Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold143G35747 Striga asiatica HOM05D017394 ORTHO05D001737 1.9e-107 392.5 199 100.0
SGA_v2.0_scaffold142G35665 Striga asiatica HOM05D017394 ORTHO05D001737 2.6e-43 179.5 142 72.5
SGA_v2.0_scaffold50G18424 Striga asiatica HOM05D017394 ORTHO05D001737 5.4e-33 145.2 112 73.2
SGA_v2.0_scaffold332G48948 Striga asiatica HOM05D017394 ORTHO05D001737 1.9e-30 136.7 94 73.4
SGA_v2.0_scaffold37G14762 Striga asiatica HOM05D017394 ORTHO05D001737 5.5e-30 135.2 110 70.9
SGA_v2.0_scaffold113G31714 Striga asiatica HOM05D017394 ORTHO05D001737 2.1e-29 133.3 110 70.0
SGA_v2.0_scaffold191G40486 Striga asiatica HOM05D017394 ORTHO05D001737 1.6e-21 107.1 143 51.7
Oeu019262.1 Olea europaea HOM05D001878 ORTHO05D001737 3.2e-17 92.8 107 51.4
unitig_748.g7119 Utricularia gibba HOM05D001878 ORTHO05D001737 3.2e-17 92.8 74 63.5
Oeu037430.1 Olea europaea HOM05D001878 ORTHO05D001737 4.1e-17 92.4 113 51.3
unitig_0.g2758 Utricularia gibba HOM05D001878 ORTHO05D001737 5.9e-16 88.6 123 46.3
Oeu026349.1 Olea europaea HOM05D001878 ORTHO05D001737 3.0e-15 86.3 93 54.8
MSTRG.4940 Avicennia marina HOM05D001878 ORTHO05D001737 1.1e-14 84.3 92 53.3
Glyma.18G248000 Glycine max HOM05D001878 ORTHO05D001737 4.3e-14 82.4 84 52.4
Sabra14G0036200 Salix brachista HOM05D001878 ORTHO05D001737 7.3e-14 81.6 92 46.7
Phvul.008G049300 Phaseolus vulgaris HOM05D001878 ORTHO05D001737 9.5e-14 81.3 84 51.2
Cc02_g25370 Coffea canephora HOM05D001878 ORTHO05D001737 1.2e-13 80.9 70 57.1
Rhsim01G0141600 Rhododendron simsii HOM05D001878 ORTHO05D001737 1.2e-13 80.9 89 51.7
Sabra14G0038300 Salix brachista HOM05D001878 ORTHO05D001737 1.2e-13 80.9 89 47.2
SalBow5G0976 Salvia bowleyana HOM05D007698 ORTHO05D009663 1.6e-13 80.5 102 46.1
SalBow5G4762 Salvia bowleyana HOM05D007698 ORTHO05D009663 1.6e-13 80.5 102 46.1
VMungo1383G0933 Vigna mungo HOM05D001878 ORTHO05D001737 4.7e-13 79.0 84 50.0
PGSC0003DMG400001696 Solanum tuberosum HOM05D001878 ORTHO05D001737 6.2e-13 78.6 73 56.2
Lsat_1_v5_gn_4_40001 Lactuca sativa HOM05D001878 ORTHO05D001737 8.0e-13 78.2 118 44.1
Nitab4.5_0011684g0010 Nicotiana tabacum HOM05D001878 ORTHO05D001737 8.0e-13 78.2 71 57.7
TWI14G1354 Tripterygium wilfordii HOM05D001878 ORTHO05D001737 8.0e-13 78.2 91 46.2
CAN.G756.42 Capsicum annuum HOM05D001878 ORTHO05D001737 1.1e-12 77.8 57 63.2
Medtr7g081190 Medicago truncatula HOM05D001878 ORTHO05D001737 1.1e-12 77.8 86 45.3
Nitab4.5_0000563g0150 Nicotiana tabacum HOM05D001878 ORTHO05D001737 1.1e-12 77.8 71 57.7
