Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold143G35762 Striga asiatica HOM05D000476 ORTHO05D029332 7.0e-82 307.4 171 100.0
SGA_v2.0_scaffold58G20351 Striga asiatica HOM05D000476 ORTHO05D005719 8.1e-54 214.2 160 81.2
SGA_v2.0_scaffold55G19716 Striga asiatica HOM05D000476 ORTHO05D029332 5.4e-50 201.4 134 79.1
Oeu029648.1 Olea europaea HOM05D000476 ORTHO05D005719 1.9e-34 149.8 167 52.1
MSTRG.16926 Avicennia marina HOM05D000476 ORTHO05D005719 9.3e-34 147.5 166 52.4
SalBow1G8296 Salvia bowleyana HOM05D000476 ORTHO05D005719 2.1e-33 146.4 152 52.0
Migut.B00063 Erythranthe guttata HOM05D000476 ORTHO05D005719 4.6e-33 145.2 164 52.4
unitig_0.g814 Utricularia gibba HOM05D000476 ORTHO05D005719 8.7e-32 141.0 166 51.8
Haze_02112 Corylus avellana HOM05D000476 ORTHO05D005719 1.6e-30 136.7 165 49.7
Actinidia18045 Actinidia chinensis HOM05D000476 ORTHO05D005719 2.1e-30 136.3 161 50.3
SGA_v2.0_scaffold241G44210 Striga asiatica HOM05D000476 ORTHO05D028872 6.2e-30 134.8 75 89.3
Actinidia20522 Actinidia chinensis HOM05D000476 ORTHO05D005719 1.4e-29 133.7 161 49.7
Cc09_g10250 Coffea canephora HOM05D000476 ORTHO05D005719 1.4e-29 133.7 167 55.7
Rhsim11G0193200 Rhododendron simsii HOM05D000476 ORTHO05D005719 1.8e-29 133.3 165 48.5
Cfa005281 Carpinus fangiana HOM05D000476 ORTHO05D005719 5.3e-29 131.7 160 48.8
CiPaw.05G084600 Carya illinoinensis HOM05D000476 ORTHO05D005719 5.3e-29 131.7 164 48.2
vmacro02286 Vaccinium macrocarpon HOM05D000476 ORTHO05D005719 9.0e-29 131.0 167 48.5
Hma1.2p1_0163F.1_g072630 Hydrangea macrophylla HOM05D000476 ORTHO05D005719 2.0e-28 129.8 170 45.3
PSO170G5898 Papaver somniferum HOM05D000476 ORTHO05D005719 2.0e-28 129.8 157 49.7
QL11p051500 Quercus lobata HOM05D000476 ORTHO05D005719 2.6e-28 129.4 163 49.1
Ciclev10030360m.g Citrus clementina HOM05D000476 ORTHO05D005719 7.6e-28 127.9 157 47.8
Duzib248G0030 Durio zibethinus HOM05D000476 ORTHO05D005719 7.6e-28 127.9 163 45.4
PSO210G5945 Papaver somniferum HOM05D000476 ORTHO05D005719 7.6e-28 127.9 160 50.6
Thecc.02G056200 Theobroma cacao HOM05D000476 ORTHO05D005719 7.6e-28 127.9 164 46.3
Dinv41922 Davidia involucrata HOM05D000476 ORTHO05D005719 1.9e-26 123.2 160 47.5
Nn5g30832 Nelumbo nucifera HOM05D000476 ORTHO05D005719 2.4e-26 122.9 153 47.7
Aqoxy5G01114 Aquilegia oxysepala HOM05D000476 ORTHO05D005719 3.2e-26 122.5 158 50.6
TAR381G1494 Trochodendron aralioides HOM05D000476 ORTHO05D005719 4.2e-26 122.1 154 53.9
CSS0012841 Camellia sinensis var. sinensis HOM05D000476 ORTHO05D005719 5.4e-26 121.7 159 49.1
Thecc.02G056700 Theobroma cacao HOM05D000476 ORTHO05D029332 5.4e-26 121.7 167 44.3
Potri.009G137500 Populus trichocarpa HOM05D000476 ORTHO05D005719 1.2e-25 120.6 156 48.1
Sopen01g053780 Solanum pennellii HOM05D000476 ORTHO05D005719 1.2e-25 120.6 170 45.9
Solyc01g111740.3 Solanum lycopersicum HOM05D000476 ORTHO05D005719 2.1e-25 119.8 170 45.3
PGSC0003DMG400018042 Solanum tuberosum HOM05D000476 ORTHO05D005719 2.7e-25 119.4 173 45.1
