Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold143G35734 Striga asiatica HOM05D005730 ORTHO05D007038 2.6e-55 218.4 102 100.0
Cc00_g00480 Coffea canephora HOM05D005730 ORTHO05D007038 1.4e-32 142.9 70 90.0
CiPaw.16G103100 Carya illinoinensis HOM05D005730 ORTHO05D007038 3.0e-32 141.7 70 91.4
Os01g0732100 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 1.2e-31 139.8 72 86.1
Sc09g0007480 Simmondsia chinensis HOM05D005730 ORTHO05D007038 1.2e-31 139.8 70 88.6
THA.LOC104815318 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 1.2e-31 139.8 70 90.0
THA.LOC109116496 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 1.2e-31 139.8 70 90.0
THA.LOC109117265 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 1.2e-31 139.8 70 90.0
Zm00001eb368480 Zea mays HOM05D005730 ORTHO05D007038 1.2e-31 139.8 70 87.1
Gohir.A03G029700 Gossypium hirsutum HOM05D005730 ORTHO05D007038 2.6e-31 138.7 70 90.0
Lj2g0002952 Lotus japonicus HOM05D005730 ORTHO05D007038 2.6e-31 138.7 70 88.6
Os01g0750800 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 2.6e-31 138.7 70 85.7
Phvul.010G060700 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 2.6e-31 138.7 70 88.6
Thecc.06G194900 Theobroma cacao HOM05D005730 ORTHO05D007038 2.6e-31 138.7 70 88.6
Duzib170G0040 Durio zibethinus HOM05D005730 ORTHO05D007038 4.4e-31 137.9 70 85.7
PGR142G0999 Punica granatum HOM05D005730 ORTHO05D007038 4.4e-31 137.9 70 88.6
CSS0014288 Camellia sinensis var. sinensis HOM05D005730 ORTHO05D007038 5.7e-31 137.5 70 85.7
CsaV3_1G004610 Cucumis sativus L. HOM05D005730 ORTHO05D007038 5.7e-31 137.5 71 85.9
Duzib177G0654 Durio zibethinus HOM05D005730 ORTHO05D007038 5.7e-31 137.5 70 87.1
Migut.L00209 Erythranthe guttata HOM05D005730 ORTHO05D007038 9.8e-31 136.7 71 83.1
Cfa020734 Carpinus fangiana HOM05D005730 ORTHO05D007038 1.3e-30 136.3 70 88.6
FvH4_4g06270 Fragaria vesca HOM05D005730 ORTHO05D007038 1.3e-30 136.3 70 84.3
FAN12G2290 Fragaria x ananassa HOM05D005730 ORTHO05D007038 1.3e-30 136.3 70 84.3
Prupe.1G065800 Prunus persica HOM05D005730 ORTHO05D007038 1.3e-30 136.3 70 85.7
RcHm_v2.0_Chr4g0397991 Rosa chinensis HOM05D005730 ORTHO05D007038 1.3e-30 136.3 70 84.3
Ciclev10010105m.g Citrus clementina HOM05D005730 ORTHO05D007038 1.7e-30 136.0 70 85.7
Glyma.07G130200 Glycine max HOM05D005730 ORTHO05D007038 1.7e-30 136.0 70 85.7
VMungo0464G0384 Vigna mungo HOM05D002151 ORTHO05D002142 1.7e-30 136.0 70 85.7
Atru.chr10.916 Acer truncatum HOM05D005730 ORTHO05D007038 2.2e-30 135.6 70 84.3
Atru.chr10.931 Acer truncatum HOM05D005730 ORTHO05D007038 2.2e-30 135.6 70 84.3
Gohir.D03G138800 Gossypium hirsutum HOM05D005730 ORTHO05D007038 2.2e-30 135.6 70 87.1
Gorai.003G145600 Gossypium raimondii HOM05D005730 ORTHO05D007038 2.2e-30 135.6 70 87.1