Glyma.09G245300 Glycine max HOM05D001878 ORTHO05D001737 1.4e-12 77.4 81 50.6
Psat3g099720 Pisum sativum HOM05D001878 ORTHO05D001737 1.4e-12 77.4 86 50.0
COL.COLO4_18392 Corchorus olitorius HOM05D001878 ORTHO05D001737 2.3e-12 76.6 72 52.8
Glyma.07G254502 Glycine max HOM05D001878 ORTHO05D001737 2.3e-12 76.6 84 47.6
Gohir.A08G139800 Gossypium hirsutum HOM05D001878 ORTHO05D001737 2.3e-12 76.6 72 51.4
Gohir.D08G160800 Gossypium hirsutum HOM05D001878 ORTHO05D001737 2.3e-12 76.6 72 51.4
Gorai.004G167100 Gossypium raimondii HOM05D001878 ORTHO05D001737 2.3e-12 76.6 72 51.4
Sopen01g035660 Solanum pennellii HOM05D001878 ORTHO05D001737 2.3e-12 76.6 45 71.1
Glyma.08G051800 Glycine max HOM05D001878 ORTHO05D001737 3.1e-12 76.3 72 50.0
Peaxi162Scf00853g00433 Petunia axillaris HOM05D001878 ORTHO05D001737 3.1e-12 76.3 46 67.4
Solyc01g088820.2 Solanum lycopersicum HOM05D001878 ORTHO05D001737 5.2e-12 75.5 71 53.5
CiPaw.14G018500 Carya illinoinensis HOM05D001878 ORTHO05D001737 6.8e-12 75.1 80 48.8
HanXRQChr01g0017711 Helianthus annuus HOM05D001878 ORTHO05D001737 6.8e-12 75.1 59 57.6
Potri.014G051200 Populus trichocarpa HOM05D001878 ORTHO05D001737 6.8e-12 75.1 114 41.2
BcaC02g12281 Brassica carinata HOM05D001878 ORTHO05D001737 8.9e-12 74.7 54 55.6
C04p05690 Brassica napus HOM05D001878 ORTHO05D001737 8.9e-12 74.7 54 55.6
Sp4g26780 Schrenkiella parvula HOM05D001878 ORTHO05D001737 8.9e-12 74.7 50 62.0
Carub.0004s2728 Capsella rubella HOM05D001878 ORTHO05D001737 1.2e-11 74.3 84 47.6
Psat4g031080 Pisum sativum HOM05D001878 ORTHO05D001737 1.2e-11 74.3 110 42.7
Atru.chr5.102 Acer truncatum HOM05D001878 ORTHO05D001737 1.5e-11 73.9 79 48.1
BcaB02g08851 Brassica carinata HOM05D001878 ORTHO05D001737 1.5e-11 73.9 70 50.0
BcaC02g12279 Brassica carinata HOM05D001878 ORTHO05D001737 1.5e-11 73.9 70 50.0
Potri.002G139500 Populus trichocarpa HOM05D001878 ORTHO05D001737 2.0e-11 73.6 122 38.5
Aa31LG1G26270 Aethionema arabicum HOM05D001878 ORTHO05D001737 2.6e-11 73.2 76 46.1
Lj1g0024989 Lotus japonicus HOM05D001878 ORTHO05D001737 2.6e-11 73.2 79 46.8
CiPaw.13G024400 Carya illinoinensis HOM05D001878 ORTHO05D001737 3.4e-11 72.8 93 46.2
Thhalv10001488m.g Eutrema salsugineum HOM05D001878 ORTHO05D001737 3.4e-11 72.8 51 58.8
PSO782G1295 Papaver somniferum HOM05D001878 ORTHO05D001737 3.4e-11 72.8 70 48.6
Phvul.003G097500 Phaseolus vulgaris HOM05D001878 ORTHO05D001737 3.4e-11 72.8 59 55.9
PGR042G1541 Punica granatum HOM05D001878 ORTHO05D001737 3.4e-11 72.8 92 43.5
