Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold143G35744 Striga asiatica HOM05D003980 ORTHO05D005301 3.1e-122 441.8 225 100.0
SalBow7G4845 Salvia bowleyana HOM05D003980 ORTHO05D005301 2.3e-93 345.9 219 79.9
MSTRG.11233 Avicennia marina HOM05D003980 ORTHO05D005301 6.8e-93 344.4 219 81.7
Migut.I00610 Erythranthe guttata HOM05D003980 ORTHO05D005301 1.6e-89 333.2 214 80.4
Cc04_g05920 Coffea canephora HOM05D003980 ORTHO05D005301 3.2e-82 308.9 214 75.2
unitig_22.g6271 Utricularia gibba HOM05D003980 ORTHO05D005301 3.0e-80 302.4 204 76.5
Nitab4.5_0002450g0020 Nicotiana tabacum HOM05D003980 ORTHO05D005301 1.8e-77 293.1 205 74.1
Potri.015G105000 Populus trichocarpa HOM05D003980 ORTHO05D005301 1.8e-77 293.1 204 74.5
COL.COLO4_37237 Corchorus olitorius HOM05D003980 ORTHO05D005301 4.0e-77 292.0 205 72.7
Potri.012G105800 Populus trichocarpa HOM05D003980 ORTHO05D005301 6.8e-77 291.2 206 73.8
Ciclev10030650m.g Citrus clementina HOM05D003980 ORTHO05D005301 1.5e-76 290.0 205 73.2
Sopen03g037250 Solanum pennellii HOM05D003980 ORTHO05D005301 1.5e-76 290.0 219 71.7
Solyc03g118350.4 Solanum lycopersicum HOM05D003980 ORTHO05D005301 2.0e-76 289.7 219 71.2
PGSC0003DMG401014249 Solanum tuberosum HOM05D003980 ORTHO05D005301 2.6e-76 289.3 204 74.0
Dinv13736 Davidia involucrata HOM05D003980 ORTHO05D005301 3.4e-76 288.9 207 72.9
Sabra12G0078100 Salix brachista HOM05D003980 ORTHO05D005301 1.7e-75 286.6 206 73.8
Gohir.A09G248100 Gossypium hirsutum HOM05D003980 ORTHO05D005301 2.9e-75 285.8 209 71.3
Gohir.D09G248900 Gossypium hirsutum HOM05D003980 ORTHO05D005301 2.9e-75 285.8 209 71.3
Manes.06G125700 Manihot esculenta HOM05D003980 ORTHO05D005301 1.1e-74 283.9 205 73.2
TWI14G0519 Tripterygium wilfordii HOM05D003980 ORTHO05D005301 1.1e-74 283.9 205 72.2
Haze_07113 Corylus avellana HOM05D003980 ORTHO05D005301 1.4e-74 283.5 216 69.0
Gorai.006G273300 Gossypium raimondii HOM05D003980 ORTHO05D005301 1.4e-74 283.5 205 72.2
Cfa018720 Carpinus fangiana HOM05D003980 ORTHO05D005301 1.9e-74 283.1 216 68.5
Peaxi162Scf00314g00535 Petunia axillaris HOM05D003980 ORTHO05D005301 2.4e-74 282.7 203 71.9
Rhsim08G0195900 Rhododendron simsii HOM05D003980 ORTHO05D005301 1.2e-73 280.4 205 73.2
THA.LOC104821537 Tarenaya hassleriana HOM05D003980 ORTHO05D005301 1.6e-73 280.0 205 70.7
Thecc.03G138500 Theobroma cacao HOM05D003980 ORTHO05D005301 6.0e-73 278.1 205 70.7
QL10p000901 Quercus lobata HOM05D003980 ORTHO05D005301 1.3e-72 276.9 204 70.1
EL10Ac5g11306 Beta vulgaris HOM05D003980 ORTHO05D005301 2.3e-72 276.2 226 65.5
Duzib205G0834 Durio zibethinus HOM05D003980 ORTHO05D005301 2.3e-72 276.2 205 69.8
Atru.chr6.1901 Acer truncatum HOM05D003980 ORTHO05D005301 5.1e-72 275.0 205 70.7
TWI39G0366 Tripterygium wilfordii HOM05D003980 ORTHO05D005301 1.9e-71 273.1 205 71.2
RcHm_v2.0_Chr7g0188941 Rosa chinensis HOM05D003980 ORTHO05D005301 3.3e-71 272.3 209 67.9
Duzib084G0479 Durio zibethinus HOM05D003980 ORTHO05D005301 2.1e-70 269.6 205 69.3
