Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold143G35756 Striga asiatica HOM05D004471 ORTHO05D005345 2.7e-100 368.6 181 100.0
Migut.I00591 Erythranthe guttata HOM05D004471 ORTHO05D005345 4.6e-92 341.3 176 92.6
SGA_v2.0_scaffold40G15614 Striga asiatica HOM05D004471 ORTHO05D005345 4.3e-90 334.7 168 96.4
MSTRG.11237 Avicennia marina HOM05D004471 ORTHO05D005345 1.8e-88 329.3 176 90.3
Nitab4.5_0002323g0100 Nicotiana tabacum HOM05D004471 ORTHO05D005345 7.7e-87 323.9 176 88.6
Nitab4.5_0007843g0010 Nicotiana tabacum HOM05D004471 ORTHO05D005345 1.0e-86 323.6 176 88.1
Solyc04g072410.3 Solanum lycopersicum HOM05D004471 ORTHO05D005345 3.8e-86 321.6 181 85.6
Sopen04g028580 Solanum pennellii HOM05D004471 ORTHO05D005345 6.5e-86 320.9 176 87.5
PGSC0003DMG400027544 Solanum tuberosum HOM05D004471 ORTHO05D005345 6.5e-86 320.9 176 87.5
CAN.G617.9 Capsicum annuum HOM05D004471 ORTHO05D005345 8.5e-86 320.5 176 87.5
Cc02_g32300 Coffea canephora HOM05D004471 ORTHO05D005345 8.5e-86 320.5 176 87.5
Dinv26586 Davidia involucrata HOM05D004471 ORTHO05D005345 1.6e-84 316.2 176 85.2
Peaxi162Scf00071g00744 Petunia axillaris HOM05D004471 ORTHO05D005345 7.9e-84 313.9 176 85.8
CSS0025209 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 1.0e-83 313.5 176 85.2
Actinidia05746 Actinidia chinensis HOM05D004471 ORTHO05D005345 4.3e-82 308.1 176 84.1
SalBow3G0010 Salvia bowleyana HOM05D004471 ORTHO05D005345 7.4e-82 307.4 170 86.5
Lsat_1_v5_gn_5_112921 Lactuca sativa HOM05D004471 ORTHO05D005345 1.7e-81 306.2 176 83.0
Oeu053263.1 Olea europaea HOM05D004471 ORTHO05D005345 3.7e-81 305.1 167 87.4
TWI56G0886 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 1.2e-79 300.1 176 81.2
Oeu041531.1 Olea europaea HOM05D004471 ORTHO05D005345 1.5e-79 299.7 170 83.5
TWI12G0951 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 3.4e-79 298.5 176 80.1
EL10Ac4g09248 Beta vulgaris HOM05D004471 ORTHO05D005345 5.9e-79 297.7 176 81.8
Rhsim05G0148100 Rhododendron simsii HOM05D004471 ORTHO05D005345 1.0e-78 297.0 176 78.4
GSVIVG01021973001 Vitis vinifera HOM05D004471 ORTHO05D005345 1.0e-78 297.0 176 82.4
unitig_744.g24459 Utricularia gibba HOM05D004471 ORTHO05D005345 1.3e-78 296.6 176 79.5
VMungo0540G0886 Vigna mungo HOM05D004471 ORTHO05D005345 2.2e-78 295.8 177 81.9
MELO3C015368.2 Cucumis melo HOM05D004471 ORTHO05D005345 1.4e-77 293.1 176 82.4
PSO170G4164 Papaver somniferum HOM05D004471 ORTHO05D005345 1.4e-77 293.1 179 78.8
Glyma.03G242500 Glycine max HOM05D004471 ORTHO05D005345 2.5e-77 292.4 177 80.2
Lj9A676G54 Lonicera japonica HOM05D004471 ORTHO05D005345 3.2e-77 292.0 164 85.4
ClCG03G016550 Citrullus lanatus HOM05D004471 ORTHO05D005345 5.5e-77 291.2 176 81.2
Phvul.006G096500 Phaseolus vulgaris HOM05D004471 ORTHO05D005345 5.5e-77 291.2 177 81.9