Cpa.g.sc41.83 Carica papaya HOM05D001878 ORTHO05D001737 4.4e-11 72.4 103 39.8
PSO063G3234 Papaver somniferum HOM05D001878 ORTHO05D001737 4.4e-11 72.4 75 45.3
QL04p028592 Quercus lobata HOM05D001878 ORTHO05D001737 4.4e-11 72.4 88 44.3
QL04p028713 Quercus lobata HOM05D001878 ORTHO05D001737 4.4e-11 72.4 88 44.3
Sc14g0001740 Simmondsia chinensis HOM05D001878 ORTHO05D001737 4.4e-11 72.4 70 48.6
TWI59G0138 Tripterygium wilfordii HOM05D001878 ORTHO05D001737 4.4e-11 72.4 123 39.0
HPP92_012963 Vanilla planifolia HOM05D001878 ORTHO05D001737 4.4e-11 72.4 52 63.5
VMungo1215G1720 Vigna mungo HOM05D001878 ORTHO05D001737 4.4e-11 72.4 73 50.7
CSS0031983 Camellia sinensis var. sinensis HOM05D001878 ORTHO05D001737 5.8e-11 72.0 90 45.6
Lsat_1_v5_gn_1_84200 Lactuca sativa HOM05D001878 ORTHO05D001737 5.8e-11 72.0 113 39.8
BolC4t22199H Brassica oleracea HOM05D001878 ORTHO05D001737 7.5e-11 71.6 71 47.9
Lsat_1_v5_gn_1_84280 Lactuca sativa HOM05D001878 ORTHO05D001737 7.5e-11 71.6 113 40.7
Ah.01g019780 Amaranthus hybridus HOM05D001878 ORTHO05D001737 9.8e-11 71.2 42 66.7
ECA248G2444 Erigeron canadensis HOM05D001878 ORTHO05D001737 9.8e-11 71.2 87 42.5
BcaC01g05198 Brassica carinata HOM05D001878 ORTHO05D001737 1.3e-10 70.9 67 49.3
C03p29660 Brassica napus HOM05D001878 ORTHO05D001737 1.3e-10 70.9 67 49.3
Ca_21569_v3 Cicer arietinum L. HOM05D001878 ORTHO05D001737 1.3e-10 70.9 75 49.3
Thecc.01G400100 Theobroma cacao HOM05D001878 ORTHO05D001737 1.3e-10 70.9 54 59.3
TAR629G0579 Trochodendron aralioides HOM05D001878 ORTHO05D001737 1.3e-10 70.9 70 48.6
BcaB04g18388 Brassica carinata HOM05D001878 ORTHO05D001737 1.7e-10 70.5 61 52.5
BolC3t15314H Brassica oleracea HOM05D001878 ORTHO05D001737 1.7e-10 70.5 67 49.3
BraA03t11694Z Brassica rapa HOM05D001878 ORTHO05D001737 1.7e-10 70.5 67 50.7
Ciclev10020863m.g Citrus clementina HOM05D001878 ORTHO05D001737 1.7e-10 70.5 39 71.8
Medtr4g117990 Medicago truncatula HOM05D001878 ORTHO05D001737 1.7e-10 70.5 87 44.8
A03p24870 Brassica napus HOM05D001878 ORTHO05D001737 2.2e-10 70.1 67 50.7
Migut.N01727 Erythranthe guttata HOM05D001878 ORTHO05D001737 2.2e-10 70.1 35 80.0
A05p04860 Brassica napus HOM05D001878 ORTHO05D001737 2.9e-10 69.7 71 46.5
BraA05t19461Z Brassica rapa HOM05D001878 ORTHO05D001737 2.9e-10 69.7 71 46.5
CANSAT25G3641 Cannabis sativa HOM05D001878 ORTHO05D001737 2.9e-10 69.7 62 54.8
DCAR_029489 Daucus carota HOM05D001878 ORTHO05D001737 2.9e-10 69.7 60 53.3
Lalb_Chr13g0290701 Lupinus albus HOM05D001878 ORTHO05D001737 2.9e-10 69.7 101 41.6