MD14G1148800 Malus domestica HOM05D003980 ORTHO05D005301 2.1e-70 269.6 204 68.6
DCAR_025658 Daucus carota HOM05D003980 ORTHO05D005301 2.8e-70 269.2 216 67.6
Lsat_1_v5_gn_4_84700 Lactuca sativa HOM05D003980 ORTHO05D005301 3.6e-70 268.9 207 68.6
Hund10056 Selenicereus undatus HOM05D003980 ORTHO05D005301 1.4e-69 266.9 205 67.8
Thhalv10003616m.g Eutrema salsugineum HOM05D003980 ORTHO05D005301 2.4e-69 266.2 206 66.5
Lj9A485G82 Lonicera japonica HOM05D003980 ORTHO05D005301 3.1e-69 265.8 205 69.8
GSVIVG01008633001 Vitis vinifera HOM05D003980 ORTHO05D005301 3.1e-69 265.8 207 68.6
TAR371G0735 Trochodendron aralioides HOM05D003980 ORTHO05D005301 6.8e-69 264.6 205 68.3
FvH4_5g09220 Fragaria vesca HOM05D003980 ORTHO05D005301 8.9e-69 264.2 202 68.8
HanXRQChr16g0498871 Helianthus annuus HOM05D003980 ORTHO05D005301 8.9e-69 264.2 207 67.6
HanXRQChr09g0273931 Helianthus annuus HOM05D003980 ORTHO05D005301 2.0e-68 263.1 207 67.1
MD06G1132400 Malus domestica HOM05D003980 ORTHO05D005301 2.6e-68 262.7 203 68.0
CANSAT56G3290 Cannabis sativa HOM05D003980 ORTHO05D005301 4.4e-68 261.9 204 68.1
Prupe.5G143400 Prunus persica HOM05D003980 ORTHO05D005301 7.6e-68 261.2 210 67.6
Ah.02g114660 Amaranthus hybridus HOM05D003980 ORTHO05D005301 9.9e-68 260.8 226 64.2
Hund02497 Selenicereus undatus HOM05D003980 ORTHO05D005301 2.9e-67 259.2 213 66.7
vmacro19166 Vaccinium macrocarpon HOM05D003980 ORTHO05D005301 2.9e-67 259.2 246 60.6
Nitab4.5_0000663g0190 Nicotiana tabacum HOM05D003980 ORTHO05D005301 6.4e-67 258.1 181 75.1
Aa31LG11G3070 Aethionema arabicum HOM05D003980 ORTHO05D005301 8.4e-67 257.7 204 64.7
ECA232G4466 Erigeron canadensis HOM05D003980 ORTHO05D005301 1.1e-66 257.3 210 67.6
Sp2g23510 Schrenkiella parvula HOM05D003980 ORTHO05D005301 2.4e-66 256.1 205 64.9
BcaNung01844 Brassica carinata HOM05D003980 ORTHO05D005301 5.4e-66 255.0 206 64.6
C07p43870 Brassica napus HOM05D003980 ORTHO05D005301 5.4e-66 255.0 206 64.6
BolC7t44915H Brassica oleracea HOM05D003980 ORTHO05D005301 5.4e-66 255.0 206 64.6
A06p34620 Brassica napus HOM05D003980 ORTHO05D005301 7.1e-66 254.6 206 64.1
Sc04g0000260 Simmondsia chinensis HOM05D003980 ORTHO05D005301 7.1e-66 254.6 216 62.5
TPR.G12812 Trifolium pratense HOM05D003980 ORTHO05D005301 7.1e-66 254.6 214 65.0
BraA06t26390Z Brassica rapa HOM05D003980 ORTHO05D005301 9.3e-66 254.2 206 64.1
ClCG06G018320 Citrullus lanatus HOM05D003980 ORTHO05D005301 9.3e-66 254.2 202 69.8
CARHR189830 Cardamine hirsuta HOM05D003980 ORTHO05D005301 2.1e-65 253.1 204 63.2
CiPaw.11G001400 Carya illinoinensis HOM05D003980 ORTHO05D005301 2.1e-65 253.1 214 64.0
FAN13G1995 Fragaria x ananassa HOM05D003980 ORTHO05D005301 2.1e-65 253.1 229 59.8
FAN18G3345 Fragaria x ananassa HOM05D003980 ORTHO05D005301 2.1e-65 253.1 229 59.8
VMungo1309G0598 Vigna mungo HOM05D003980 ORTHO05D005301 2.7e-65 252.7 204 66.7
FAN04G0599 Fragaria x ananassa HOM05D003980 ORTHO05D005301 3.5e-65 252.3 229 60.3
FAN08G3345 Fragaria x ananassa HOM05D003980 ORTHO05D005301 3.5e-65 252.3 229 59.8