Migut.J00829 Erythranthe guttata HOM05D005730 ORTHO05D007038 3.7e-30 134.8 71 81.7
MD13G1234900 Malus domestica HOM05D005730 ORTHO05D007038 3.7e-30 134.8 70 84.3
MD16G1239700 Malus domestica HOM05D005730 ORTHO05D007038 3.7e-30 134.8 70 84.3
Manes.04G088600 Manihot esculenta HOM05D005730 ORTHO05D007038 3.7e-30 134.8 70 84.3
Nn2g12785 Nelumbo nucifera HOM05D005730 ORTHO05D007038 3.7e-30 134.8 70 84.3
Phvul.004G177400 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 3.7e-30 134.8 70 85.7
TAR383G0493 Trochodendron aralioides HOM05D005730 ORTHO05D007038 6.3e-30 134.0 70 84.3
Actinidia38519 Actinidia chinensis HOM05D005730 ORTHO05D007038 8.3e-30 133.7 70 80.0
CDE06G0649 Ceratophyllum demersum HOM05D005730 ORTHO05D007038 1.1e-29 133.3 75 78.7
Dinv06659 Davidia involucrata HOM05D005730 ORTHO05D007038 1.1e-29 133.3 70 82.9
Sed0021240 Sechium edule HOM05D005730 ORTHO05D007038 1.1e-29 133.3 70 85.7
MELO3C017388.2 Cucumis melo HOM05D005730 ORTHO05D007038 1.4e-29 132.9 71 83.1
QL11p009271 Quercus lobata HOM05D005730 ORTHO05D007038 2.4e-29 132.1 70 85.7
Manes.11G087000 Manihot esculenta HOM05D005730 ORTHO05D007038 3.1e-29 131.7 70 81.4
Aqoxy7G02690 Aquilegia oxysepala HOM05D005730 ORTHO05D007038 4.1e-29 131.3 70 80.0
Psat1g051120 Pisum sativum HOM05D005730 ORTHO05D007038 4.1e-29 131.3 70 84.3
Thhalv10017500m.g Eutrema salsugineum HOM05D005730 ORTHO05D007038 5.4e-29 131.0 70 80.0
Sp4g13950 Schrenkiella parvula HOM05D005730 ORTHO05D007038 5.4e-29 131.0 70 80.0
TPR.G21357 Trifolium pratense HOM05D005730 ORTHO05D007038 7.0e-29 130.6 70 82.9
Aa31LG5G7440 Aethionema arabicum HOM05D005730 ORTHO05D007038 9.1e-29 130.2 70 77.1
AL4G26750 Arabidopsis lyrata HOM05D005730 ORTHO05D007038 9.1e-29 130.2 70 78.6
AT2G31490 Arabidopsis thaliana HOM05D005730 ORTHO05D007038 9.1e-29 130.2 70 78.6
arahy.Tifrunner.gnm1.ann1.8U1ME7 Arachis hypogaea HOM05D005730 ORTHO05D007038 9.1e-29 130.2 70 81.4
BcaC02g07993 Brassica carinata HOM05D005730 ORTHO05D007038 9.1e-29 130.2 70 78.6
A03p17640 Brassica napus HOM05D005730 ORTHO05D007038 9.1e-29 130.2 70 78.6
A04p24230 Brassica napus HOM05D005730 ORTHO05D007038 9.1e-29 130.2 70 78.6
C03p20730 Brassica napus HOM05D005730 ORTHO05D007038 9.1e-29 130.2 70 78.6
BolC3t14450H Brassica oleracea HOM05D005730 ORTHO05D007038 9.1e-29 130.2 70 78.6
BolC4t23397H Brassica oleracea HOM05D005730 ORTHO05D007038 9.1e-29 130.2 70 78.6
BolC4t27587H Brassica oleracea HOM05D005730 ORTHO05D007038 9.1e-29 130.2 70 78.6
BraA03t11029Z Brassica rapa HOM05D005730 ORTHO05D007038 9.1e-29 130.2 70 78.6
Carub.0004s1281 Capsella rubella HOM05D005730 ORTHO05D007038 9.1e-29 130.2 70 78.6
CARHR125130 Cardamine hirsuta HOM05D005730 ORTHO05D007038 9.1e-29 130.2 70 78.6