CARHR139940 Cardamine hirsuta HOM05D001878 ORTHO05D001737 3.7e-10 69.3 83 44.6
TAR375G1013 Trochodendron aralioides HOM05D001878 ORTHO05D001737 3.7e-10 69.3 41 65.9
AT2G44730 Arabidopsis thaliana HOM05D001878 ORTHO05D001737 4.9e-10 68.9 75 44.0
BcaC01g05201 Brassica carinata HOM05D001878 ORTHO05D001737 4.9e-10 68.9 70 45.7
Cfa011046 Carpinus fangiana HOM05D001878 ORTHO05D001737 6.4e-10 68.6 87 42.5
Haze_02877 Corylus avellana HOM05D001878 ORTHO05D001737 6.4e-10 68.6 87 42.5
Nn1g00752 Nelumbo nucifera HOM05D001878 ORTHO05D001737 6.4e-10 68.6 54 55.6
BcaC01g05200 Brassica carinata HOM05D001878 ORTHO05D001737 8.3e-10 68.2 67 46.3
Gohir.A12G212500 Gossypium hirsutum HOM05D001878 ORTHO05D001737 8.3e-10 68.2 44 59.1
Manes.05G056800 Manihot esculenta HOM05D001878 ORTHO05D001737 8.3e-10 68.2 88 43.2
SHI13627 Sapria himalayana HOM05D001878 ORTHO05D001737 8.3e-10 68.2 72 48.6
CDE04G2863 Ceratophyllum demersum HOM05D001878 ORTHO05D001737 1.1e-09 67.8 93 39.8
Duzib133G0474 Durio zibethinus HOM05D001878 ORTHO05D001737 1.1e-09 67.8 83 44.6
MBI04_g13859_MAGBIO Magnolia biondii HOM05D001878 ORTHO05D001737 1.4e-09 67.4 58 53.4
SalBow7G3666 Salvia bowleyana HOM05D001878 ORTHO05D001737 1.9e-09 67.0 82 45.1
TPR.G28130 Trifolium pratense HOM05D001878 ORTHO05D001737 1.9e-09 67.0 91 41.8
Ca_08044_v3 Cicer arietinum L. HOM05D001878 ORTHO05D001737 2.4e-09 66.6 90 43.3
Gohir.D12G215000 Gossypium hirsutum HOM05D001878 ORTHO05D001737 2.4e-09 66.6 44 56.8
Gorai.008G230600 Gossypium raimondii HOM05D001878 ORTHO05D001737 2.4e-09 66.6 44 56.8
Thecc.03G239800 Theobroma cacao HOM05D001878 ORTHO05D001737 2.4e-09 66.6 54 51.9
BraA01t01951Z Brassica rapa HOM05D001878 ORTHO05D001737 3.2e-09 66.2 46 54.3
RcHm_v2.0_Chr1g0345291 Rosa chinensis HOM05D001878 ORTHO05D001737 3.2e-09 66.2 47 61.7
GSVIVG01003683001 Vitis vinifera HOM05D001878 ORTHO05D001737 4.1e-09 65.9 70 47.1
Duzib068G1299 Durio zibethinus HOM05D001878 ORTHO05D001737 5.4e-09 65.5 54 50.0
MD02G1219900 Malus domestica HOM05D001878 ORTHO05D001737 5.4e-09 65.5 92 39.1
AL4G43780 Arabidopsis lyrata HOM05D001878 ORTHO05D001737 7.0e-09 65.1 83 41.0
Dinv44041 Davidia involucrata HOM05D001878 ORTHO05D001737 7.0e-09 65.1 35 74.3
Lalb_Chr07g0177461 Lupinus albus HOM05D001878 ORTHO05D001737 7.0e-09 65.1 61 49.2
EL10Ac9g21782 Beta vulgaris HOM05D001878 ORTHO05D001737 9.2e-09 64.7 35 71.4
MD07G1097300 Malus domestica HOM05D001878 ORTHO05D001737 9.2e-09 64.7 92 39.1