Manes.09G160500 Manihot esculenta HOM05D004471 ORTHO05D005345 9.4e-77 290.4 176 79.0
Glyma.19G240000 Glycine max HOM05D004471 ORTHO05D005345 1.6e-76 289.7 177 79.7
vmacro19660 Vaccinium macrocarpon HOM05D004471 ORTHO05D005345 1.6e-76 289.7 166 83.1
CiPaw.07G011400 Carya illinoinensis HOM05D004471 ORTHO05D005345 2.1e-76 289.3 177 80.8
PSO063G3713 Papaver somniferum HOM05D004471 ORTHO05D005345 2.1e-76 289.3 179 77.7
Sed0002921 Sechium edule HOM05D004471 ORTHO05D005345 4.7e-76 288.1 176 80.1
QL03p002667 Quercus lobata HOM05D004471 ORTHO05D005345 6.1e-76 287.7 175 80.6
Sc09g0003490 Simmondsia chinensis HOM05D004471 ORTHO05D005345 6.1e-76 287.7 177 78.5
CsaV3_1G039430 Cucumis sativus L. HOM05D004471 ORTHO05D005345 3.0e-75 285.4 181 79.6
Lalb_Chr18g0045321 Lupinus albus HOM05D004471 ORTHO05D005345 3.9e-75 285.0 178 77.0
Thecc.05G251800 Theobroma cacao HOM05D004471 ORTHO05D005345 6.7e-75 284.3 176 79.0
Medtr7g114210 Medicago truncatula HOM05D004471 ORTHO05D005345 8.8e-75 283.9 177 79.7
Hund21668 Selenicereus undatus HOM05D004471 ORTHO05D005345 1.1e-74 283.5 176 77.8
Lj2g0025202 Lotus japonicus HOM05D004471 ORTHO05D005345 2.0e-74 282.7 177 78.0
PGR031G3800 Punica granatum HOM05D004471 ORTHO05D005345 2.0e-74 282.7 176 78.4
Duzib177G1077 Durio zibethinus HOM05D004471 ORTHO05D005345 2.6e-74 282.3 176 77.8
TAR629G0585 Trochodendron aralioides HOM05D004471 ORTHO05D005345 3.3e-74 282.0 177 76.3
Gorai.007G263500 Gossypium raimondii HOM05D004471 ORTHO05D005345 4.4e-74 281.6 176 77.3
TPR.G6943 Trifolium pratense HOM05D004471 ORTHO05D005345 4.4e-74 281.6 177 79.1
Atru.chr2.617 Acer truncatum HOM05D004471 ORTHO05D005345 5.7e-74 281.2 167 79.6
Ca_09388_v3 Cicer arietinum L. HOM05D004471 ORTHO05D005345 5.7e-74 281.2 177 79.1
CARHR079310 Cardamine hirsuta HOM05D004471 ORTHO05D005345 7.4e-74 280.8 176 75.0
Gohir.A11G236600 Gossypium hirsutum HOM05D004471 ORTHO05D005345 1.3e-73 280.0 176 76.7
Gohir.D11G247200 Gossypium hirsutum HOM05D004471 ORTHO05D005345 1.3e-73 280.0 176 76.7
HanXRQChr03g0072361 Helianthus annuus HOM05D004471 ORTHO05D005345 1.3e-73 280.0 176 76.7
Hund07017 Selenicereus undatus HOM05D004471 ORTHO05D005345 1.7e-73 279.6 176 77.8
HanXRQChr14g0442561 Helianthus annuus HOM05D004471 ORTHO05D005345 2.2e-73 279.3 176 76.1
Haze_04280 Corylus avellana HOM05D004471 ORTHO05D005345 8.2e-73 277.3 167 82.6
THA.LOC104821699 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 8.2e-73 277.3 176 75.0
Aqoxy5G00550 Aquilegia oxysepala HOM05D004471 ORTHO05D005345 1.1e-72 276.9 175 76.0
Duzib106G0566 Durio zibethinus HOM05D004471 ORTHO05D005345 2.4e-72 275.8 176 76.7
Gohir.A13G100500 Gossypium hirsutum HOM05D004471 ORTHO05D005345 4.1e-72 275.0 176 75.6
Eucgr.B01762 Eucalyptus grandis HOM05D004471 ORTHO05D005345 7.0e-72 274.2 176 75.6
THA.LOC104818664 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 7.0e-72 274.2 177 76.3