CsaV3_1G000110 Cucumis sativus L. HOM05D003980 ORTHO05D005301 6.0e-65 251.5 204 67.6
Ca_17584_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 1.0e-64 250.8 203 66.0
PGR083G0225 Punica granatum HOM05D003980 ORTHO05D005301 1.0e-64 250.8 234 62.4
MELO3C026163.2 Cucumis melo HOM05D003980 ORTHO05D005301 3.0e-64 249.2 204 68.1
DCAR_021407 Daucus carota HOM05D003980 ORTHO05D005301 8.7e-64 247.7 209 62.7
Nn4g22168 Nelumbo nucifera HOM05D003980 ORTHO05D005301 2.5e-63 246.1 206 63.6
arahy.Tifrunner.gnm1.ann1.1NY8SK Arachis hypogaea HOM05D003980 ORTHO05D005301 4.3e-63 245.4 189 68.8
Glyma.08G008600 Glycine max HOM05D003980 ORTHO05D005301 9.6e-63 244.2 183 71.0
TPR.G21586 Trifolium pratense HOM05D003980 ORTHO05D005301 1.3e-62 243.8 184 69.0
AT5G23720 Arabidopsis thaliana HOM05D003980 ORTHO05D005301 1.6e-62 243.4 218 58.7
Glyma.05G201200 Glycine max HOM05D003980 ORTHO05D005301 1.6e-62 243.4 182 71.4
Carub.0006s2147 Capsella rubella HOM05D003980 ORTHO05D005301 3.6e-62 242.3 204 61.3
Medtr3g498735 Medicago truncatula HOM05D003980 ORTHO05D005301 2.4e-61 239.6 192 66.1
Phvul.002G282600 Phaseolus vulgaris HOM05D003980 ORTHO05D005301 2.4e-61 239.6 182 70.3
AL6G34990 Arabidopsis lyrata HOM05D003980 ORTHO05D005301 9.0e-61 237.7 204 60.3
Medtr8g100000 Medicago truncatula HOM05D003980 ORTHO05D005301 1.5e-60 236.9 182 67.6
CSS0000982 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 3.4e-60 235.7 175 69.7
ATR0693G246 Amborella trichopoda HOM05D003980 ORTHO05D005301 4.4e-60 235.3 211 60.2
Lj4g0027174 Lotus japonicus HOM05D003980 ORTHO05D005301 4.4e-60 235.3 182 69.8
arahy.Tifrunner.gnm1.ann1.US1BEE Arachis hypogaea HOM05D003980 ORTHO05D005301 5.8e-60 235.0 206 62.6
Glyma.04G200300 Glycine max HOM05D003980 ORTHO05D005301 5.8e-60 235.0 178 70.8
Nn3g16303 Nelumbo nucifera HOM05D003980 ORTHO05D005301 1.7e-59 233.4 205 64.4
arahy.Tifrunner.gnm1.ann1.JJXJ29 Arachis hypogaea HOM05D003980 ORTHO05D005301 3.8e-59 232.3 188 66.0
Lj1g0007025 Lotus japonicus HOM05D003980 ORTHO05D005301 4.9e-59 231.9 193 65.3
Lalb_Chr12g0202411 Lupinus albus HOM05D003980 ORTHO05D005301 6.4e-59 231.5 189 68.3
AUR62034771 Chenopodium quinoa HOM05D003980 ORTHO05D005301 5.4e-58 228.4 175 68.6
Phvul.009G164700 Phaseolus vulgaris HOM05D003980 ORTHO05D005301 5.4e-58 228.4 179 67.6
Eucgr.B00073 Eucalyptus grandis HOM05D003980 ORTHO05D005301 7.1e-58 228.0 174 67.8
Lj5A88T63 Lonicera japonica HOM05D003980 ORTHO05D005301 1.6e-57 226.9 196 64.3
PSO832G3889 Papaver somniferum HOM05D003980 ORTHO05D005301 1.0e-56 224.2 191 65.4
PSO591G0475 Papaver somniferum HOM05D003980 ORTHO05D005301 1.3e-56 223.8 191 65.4
VMungo0251G0815 Vigna mungo HOM05D003980 ORTHO05D005301 1.7e-56 223.4 202 61.9
Sabra15G0125200 Salix brachista HOM05D003980 ORTHO05D005301 1.9e-55 219.9 174 69.5
Aqoxy5G03175 Aquilegia oxysepala HOM05D003980 ORTHO05D005301 3.3e-55 219.2 208 59.1
Ca_10885_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 3.6e-54 215.7 183 64.5
