5
AUR62042946 Chenopodium quinoa HOM05D005866 ORTHO05D007078 4.3e-18 94.7 105 54.3
Aqoxy1G00701 Aquilegia oxysepala HOM05D005866 ORTHO05D007078 9.5e-18 93.6 106 54.7
Glyma.18G197300 Glycine max HOM05D005866 ORTHO05D007078 1.2e-17 93.2 103 49.5
Potri.006G096700 Populus trichocarpa HOM05D005866 ORTHO05D007078 1.2e-17 93.2 113 54.9
AUR62025814 Chenopodium quinoa HOM05D005866 ORTHO05D007078 2.1e-17 92.4 105 53.3
Lj1g0011685 Lotus japonicus HOM05D005866 ORTHO05D007078 2.8e-17 92.0 103 50.5
Hund02698 Selenicereus undatus HOM05D005866 ORTHO05D007078 6.1e-17 90.9 103 51.5
VMungo1383G0141 Vigna mungo HOM05D005866 ORTHO05D007078 8.0e-17 90.5 102 48.0
FAN14G3518 Fragaria x ananassa HOM05D005866 ORTHO05D007078 1.0e-16 90.1 104 51.9
Gohir.D01G215200 Gossypium hirsutum HOM05D005866 ORTHO05D007078 1.4e-16 89.7 105 51.4
Psat7g247600 Pisum sativum HOM05D005866 ORTHO05D007078 3.0e-16 88.6 77 54.5
ECA247G0127 Erigeron canadensis HOM05D005866 ORTHO05D007078 5.2e-16 87.8 52 82.7
ECA247G1841 Erigeron canadensis HOM05D005866 ORTHO05D007078 5.2e-16 87.8 52 82.7
TPR.G1580 Trifolium pratense HOM05D005866 ORTHO05D007078 5.2e-16 87.8 104 50.0
Medtr7g067000 Medicago truncatula HOM05D005866 ORTHO05D007078 1.2e-15 86.7 104 49.0
ATR0618G115 Amborella trichopoda HOM05D005866 ORTHO05D007078 1.5e-15 86.3 94 50.0
arahy.Tifrunner.gnm1.ann1.LP8IIZ Arachis hypogaea HOM05D005866 ORTHO05D007078 2.0e-15 85.9 108 48.1
arahy.Tifrunner.gnm1.ann1.Q1H550 Arachis hypogaea HOM05D005866 ORTHO05D007078 2.0e-15 85.9 103 47.6
arahy.Tifrunner.gnm1.ann1.QNAF0W Arachis hypogaea HOM05D005866 ORTHO05D007078 2.0e-15 85.9 108 48.1
HanXRQChr10g0287001 Helianthus annuus HOM05D005866 ORTHO05D007078 2.0e-15 85.9 59 69.5
MD04G1147400 Malus domestica HOM05D005866 ORTHO05D007078 2.0e-15 85.9 104 52.9
Psat3g131120 Pisum sativum HOM05D005866 ORTHO05D007078 3.4e-15 85.1 102 47.1
Lj2C80T14 Lonicera japonica HOM05D005866 ORTHO05D007078 9.8e-15 83.6 103 47.6
Lj3g0009346 Lotus japonicus HOM05D005866 ORTHO05D007078 9.8e-15 83.6 105 48.6
arahy.Tifrunner.gnm1.ann1.6JA19R Arachis hypogaea HOM05D005866 ORTHO05D007078 2.9e-14 82.0 103 45.6
Aa31LG3G1580 Aethionema arabicum HOM05D005866 ORTHO05D007078 4.9e-14 81.3 55 70.9
Ca_07614_v3 Cicer arietinum L. HOM05D005866 ORTHO05D007078 8.3e-14 80.5 70 57.1
FvH4_6g11980 Fragaria vesca HOM05D005866 ORTHO05D007078 8.3e-14 80.5 97 50.5
BcaC09g48006 Brassica carinata HOM05D005866 ORTHO05D007078 1.1e-13 80.1 61 63.9
FAN14G3397 Fragaria x ananassa HOM05D000012 ORTHO05D000567 1.1e-13 80.1 97 50.5
Phvul.008G107300 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 1.4e-13 79.7 90 47.8
BraA01t04319Z Brassica rapa HOM05D005866 ORTHO05D007078 2.4e-13 79.0 74 55.4