Cfa006506 Carpinus fangiana HOM05D004471 ORTHO05D005345 9.1e-72 273.9 161 84.5
Potri.013G031000 Populus trichocarpa HOM05D004471 ORTHO05D005345 9.1e-72 273.9 176 75.6
Thhalv10021604m.g Eutrema salsugineum HOM05D004471 ORTHO05D005345 1.2e-71 273.5 176 73.3
AT3G05000 Arabidopsis thaliana HOM05D004471 ORTHO05D005345 2.0e-71 272.7 176 73.3
DCAR_003298 Daucus carota HOM05D004471 ORTHO05D005345 2.6e-71 272.3 183 74.9
Manes.08G125300 Manihot esculenta HOM05D004471 ORTHO05D005345 2.6e-71 272.3 176 75.6
AL3G15090 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 4.5e-71 271.6 176 72.7
Carub.0003s0423 Capsella rubella HOM05D004471 ORTHO05D005345 5.9e-71 271.2 176 72.7
Nn1g09147 Nelumbo nucifera HOM05D004471 ORTHO05D005345 5.9e-71 271.2 178 75.8
HanXRQChr10g0301731 Helianthus annuus HOM05D004471 ORTHO05D005345 1.0e-70 270.4 176 75.0
FAN02G0766 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.2e-70 269.2 175 73.7
Gohir.D13G104100 Gossypium hirsutum HOM05D004471 ORTHO05D005345 2.2e-70 269.2 171 76.0
FAN05G4093 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.9e-70 268.9 175 73.7
Os09g0244900 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 2.9e-70 268.9 176 72.7
Sp3g03820 Schrenkiella parvula HOM05D004471 ORTHO05D005345 2.9e-70 268.9 176 71.6
Ciclev10002639m.g Citrus clementina HOM05D004471 ORTHO05D005345 3.8e-70 268.5 167 79.0
FvH4_6g04260 Fragaria vesca HOM05D004471 ORTHO05D005345 3.8e-70 268.5 175 73.7
FAN09G1403 Fragaria x ananassa HOM05D004471 ORTHO05D005345 5.0e-70 268.1 175 73.1
Ah.06g192940 Amaranthus hybridus HOM05D004471 ORTHO05D005345 6.5e-70 267.7 166 76.5
AUR62000928 Chenopodium quinoa HOM05D004471 ORTHO05D005345 6.5e-70 267.7 167 78.4
Ah.04g160020 Amaranthus hybridus HOM05D003164 ORTHO05D003575 1.1e-69 266.9 166 77.7
Lalb_Chr06g0167871 Lupinus albus HOM05D004471 ORTHO05D005345 1.1e-69 266.9 175 73.1
arahy.Tifrunner.gnm1.ann1.9WIB0A Arachis hypogaea HOM05D004471 ORTHO05D005345 1.4e-69 266.5 170 74.7
CSS0028112 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 1.9e-69 266.2 154 82.5
AUR62005042 Chenopodium quinoa HOM05D004471 ORTHO05D005345 1.9e-69 266.2 168 77.4
Lalb_Chr02g0148511 Lupinus albus HOM05D004471 ORTHO05D005345 2.5e-69 265.8 177 72.9
Os07g0291100 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 2.5e-69 265.8 176 71.6
Zm00001eb421350 Zea mays HOM05D004471 ORTHO05D005345 2.5e-69 265.8 172 73.3
SEGI_33381 Sequoiadendron giganteum HOM05D004471 ORTHO05D005345 3.2e-69 265.4 178 72.5
MD12G1229300 Malus domestica HOM05D004471 ORTHO05D005345 5.5e-69 264.6 175 73.1
BraA05t22994Z Brassica rapa HOM05D004471 ORTHO05D005345 9.4e-69 263.8 169 73.4
CANSAT54G1584 Cannabis sativa HOM05D004471 ORTHO05D005345 1.2e-68 263.5 176 73.3
MD00G1052700 Malus domestica HOM05D004471 ORTHO05D005345 1.2e-68 263.5 175 72.6