Medtr1g112850 Medicago truncatula HOM05D000476 ORTHO05D005719 3.5e-25 119.0 168 45.2
Potri.005G108400 Populus trichocarpa HOM05D000476 ORTHO05D005719 3.5e-25 119.0 156 44.9
Ah.01g008190 Amaranthus hybridus HOM05D000476 ORTHO05D005719 4.6e-25 118.6 171 44.4
Lsat_1_v5_gn_4_71841 Lactuca sativa HOM05D000476 ORTHO05D005719 6.0e-25 118.2 162 48.1
Peaxi162Scf00362g00535 Petunia axillaris HOM05D000476 ORTHO05D005719 7.9e-25 117.9 171 46.2
Lj9A397G33 Lonicera japonica HOM05D000476 ORTHO05D005719 1.8e-24 116.7 161 55.3
Lj9C400T3 Lonicera japonica HOM05D000476 ORTHO05D005719 1.8e-24 116.7 161 55.3
Prupe.7G174500 Prunus persica HOM05D000476 ORTHO05D005719 1.8e-24 116.7 155 45.2
Ca_03300_v3 Cicer arietinum L. HOM05D000476 ORTHO05D005719 3.0e-24 115.9 159 45.9
CANSAT25G2378 Cannabis sativa HOM05D000476 ORTHO05D005719 3.9e-24 115.5 160 45.6
Potri.004G177200 Populus trichocarpa HOM05D000476 ORTHO05D005719 3.9e-24 115.5 155 44.5
Sabra09G0106700 Salix brachista HOM05D000476 ORTHO05D005719 3.9e-24 115.5 154 44.2
RcHm_v2.0_Chr6g0278761 Rosa chinensis HOM05D000476 ORTHO05D005719 5.1e-24 115.2 169 47.9
Sabra04G0119100 Salix brachista HOM05D000476 ORTHO05D005719 6.7e-24 114.8 156 45.5
FvH4_1g11140 Fragaria vesca HOM05D000476 ORTHO05D005719 8.7e-24 114.4 159 44.7
FAN19G2503 Fragaria x ananassa HOM05D000476 ORTHO05D005719 8.7e-24 114.4 159 44.7
Glyma.10G283000 Glycine max HOM05D000476 ORTHO05D005719 8.7e-24 114.4 167 49.1
Gohir.A01G170100 Gossypium hirsutum HOM05D000476 ORTHO05D005719 8.7e-24 114.4 151 51.7
Gohir.D01G161200 Gossypium hirsutum HOM05D000476 ORTHO05D005719 8.7e-24 114.4 151 51.7
Gorai.002G199800 Gossypium raimondii HOM05D000476 ORTHO05D005719 8.7e-24 114.4 151 51.7
Nitab4.5_0004864g0010 Nicotiana tabacum HOM05D000476 ORTHO05D005719 1.1e-23 114.0 167 43.7
TWI31G0618 Tripterygium wilfordii HOM05D000476 ORTHO05D005719 1.1e-23 114.0 166 43.4
CAN.G588.95 Capsicum annuum HOM05D000476 ORTHO05D005719 1.5e-23 113.6 167 43.7
Nn6g31926 Nelumbo nucifera HOM05D000476 ORTHO05D005719 1.5e-23 113.6 156 44.2
TPR.G2472 Trifolium pratense HOM05D000476 ORTHO05D005719 1.5e-23 113.6 160 45.0
Glyma.20G106700 Glycine max HOM05D000476 ORTHO05D005719 1.9e-23 113.2 163 47.2
Psat6g232560 Pisum sativum HOM05D000476 ORTHO05D005719 1.9e-23 113.2 161 44.1
FAN26G0730 Fragaria x ananassa HOM05D000476 ORTHO05D005719 3.3e-23 112.5 151 44.4
ClCG02G012060 Citrullus lanatus HOM05D000476 ORTHO05D005719 4.3e-23 112.1 166 42.2
AUR62013007 Chenopodium quinoa HOM05D000476 ORTHO05D005719 5.6e-23 111.7 183 41.5
FvH4_2g15580 Fragaria vesca HOM05D000476 ORTHO05D005719 5.6e-23 111.7 165 46.7
FAN28G1417 Fragaria x ananassa HOM05D000476 ORTHO05D005719 5.6e-23 111.7 155 43.2
Manes.01G150500 Manihot esculenta HOM05D000476 ORTHO05D005719 5.6e-23 111.7 152 42.8
Nitab4.5_0003698g0070 Nicotiana tabacum HOM05D000476 ORTHO05D005719 5.6e-23 111.7 175 41.7
DCAR_022959 Daucus carota HOM05D000476 ORTHO05D005719 7.4e-23 111.3 171 44.4