FAN02G1355 Fragaria x ananassa HOM05D005866 ORTHO05D007078 2.4e-13 79.0 97 50.5
Lalb_Chr07g0193301 Lupinus albus HOM05D005866 ORTHO05D007078 2.4e-13 79.0 71 57.7
FAN09G2814 Fragaria x ananassa HOM05D000012 ORTHO05D007078 3.2e-13 78.6 97 49.5
arahy.Tifrunner.gnm1.ann1.F83RTD Arachis hypogaea HOM05D005866 ORTHO05D007078 9.2e-13 77.0 106 45.3
arahy.Tifrunner.gnm1.ann1.T33YJ3 Arachis hypogaea HOM05D005866 ORTHO05D007078 9.2e-13 77.0 106 45.3
MSTRG.5595 Avicennia marina HOM05D005866 ORTHO05D007078 1.6e-12 76.3 85 52.9
Thecc.05G021700 Theobroma cacao HOM05D005866 ORTHO05D007078 1.3e-11 73.2 87 47.1
vmacro08602 Vaccinium macrocarpon HOM05D005866 ORTHO05D007078 2.3e-11 72.4 83 53.0
Eucgr.B02792 Eucalyptus grandis HOM05D005866 ORTHO05D007078 3.9e-11 71.6 93 47.3
Migut.J00221 Erythranthe guttata HOM05D005866 ORTHO05D007078 5.0e-11 71.2 87 50.6
TAR623G0986 Trochodendron aralioides HOM05D005866 ORTHO05D007078 5.0e-11 71.2 89 48.3
CiPaw.09G206400 Carya illinoinensis HOM05D005866 ORTHO05D007078 6.6e-11 70.9 59 64.4
Os01g0853000 Oryza sativa ssp. japonica HOM05D005866 ORTHO05D007078 6.6e-11 70.9 95 40.0
Lalb_Chr03g0043011 Lupinus albus HOM05D005866 ORTHO05D007078 1.9e-10 69.3 85 49.4
THA.LOC104816219 Tarenaya hassleriana HOM05D005866 ORTHO05D007078 2.5e-10 68.9 85 48.2
Duzib128G1899 Durio zibethinus HOM05D005866 ORTHO05D007078 3.3e-10 68.6 87 51.7
Haze_20956 Corylus avellana HOM05D005866 ORTHO05D007078 4.3e-10 68.2 83 50.6
unitig_578.g15896 Utricularia gibba HOM05D005866 ORTHO05D007078 4.3e-10 68.2 85 48.2
Zm00001eb367320 Zea mays HOM05D005866 ORTHO05D007078 4.3e-10 68.2 101 38.6
GSVIVG01034004001 Vitis vinifera HOM05D000012 ORTHO05D000567 5.6e-10 67.8 84 51.2
Sopen10g034540 Solanum pennellii HOM05D005866 ORTHO05D007078 1.2e-09 66.6 82 48.8
PGSC0003DMG400011090 Solanum tuberosum HOM05D005866 ORTHO05D007078 1.2e-09 66.6 82 48.8
Solyc10g085080.3 Solanum lycopersicum HOM05D005866 ORTHO05D007078 1.6e-09 66.2 82 48.8
CSS0007949 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 2.1e-09 65.9 87 49.4
CSS0025068 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 2.1e-09 65.9 87 49.4
Cc06_g01630 Coffea canephora HOM05D005866 ORTHO05D007078 2.8e-09 65.5 83 53.0
Medtr4g015010 Medicago truncatula HOM05D005866 ORTHO05D007078 2.8e-09 65.5 92 42.4
FAN05G0379 Fragaria x ananassa HOM05D000012 ORTHO05D000567 3.6e-09 65.1 87 47.1
Glyma.03G077300 Glycine max HOM05D005866 ORTHO05D007078 6.2e-09 64.3 86 46.5
Prupe.6G271100 Prunus persica HOM05D000012 ORTHO05D000567 6.2e-09 64.3 86 44.2
PSO384G0902 Papaver somniferum HOM05D005866 ORTHO05D007078 8.0e-09 63.9 73 47.9
PGR031G2542 Punica granatum HOM05D005866 ORTHO05D007078 1.1e-08 63.5 88 47.7
Ciclev10012537m.g Citrus clementina HOM05D005866 ORTHO05D007078 1.4e-08 63.2 82 46.3