Psat5g054480 Pisum sativum HOM05D003980 ORTHO05D005301 1.8e-53 213.4 200 58.5
Lalb_Chr13g0297021 Lupinus albus HOM05D003980 ORTHO05D005301 9.0e-53 211.1 208 57.2
Ca_16085_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 1.2e-52 210.7 174 64.9
AUR62009517 Chenopodium quinoa HOM05D003980 ORTHO05D005301 2.0e-52 209.9 205 57.1
Lalb_Chr23g0272921 Lupinus albus HOM05D003980 ORTHO05D005301 1.3e-48 197.2 175 61.7
Zm00001eb130450 Zea mays HOM05D003980 ORTHO05D005301 1.3e-46 190.7 203 57.1
CDE01G0794 Ceratophyllum demersum HOM05D003980 ORTHO05D005301 1.1e-45 187.6 226 50.0
CSS0008437 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 4.0e-45 185.7 113 85.0
SEGI_36335 Sequoiadendron giganteum HOM05D003980 ORTHO05D005301 4.5e-44 182.2 210 53.3
MBI19_g26308_MAGBIO Magnolia biondii HOM05D003980 ORTHO05D005301 3.8e-43 179.1 256 44.5
Os01g0311500 Oryza sativa ssp. japonica HOM05D003980 ORTHO05D005301 3.8e-43 179.1 205 55.1
HPP92_006911 Vanilla planifolia HOM05D003980 ORTHO05D005301 5.5e-42 175.3 228 46.1
Actinidia18313 Actinidia chinensis HOM05D003980 ORTHO05D005301 2.1e-41 173.3 107 85.0
Cpa.g.sc4.108 Carica papaya HOM05D003980 ORTHO05D005301 1.3e-40 170.6 204 49.5
Dinv23210 Davidia involucrata HOM05D003980 ORTHO05D005301 3.3e-39 166.0 97 86.6
Ca_14153_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 1.4e-37 160.6 114 71.9
Sed0025035 Sechium edule HOM05D003980 ORTHO05D005301 4.1e-37 159.1 225 50.7
Zm00001eb340730 Zea mays HOM05D003980 ORTHO05D005301 1.1e-34 151.0 163 50.9
Os01g0347000 Oryza sativa ssp. japonica HOM05D003980 ORTHO05D005301 2.1e-33 146.7 170 50.6
Psat5g054520 Pisum sativum HOM05D003980 ORTHO05D005301 6.1e-33 145.2 160 51.9
Actinidia25530 Actinidia chinensis HOM05D003980 ORTHO05D005301 9.7e-31 137.9 84 85.7
CDE05G3337 Ceratophyllum demersum HOM05D003980 ORTHO05D005301 6.5e-27 125.2 97 68.0
Mapoly0024s0055 Marchantia polymorpha HOM05D003980 ORTHO05D005301 1.8e-21 107.1 177 42.9
CSS0032153 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 7.7e-20 101.7 61 82.0
Pp3c9_1160 Physcomitrium patens HOM05D003980 ORTHO05D005301 1.3e-19 100.9 183 39.9
Pp3c9_1168 Physcomitrium patens HOM05D003980 ORTHO05D005301 1.3e-19 100.9 183 39.9
SMO116G0359 Selaginella moellendorffii HOM05D003980 ORTHO05D005301 5.0e-19 99.0 115 50.4
SHI14120 Sapria himalayana HOM05D003980 ORTHO05D005301 1.8e-16 90.5 61 80.3
SHI14119 Sapria himalayana HOM05D003980 ORTHO05D005301 5.3e-13 79.0 75 57.3
VMungo0540G0604 Vigna mungo HOM05D003980 ORTHO05D019435 9.1e-13 78.2 72 54.2
CSS0005263 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D019435 1.1e-10 71.2 46 67.4
CSS0039620 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D019435 1.2e-09 67.8 46 65.2
SHI14117 Sapria himalayana HOM05D003980 ORTHO05D019435 2.7e-09 66.6 59 52.5
CDE05G1848 Ceratophyllum demersum HOM05D003980 ORTHO05D019435 3.6e-09 66.2 92 41.3
Actinidia25531 Actinidia chinensis HOM05D003980 ORTHO05D019435 1.0e-08 64.7 55 56.4


User provided reference genes

Program Settings