BcaNung00128 Brassica carinata HOM05D001878 ORTHO05D001737 1.2e-08 64.3 46 58.7
FAN10G3061 Fragaria x ananassa HOM05D001878 ORTHO05D001737 1.2e-08 64.3 90 44.4
Duzib268G0102 Durio zibethinus HOM05D001878 ORTHO05D001737 1.6e-08 63.9 83 43.4
Manes.02G045500 Manihot esculenta HOM05D001878 ORTHO05D001737 1.6e-08 63.9 42 61.9
THA.LOC104802500 Tarenaya hassleriana HOM05D001878 ORTHO05D001737 2.0e-08 63.5 39 64.1
BcaB04g18385 Brassica carinata HOM05D001878 ORTHO05D001737 2.7e-08 63.2 46 52.2
BolC1t02491H Brassica oleracea HOM05D001878 ORTHO05D001737 2.7e-08 63.2 46 52.2
Lj4g0024312 Lotus japonicus HOM05D001878 ORTHO05D001737 2.7e-08 63.2 52 55.8
Aa31LG9G15110 Aethionema arabicum HOM05D001878 ORTHO05D001737 3.5e-08 62.8 90 36.7
Aqoxy3G02646 Aquilegia oxysepala HOM05D001878 ORTHO05D001737 3.5e-08 62.8 55 49.1
AUR62016671 Chenopodium quinoa HOM05D001878 ORTHO05D001737 3.5e-08 62.8 79 44.3
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 4.6e-08 62.4 116 33.6
THA.LOC104812737 Tarenaya hassleriana HOM05D001878 ORTHO05D001737 4.6e-08 62.4 96 36.5
Oeu060056.1 Olea europaea HOM05D001878 ORTHO05D001737 7.8e-08 61.6 58 50.0
TAR636G3009 Trochodendron aralioides HOM05D001878 ORTHO05D001737 7.8e-08 61.6 65 47.7
MSTRG.10274 Avicennia marina HOM05D001878 ORTHO05D001737 1.0e-07 61.2 66 48.5
FAN10G3306 Fragaria x ananassa HOM05D001878 ORTHO05D001737 1.0e-07 61.2 45 60.0
Sed0011776 Sechium edule HOM05D001878 ORTHO05D001737 1.0e-07 61.2 50 54.0
A01p20250 Brassica napus HOM05D001887 ORTHO05D003756 1.7e-07 60.5 39 56.4
C01p25390 Brassica napus HOM05D001887 ORTHO05D003756 1.7e-07 60.5 39 56.4
COL.COLO4_06677 Corchorus olitorius HOM05D001878 ORTHO05D001737 1.7e-07 60.5 53 43.4
Sabra01G0120400 Salix brachista HOM05D001878 ORTHO05D001737 2.3e-07 60.1 42 57.1
FAN01G1421 Fragaria x ananassa HOM05D001878 ORTHO05D001737 3.0e-07 59.7 87 41.4
FvH4_7g09240 Fragaria vesca HOM05D001878 ORTHO05D001737 3.9e-07 59.3 87 41.4
FAN03G2199 Fragaria x ananassa HOM05D001878 ORTHO05D001737 3.9e-07 59.3 87 41.4
FAN06G1067 Fragaria x ananassa HOM05D001878 ORTHO05D001737 5.0e-07 58.9 44 59.1
Potri.003G083800 Populus trichocarpa HOM05D001878 ORTHO05D001737 5.0e-07 58.9 53 49.1
Sc01g0007970 Simmondsia chinensis HOM05D001878 ORTHO05D001737 5.0e-07 58.9 48 50.0
Sc07g0009050 Simmondsia chinensis HOM05D001878 ORTHO05D001737 5.0e-07 58.9 83 38.6
BolC8t48429H Brassica oleracea HOM05D001887 ORTHO05D003756 6.6e-07 58.5 40 55.0
MELO3C006287.2 Cucumis melo HOM05D001878 ORTHO05D001737 6.6e-07 58.5 85 43.5