ClCG06G014030 Citrullus lanatus HOM05D005730 ORTHO05D007038 1.2e-28 129.8 69 81.2
Potri.006G077400 Populus trichocarpa HOM05D005730 ORTHO05D007038 1.2e-28 129.8 70 80.0
GSVIVG01029731001 Vitis vinifera HOM05D005730 ORTHO05D007038 1.6e-28 129.4 70 80.0
Ah.10g033660 Amaranthus hybridus HOM05D005730 ORTHO05D007038 2.0e-28 129.0 70 75.7
arahy.Tifrunner.gnm1.ann1.YLZA1F Arachis hypogaea HOM05D005730 ORTHO05D007038 2.7e-28 128.6 70 80.0
Eucgr.D02622 Eucalyptus grandis HOM05D005730 ORTHO05D007038 2.7e-28 128.6 70 81.4
Sopen05g027690 Solanum pennellii HOM05D005730 ORTHO05D007038 3.5e-28 128.3 70 78.6
RcHm_v2.0_Chr6g0293611 Rosa chinensis HOM05D005730 ORTHO05D007038 4.5e-28 127.9 70 77.1
Lsat_1_v5_gn_7_59680 Lactuca sativa HOM05D005730 ORTHO05D007038 5.9e-28 127.5 70 81.4
unitig_26.g9132 Utricularia gibba HOM05D005730 ORTHO05D007038 5.9e-28 127.5 71 77.5
CANSAT01G0847 Cannabis sativa HOM05D005730 ORTHO05D007038 7.7e-28 127.1 70 75.7
Lalb_Chr14g0361711 Lupinus albus HOM05D005730 ORTHO05D007038 7.7e-28 127.1 70 81.4
Zm00001eb370910 Zea mays HOM05D005730 ORTHO05D007038 7.7e-28 127.1 70 82.9
HanXRQChr03g0064531 Helianthus annuus HOM05D005730 ORTHO05D007038 1.7e-27 125.9 70 78.6
HanXRQChr09g0243241 Helianthus annuus HOM05D005730 ORTHO05D007038 1.7e-27 125.9 70 78.6
ECA240G4690 Erigeron canadensis HOM05D005730 ORTHO05D007038 6.5e-27 124.0 70 78.6
Nitab4.5_0004188g0020 Nicotiana tabacum HOM05D005730 ORTHO05D007038 6.5e-27 124.0 70 75.7
BcaB01g04043 Brassica carinata HOM05D005730 ORTHO05D007038 2.5e-26 122.1 66 78.8
BcaB02g10394 Brassica carinata HOM05D005730 ORTHO05D007038 2.5e-26 122.1 66 78.8
BcaB06g28537 Brassica carinata HOM05D005730 ORTHO05D007038 4.2e-26 121.3 66 77.3
PSO063G5181 Papaver somniferum HOM05D005730 ORTHO05D007038 1.2e-25 119.8 72 70.8
PSO170G3580 Papaver somniferum HOM05D005730 ORTHO05D007038 1.6e-25 119.4 72 70.8
FAN22G1024 Fragaria x ananassa HOM05D005730 ORTHO05D007038 2.8e-25 118.6 105 56.2
FAN07G1689 Fragaria x ananassa HOM05D005730 ORTHO05D007038 3.6e-25 118.2 105 55.2
HPP92_021358 Vanilla planifolia HOM05D005730 ORTHO05D007038 8.0e-25 117.1 78 70.5
RcHm_v2.0_Chr6g0293601 Rosa chinensis HOM05D005730 ORTHO05D007038 1.4e-24 116.3 66 77.3
TWI63G0907 Tripterygium wilfordii HOM05D005730 ORTHO05D007038 2.3e-24 115.5 70 70.0
Nitab4.5_0005014g0020 Nicotiana tabacum HOM05D001912 ORTHO05D001975 2.6e-23 112.1 70 75.7
Peaxi162Scf00320g00055 Petunia axillaris HOM05D005730 ORTHO05D007038 2.6e-23 112.1 61 80.3
Peaxi162Scf00204g00039 Petunia axillaris HOM05D005730 ORTHO05D007038 3.4e-23 111.7 73 67.1
Solyc05g046390.3 Solanum lycopersicum HOM05D005730 ORTHO05D007038 1.3e-22 109.8 56 85.7
DCAR_019791 Daucus carota HOM05D005730 ORTHO05D007038 2.2e-22 109.0 56 87.5