FAN24G1070 Fragaria x ananassa HOM05D000476 ORTHO05D005719 9.6e-23 110.9 162 46.3
HanXRQChr10g0300811 Helianthus annuus HOM05D000476 ORTHO05D005719 9.6e-23 110.9 161 50.3
Sabra05G0088800 Salix brachista HOM05D000476 ORTHO05D005719 9.6e-23 110.9 156 43.6
Sed0002256 Sechium edule HOM05D000476 ORTHO05D005719 9.6e-23 110.9 166 42.2
Manes.02G109900 Manihot esculenta HOM05D000476 ORTHO05D005719 1.3e-22 110.5 155 43.9
Cpa.g.sc20.106 Carica papaya HOM05D000476 ORTHO05D005719 1.6e-22 110.2 181 47.5
MELO3C020830.2 Cucumis melo HOM05D000476 ORTHO05D005719 1.6e-22 110.2 166 41.0
FAN23G2355 Fragaria x ananassa HOM05D000476 ORTHO05D005719 1.6e-22 110.2 155 42.6
Manes.04G071400 Manihot esculenta HOM05D000476 ORTHO05D005719 1.6e-22 110.2 169 52.1
CsaV3_2G016220 Cucumis sativus L. HOM05D000476 ORTHO05D005719 2.8e-22 109.4 166 39.8
FAN27G1175 Fragaria x ananassa HOM05D000476 ORTHO05D005719 2.8e-22 109.4 162 49.4
Lalb_Chr21g0307031 Lupinus albus HOM05D000476 ORTHO05D005719 2.8e-22 109.4 164 45.1
MD10G1127200 Malus domestica HOM05D000476 ORTHO05D005719 2.8e-22 109.4 168 44.0
arahy.Tifrunner.gnm1.ann1.FXE6P8 Arachis hypogaea HOM05D000476 ORTHO05D005719 4.8e-22 108.6 165 47.3
Phvul.007G018200 Phaseolus vulgaris HOM05D000476 ORTHO05D005719 4.8e-22 108.6 159 45.9
TWI75G0421 Tripterygium wilfordii HOM05D000476 ORTHO05D005719 4.8e-22 108.6 156 44.2
FAN20G0044 Fragaria x ananassa HOM05D000476 ORTHO05D005719 8.1e-22 107.8 162 50.0
Sc18g0006370 Simmondsia chinensis HOM05D000476 ORTHO05D005719 8.1e-22 107.8 159 49.7
Atru.chr5.3386 Acer truncatum HOM05D000476 ORTHO05D005719 1.4e-21 107.1 172 49.4
VMungo0720G1528 Vigna mungo HOM05D000476 ORTHO05D005719 1.4e-21 107.1 166 42.8
PGR142G3087 Punica granatum HOM05D000476 ORTHO05D005719 2.4e-21 106.3 163 41.1
FAN15G2981 Fragaria x ananassa HOM05D000476 ORTHO05D005719 3.1e-21 105.9 162 49.4
RcHm_v2.0_Chr2g0098421 Rosa chinensis HOM05D000476 ORTHO05D005719 4.0e-21 105.5 152 43.4
MD05G1124400 Malus domestica HOM05D000476 ORTHO05D005719 6.9e-21 104.8 173 42.2
Lj5g0010360 Lotus japonicus HOM05D000476 ORTHO05D005719 1.2e-20 104.0 165 43.0
arahy.Tifrunner.gnm1.ann1.5E9YX9 Arachis hypogaea HOM05D000476 ORTHO05D005719 1.5e-20 103.6 170 45.3
Prupe.8G168100 Prunus persica HOM05D000476 ORTHO05D005719 1.5e-20 103.6 170 41.2
QL06p051967 Quercus lobata HOM05D000476 ORTHO05D005719 1.5e-20 103.6 146 43.2
Ah.01g023180 Amaranthus hybridus HOM05D000476 ORTHO05D005719 2.0e-20 103.2 156 44.9
AUR62010017 Chenopodium quinoa HOM05D000476 ORTHO05D005719 2.0e-20 103.2 161 43.5
Hma1.2p1_0561F.1_g178970 Hydrangea macrophylla HOM05D000476 ORTHO05D005719 3.4e-20 102.4 154 41.6
Dinv40142 Davidia involucrata HOM05D000476 ORTHO05D005719 4.5e-20 102.1 159 40.9
Thecc.01G012000 Theobroma cacao HOM05D000476 ORTHO05D005719 4.5e-20 102.1 155 40.0
CANSAT01G2246 Cannabis sativa HOM05D000476 ORTHO05D005719 2.2e-19 99.8 158 39.9
Haze_03708 Corylus avellana HOM05D000476 ORTHO05D005719 2.2e-19 99.8 152 39.5
Duzib147G1555 Durio zibethinus HOM05D000476 ORTHO05D005719 2.9e-19 99.4 156 37.2