CDE06G1925 Ceratophyllum demersum HOM05D004471 ORTHO05D005345 2.1e-68 262.7 178 69.1
Nn5g28667 Nelumbo nucifera HOM05D004471 ORTHO05D005345 2.1e-68 262.7 174 73.6
BcaC07g40233 Brassica carinata HOM05D004471 ORTHO05D005345 2.7e-68 262.3 169 72.8
A05p42590 Brassica napus HOM05D004471 ORTHO05D005345 2.7e-68 262.3 169 72.8
C05p62270 Brassica napus HOM05D004471 ORTHO05D005345 2.7e-68 262.3 169 72.8
BolC5t34882H Brassica oleracea HOM05D004471 ORTHO05D005345 2.7e-68 262.3 169 72.8
Zm00001eb084990 Zea mays HOM05D004471 ORTHO05D005345 2.7e-68 262.3 172 72.1
ATR0724G032 Amborella trichopoda HOM05D004471 ORTHO05D005345 3.6e-68 261.9 174 74.1
COL.COLO4_36062 Corchorus olitorius HOM05D004471 ORTHO05D005345 1.4e-67 260.0 228 60.5
Potri.005G044300 Populus trichocarpa HOM05D004471 ORTHO05D005345 5.2e-67 258.1 176 71.6
Sabra13G0030200 Salix brachista HOM05D004471 ORTHO05D005345 6.7e-67 257.7 168 74.4
Aa31LG5G15450 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.5e-66 256.5 169 71.0
FAN14G3038 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.0e-66 256.1 171 71.3
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 4.4e-66 255.0 165 75.8
BcaC05g29980 Brassica carinata HOM05D004471 ORTHO05D005345 5.7e-66 254.6 164 72.6
BcaC05g29981 Brassica carinata HOM05D004471 ORTHO05D005345 5.7e-66 254.6 164 72.6
Cfa006508 Carpinus fangiana HOM05D004471 ORTHO05D005345 1.3e-65 253.4 156 80.1
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.7e-65 253.1 167 72.5
RcHm_v2.0_Chr3g0452951 Rosa chinensis HOM05D004471 ORTHO05D005345 1.7e-65 253.1 176 70.5
arahy.Tifrunner.gnm1.ann1.HP6SUR Arachis hypogaea HOM05D004471 ORTHO05D005345 2.2e-65 252.7 177 68.4
FAN09G1313 Fragaria x ananassa HOM05D004471 ORTHO05D005345 3.7e-65 251.9 167 71.9
arahy.Tifrunner.gnm1.ann1.NV1QRL Arachis hypogaea HOM05D004471 ORTHO05D005345 8.2e-65 250.8 177 68.4
Prupe.6G334800 Prunus persica HOM05D004471 ORTHO05D005345 8.2e-65 250.8 168 71.4
SHI18238 Sapria himalayana HOM05D004471 ORTHO05D005345 7.0e-64 247.7 174 66.7
HPP92_003010 Vanilla planifolia HOM05D004471 ORTHO05D005345 7.0e-64 247.7 176 67.6
Mapoly0002s0104 Marchantia polymorpha HOM05D004471 ORTHO05D005345 1.2e-63 246.9 177 66.1
arahy.Tifrunner.gnm1.ann1.M2LFCZ Arachis hypogaea HOM05D004471 ORTHO05D005345 7.7e-63 244.2 170 68.2
MD12G1230100 Malus domestica HOM05D004471 ORTHO05D005345 7.7e-63 244.2 159 73.6
Sabra05G0041100 Salix brachista HOM05D004471 ORTHO05D005345 1.3e-62 243.4 173 68.8
Pp3c4_10030 Physcomitrium patens HOM05D004471 ORTHO05D005345 3.8e-62 241.9 179 66.5
SMO347G0444 Selaginella moellendorffii HOM05D004471 ORTHO05D005345 3.8e-62 241.9 174 66.7
MBI07_g44660_MAGBIO Magnolia biondii HOM05D004471 ORTHO05D005345 1.9e-61 239.6 157 72.0
arahy.Tifrunner.gnm1.ann1.MZ802S Arachis hypogaea HOM05D004471 ORTHO05D005345 2.5e-61 239.2 166 69.3