Manes.09G102400 Manihot esculenta HOM05D005866 ORTHO05D007078 1.4e-08 63.2 50 62.0
COL.COLO4_14593 Corchorus olitorius HOM05D005866 ORTHO05D007078 1.8e-08 62.8 86 46.5
CsaV3_4G026010 Cucumis sativus L. HOM05D005866 ORTHO05D007078 1.8e-08 62.8 69 47.8
Nn2g11373 Nelumbo nucifera HOM05D005866 ORTHO05D007078 1.8e-08 62.8 62 53.2
Nitab4.5_0000652g0170 Nicotiana tabacum HOM05D005866 ORTHO05D007078 1.8e-08 62.8 58 55.2
PGSC0003DMG400020319 Solanum tuberosum HOM05D005866 ORTHO05D007078 1.8e-08 62.8 89 44.9
TWI74G1551 Tripterygium wilfordii HOM05D005866 ORTHO05D007078 1.8e-08 62.8 56 58.9
Gohir.A01G225500 Gossypium hirsutum HOM05D005866 ORTHO05D007078 2.3e-08 62.4 84 47.6
Sabra06G0074300 Salix brachista HOM05D005866 ORTHO05D007078 3.1e-08 62.0 62 53.2
CANSAT35G0638 Cannabis sativa HOM05D005866 ORTHO05D007078 4.0e-08 61.6 84 42.9
Nitab4.5_0000008g0810 Nicotiana tabacum HOM05D005866 ORTHO05D007078 4.0e-08 61.6 58 53.4
Dinv14530 Davidia involucrata HOM05D005866 ORTHO05D007078 5.2e-08 61.2 59 55.9
Dinv35509 Davidia involucrata HOM05D005866 ORTHO05D007078 5.2e-08 61.2 59 55.9
Gorai.002G261300 Gossypium raimondii HOM05D005866 ORTHO05D007078 5.2e-08 61.2 85 47.1
Nitab4.5_0001837g0050 Nicotiana tabacum HOM05D005866 ORTHO05D007078 6.8e-08 60.8 86 46.5
TPR.G5230 Trifolium pratense HOM05D005866 ORTHO05D007078 6.8e-08 60.8 86 44.2
Actinidia01119 Actinidia chinensis HOM05D005866 ORTHO05D007078 8.9e-08 60.5 87 46.0
Cpa.g.sc56.117 Carica papaya HOM05D005866 ORTHO05D007078 8.9e-08 60.5 86 45.3
Sc01g0006840 Simmondsia chinensis HOM05D005866 ORTHO05D007078 8.9e-08 60.5 86 47.7
Ah.12g060060 Amaranthus hybridus HOM05D005866 ORTHO05D007078 1.5e-07 59.7 49 57.1
Peaxi162Scf00009g01923 Petunia axillaris HOM05D005866 ORTHO05D007078 2.6e-07 58.9 58 55.2
DCAR_015452 Daucus carota HOM05D005866 ORTHO05D007078 3.4e-07 58.5 86 46.5
Peaxi162Scf00141g00718 Petunia axillaris HOM05D005866 ORTHO05D007078 7.5e-07 57.4 59 52.5
Phvul.010G008600 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 7.5e-07 57.4 51 54.9
CAN.G1297.4 Capsicum annuum HOM05D005866 ORTHO05D007078 9.8e-07 57.0 82 42.7
Lsat_1_v5_gn_9_36061 Lactuca sativa HOM05D005866 ORTHO05D007078 2.2e-06 55.8 90 42.2
BcaC09g48050 Brassica carinata HOM05D005866 ORTHO05D007078 2.9e-06 55.5 55 52.7
BolC1t05477H Brassica oleracea HOM05D005866 ORTHO05D007078 2.9e-06 55.5 55 52.7
CDE03G0505 Ceratophyllum demersum HOM05D005866 ORTHO05D007078 2.9e-06 55.5 57 49.1
AL3G20110 Arabidopsis lyrata HOM05D005866 ORTHO05D007078 3.7e-06 55.1 35 71.4
Solyc09g014215.2 Solanum lycopersicum HOM05D005866 ORTHO05D007078 6.4e-06 54.3 91 41.8
Carub.0003s0821 Capsella rubella HOM05D005866 ORTHO05D007078 8.3e-06 53.9 47 57.4


User provided reference genes

Program Settings