CsaV3_3G010680 Cucumis sativus L. HOM05D001878 ORTHO05D001737 6.6e-07 58.5 85 43.5
SGA_v2.0_scaffold288G47234 Striga asiatica HOM05D017394 ORTHO05D001737 6.6e-07 58.5 48 68.8
TWI15G1115 Tripterygium wilfordii HOM05D001878 ORTHO05D001737 6.6e-07 58.5 51 51.0
Zm00001eb023870 Zea mays HOM05D001878 ORTHO05D001737 6.6e-07 58.5 39 59.0
SalBow1G1933 Salvia bowleyana HOM05D001878 ORTHO05D001737 8.6e-07 58.2 69 46.4
Lalb_Chr12g0210451 Lupinus albus HOM05D001878 ORTHO05D001737 1.1e-06 57.8 34 64.7
SalBow4G2533 Salvia bowleyana HOM05D001878 ORTHO05D001737 1.1e-06 57.8 65 40.0
Gohir.A08G162900 Gossypium hirsutum HOM05D001878 ORTHO05D001737 1.5e-06 57.4 88 34.1
Hma1.2p1_0632F.1_g192450 Hydrangea macrophylla HOM05D001878 ORTHO05D001737 1.5e-06 57.4 35 65.7
Atru.chr9.1204 Acer truncatum HOM05D001878 ORTHO05D001737 1.9e-06 57.0 41 48.8
FvH4_5g20390 Fragaria vesca HOM05D001878 ORTHO05D001737 1.9e-06 57.0 51 47.1
FAN08G0760 Fragaria x ananassa HOM05D006150 ORTHO05D007745 1.9e-06 57.0 47 48.9
FAN18G4122 Fragaria x ananassa HOM05D001878 ORTHO05D001737 1.9e-06 57.0 51 47.1
Sabra03G0054300 Salix brachista HOM05D001878 ORTHO05D001737 1.9e-06 57.0 53 47.2
AUR62007169 Chenopodium quinoa HOM05D001878 ORTHO05D001737 2.5e-06 56.6 92 41.3
Ah.12g053970 Amaranthus hybridus HOM05D001878 ORTHO05D001737 3.3e-06 56.2 87 39.1
Ciclev10024664m.g Citrus clementina HOM05D001878 ORTHO05D001737 3.3e-06 56.2 48 45.8
Nitab4.5_0006594g0090 Nicotiana tabacum HOM05D001878 ORTHO05D001737 3.3e-06 56.2 84 38.1
CSS0013278 Camellia sinensis var. sinensis HOM05D001878 ORTHO05D001737 4.3e-06 55.8 54 46.3
Ah.08g213030 Amaranthus hybridus HOM05D001878 ORTHO05D001737 5.6e-06 55.5 65 46.2
EL10Ac5g12265 Beta vulgaris HOM05D001878 ORTHO05D001737 5.6e-06 55.5 91 39.6
DCAR_008328 Daucus carota HOM05D001878 ORTHO05D001737 5.6e-06 55.5 49 44.9
Dinv25137 Davidia involucrata HOM05D001878 ORTHO05D001737 5.6e-06 55.5 49 49.0
Peaxi162Scf00102g00086 Petunia axillaris HOM05D001878 ORTHO05D001737 5.6e-06 55.5 84 34.5
Potri.001G150600 Populus trichocarpa HOM05D001878 ORTHO05D001737 5.6e-06 55.5 51 49.0
Dinv43604 Davidia involucrata HOM05D001878 ORTHO05D001737 7.3e-06 55.1 82 41.5
HanXRQChr14g0443931 Helianthus annuus HOM05D001878 ORTHO05D001737 9.5e-06 54.7 52 50.0
Lalb_Chr07g0195291 Lupinus albus HOM05D001878 ORTHO05D001737 9.5e-06 54.7 75 38.7
Zm00001eb390910 Zea mays HOM05D001878 ORTHO05D001737 9.5e-06 54.7 80 38.8


User provided reference genes

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