Eucgr.J00964 Eucalyptus grandis HOM05D000476 ORTHO05D029332 2.9e-19 99.4 150 43.3
Cfa007026 Carpinus fangiana HOM05D000476 ORTHO05D005719 4.9e-19 98.6 152 38.8
ECA234G3651 Erigeron canadensis HOM05D000476 ORTHO05D005719 1.9e-18 96.7 174 50.0
Duzib132G1235 Durio zibethinus HOM05D000476 ORTHO05D005719 3.2e-18 95.9 131 42.7
Sed0017619 Sechium edule HOM05D000476 ORTHO05D005719 3.2e-18 95.9 160 41.2
EL10Ac9g21346 Beta vulgaris HOM05D000476 ORTHO05D005719 4.2e-18 95.5 163 39.9
THA.LOC104804321 Tarenaya hassleriana HOM05D000476 ORTHO05D005719 4.2e-18 95.5 166 38.0
Hund06447 Selenicereus undatus HOM05D000476 ORTHO05D005719 5.5e-18 95.1 178 38.2
TAR233G0001 Trochodendron aralioides HOM05D000476 ORTHO05D005719 5.5e-18 95.1 120 53.3
COL.COLO4_22490 Corchorus olitorius HOM05D000476 ORTHO05D005719 7.1e-18 94.7 161 37.3
Cpa.g.sc6.308 Carica papaya HOM05D000476 ORTHO05D005719 9.3e-18 94.4 154 38.3
TPR.G2450 Trifolium pratense HOM05D000476 ORTHO05D005719 1.6e-17 93.6 125 45.6
Gohir.A02G173900 Gossypium hirsutum HOM05D000476 ORTHO05D005719 2.7e-17 92.8 159 37.1
Gohir.D03G005900 Gossypium hirsutum HOM05D000476 ORTHO05D005719 3.5e-17 92.4 159 37.1
Gorai.003G006300 Gossypium raimondii HOM05D000476 ORTHO05D005719 3.5e-17 92.4 159 37.1
Dinv14122 Davidia involucrata HOM05D000476 ORTHO05D005719 1.8e-16 90.1 119 52.9
ATR0661G123 Amborella trichopoda HOM05D000476 ORTHO05D005719 6.7e-16 88.2 145 36.6
HPP92_020729 Vanilla planifolia HOM05D000476 ORTHO05D005719 5.7e-15 85.1 149 34.9
GSVIVG01005188001 Vitis vinifera HOM05D000476 ORTHO05D005719 7.4e-15 84.7 143 37.1
GSVIVG01006889001 Vitis vinifera HOM05D000476 ORTHO05D005719 7.4e-15 84.7 143 37.1
CDE09G0394 Ceratophyllum demersum HOM05D000476 ORTHO05D005719 9.6e-15 84.3 145 37.9
Eucgr.I01453 Eucalyptus grandis HOM05D000476 ORTHO05D005719 1.1e-13 80.9 57 66.7
CDE02G2797 Ceratophyllum demersum HOM05D000476 ORTHO05D005719 1.4e-13 80.5 145 37.2
GSVIVG01023992001 Vitis vinifera HOM05D000476 ORTHO05D005719 2.6e-12 76.3 53 66.0
SEGI_17897 Sequoiadendron giganteum HOM05D000476 ORTHO05D005719 5.8e-12 75.1 196 30.1
TAR381G1633 Trochodendron aralioides HOM05D000476 ORTHO05D005719 1.4e-10 70.5 153 35.3
Lj2A484T43 Lonicera japonica HOM05D000476 ORTHO05D005719 1.6e-09 67.0 68 51.5
VMungo0540G2247 Vigna mungo HOM05D002022 ORTHO05D010195 7.4e-07 58.2 49 55.1
AUR62033245 Chenopodium quinoa HOM05D000476 ORTHO05D004987 3.7e-06 55.8 186 29.0
MD02G1014200 Malus domestica HOM05D000476 ORTHO05D005719 4.8e-06 55.5 58 48.3
AUR62021330 Chenopodium quinoa HOM05D000476 ORTHO05D004987 6.3e-06 55.1 186 28.0
VMungo0331G1831 Vigna mungo HOM05D006943 ORTHO05D008565 6.3e-06 55.1 53 58.5
EL10Ac6g13329 Beta vulgaris HOM05D000476 ORTHO05D005719 8.2e-06 54.7 45 55.6
BcaNung04413 Brassica carinata HOM05D000476 ORTHO05D004987 8.2e-06 54.7 167 30.5
BolC1t00887H Brassica oleracea HOM05D000476 ORTHO05D004987 8.2e-06 54.7 163 27.0


User provided reference genes

Program Settings