HPP92_027546 Vanilla planifolia HOM05D004471 ORTHO05D005345 1.8e-59 233.0 167 65.9
Cc00_g16770 Coffea canephora HOM05D004471 ORTHO05D005345 8.8e-59 230.7 123 87.8
Cc00_g29480 Coffea canephora HOM05D004471 ORTHO05D005345 8.8e-59 230.7 123 87.8
DCAR_022266 Daucus carota HOM05D004471 ORTHO05D005345 2.2e-54 216.1 171 62.0
DCAR_030062 Daucus carota HOM05D004471 ORTHO05D005345 5.0e-54 214.9 171 60.8
Psat3g008960 Pisum sativum HOM05D004471 ORTHO05D005345 5.2e-51 204.9 124 81.5
Cpa.g.sc117.10 Carica papaya HOM05D004471 ORTHO05D005345 7.5e-50 201.1 114 82.5
AL3G15360 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 2.8e-49 199.1 123 74.0
Eucgr.L02626 Eucalyptus grandis HOM05D004471 ORTHO05D005345 6.3e-49 198.0 123 77.2
Lsat_1_v5_gn_9_110141 Lactuca sativa HOM05D004471 ORTHO05D005345 6.3e-49 198.0 138 68.8
Gorai.013G116700 Gossypium raimondii HOM05D004471 ORTHO05D005345 2.9e-46 189.1 116 78.4
CBR_g38080 Chara braunii HOM05D004471 ORTHO05D005345 3.3e-45 185.7 191 49.2
Cre16.g663650 Chlamydomonas reinhardtii HOM05D004471 ORTHO05D005345 1.3e-38 163.7 178 50.0
CSS0014300 Camellia sinensis var. sinensis HOM05D002365 ORTHO05D005345 2.8e-36 156.0 84 85.7
Aa31LG1G24890 Aethionema arabicum HOM05D004471 ORTHO05D005345 6.8e-35 151.4 98 69.4
Aa31LG1G21870 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.2e-34 150.6 105 66.7
Aa31LG1G26450 Aethionema arabicum HOM05D004471 ORTHO05D005345 4.4e-34 148.7 102 68.6
QL03p002083 Quercus lobata HOM05D004471 ORTHO05D005345 1.3e-30 137.1 95 71.6
RcHm_v2.0_Chr5g0055691 Rosa chinensis HOM05D004471 ORTHO05D005345 2.7e-23 112.8 108 55.6
MCO16G564 Micromonas commoda HOM05D004471 ORTHO05D005345 1.0e-22 110.9 184 35.9
arahy.Tifrunner.gnm1.ann1.BCR285 Arachis hypogaea HOM05D004471 ORTHO05D005345 2.3e-22 109.8 60 78.3
PRCOL_00002528 Prasinoderma coloniale HOM05D004471 ORTHO05D005345 5.6e-21 105.1 174 37.4
Aa31LG1G25270 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.6e-20 103.6 117 47.9
Pp3c13_13330 Physcomitrium patens HOM05D004471 ORTHO05D005345 1.6e-20 103.6 116 44.8
Cfa024495 Carpinus fangiana HOM05D004471 ORTHO05D005345 2.3e-19 99.8 141 41.8
CBR_g12958 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-18 97.1 97 51.5
Dinv27603 Davidia involucrata HOM05D004471 ORTHO05D005345 3.0e-14 82.8 54 74.1
FAN05G5407 Fragaria x ananassa HOM05D012224 ORTHO05D017959 9.6e-13 77.8 54 66.7
Dinv27604 Davidia involucrata HOM05D004471 ORTHO05D005345 2.1e-12 76.6 52 73.1
FAN02G2374 Fragaria x ananassa HOM05D012224 ORTHO05D017959 2.4e-11 73.2 50 70.0
QL03p002537 Quercus lobata HOM05D004471 ORTHO05D005345 6.8e-11 71.6 63 61.9
QL03p001871 Quercus lobata HOM05D004471 ORTHO05D337354 5.1e-06 55.5 69 47.8


User provided reference genes

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