SHI37948 Sapria himalayana HOM05D005730 ORTHO05D007038 2.2e-22 109.0 66 74.2
PGSC0003DMG400013688 Solanum tuberosum HOM05D000482 ORTHO05D000349 2.2e-22 109.0 56 85.7
Nitab4.5_0000413g0090 Nicotiana tabacum HOM05D005730 ORTHO05D007038 3.7e-22 108.2 56 85.7
Sabra06G0058600 Salix brachista HOM05D005730 ORTHO05D007038 1.8e-21 105.9 113 48.7
vmacro20778 Vaccinium macrocarpon HOM05D005730 ORTHO05D007038 1.8e-21 105.9 68 69.1
COL.COLO4_33448 Corchorus olitorius HOM05D005730 ORTHO05D007038 2.4e-21 105.5 56 85.7
FAN17G0140 Fragaria x ananassa HOM05D005730 ORTHO05D007038 3.1e-21 105.1 63 73.0
AUR62020709 Chenopodium quinoa HOM05D005730 ORTHO05D007038 4.1e-21 104.8 63 76.2
FAN17G1913 Fragaria x ananassa HOM05D005730 ORTHO05D007038 5.4e-21 104.4 57 78.9
Ca_25629_v3 Cicer arietinum L. HOM05D005730 ORTHO05D007038 7.0e-21 104.0 57 78.9
TAR626G1073 Trochodendron aralioides HOM05D005730 ORTHO05D007038 7.0e-21 104.0 56 82.1
Cpa.g.sc115.33 Carica papaya HOM05D005730 ORTHO05D007038 9.2e-21 103.6 59 74.6
Peaxi162Scf00906g00224 Petunia axillaris HOM05D005730 ORTHO05D007038 1.2e-20 103.2 56 80.4
ATR0568G059 Amborella trichopoda HOM05D005730 ORTHO05D007038 1.6e-20 102.8 56 83.9
Hund03236 Selenicereus undatus HOM05D005730 ORTHO05D007038 1.6e-20 102.8 56 80.4
AUR62028015 Chenopodium quinoa HOM05D005730 ORTHO05D007038 2.7e-20 102.1 56 82.1
FAN11G1086 Fragaria x ananassa HOM05D005730 ORTHO05D007038 1.0e-19 100.1 56 78.6
EL10Ac2g03641 Beta vulgaris HOM05D005730 ORTHO05D007038 1.3e-19 99.8 56 76.8
BraA05t20340Z Brassica rapa HOM05D000059 ORTHO05D000528 1.3e-19 99.8 56 75.0
BcaC02g11258 Brassica carinata HOM05D005730 ORTHO05D007038 1.7e-19 99.4 56 75.0
C04p60960 Brassica napus HOM05D005730 ORTHO05D007038 1.7e-19 99.4 56 75.0
BraA04t17942Z Brassica rapa HOM05D000059 ORTHO05D000528 1.7e-19 99.4 56 75.0
Migut.L00210 Erythranthe guttata HOM05D005730 ORTHO05D007038 2.3e-19 99.0 55 80.0
A05p14120 Brassica napus HOM05D005730 ORTHO05D007038 2.9e-19 98.6 56 75.0
Medtr6g093010 Medicago truncatula HOM05D005730 ORTHO05D007038 8.6e-19 97.1 56 76.8
SalBow6G6230 Salvia bowleyana HOM05D005730 ORTHO05D007038 3.3e-18 95.1 52 80.8
Pp3c25_300 Physcomitrium patens HOM05D005730 ORTHO05D007038 4.3e-18 94.7 70 62.9
Solyc09g059220.1 Solanum lycopersicum HOM05D005730 ORTHO05D007038 7.3e-18 94.0 72 56.9
Hma1.2p1_0314F.1_g121950 Hydrangea macrophylla HOM05D005730 ORTHO05D007038 4.7e-17 91.3 52 75.0
SEGI_08291 Sequoiadendron giganteum HOM05D005730 ORTHO05D007038 6.1e-17 90.9 56 73.2
HanXRQChr13g0388231 Helianthus annuus HOM05D005730 ORTHO05D007038 1.8e-16 89.4 56 71.4
FAN28G2060 Fragaria x ananassa HOM05D002523 ORTHO05D002951 3.0e-16 88.6 49 77.6
Pp3c16_220 Physcomitrium patens HOM05D005730 ORTHO05D007038 5.2e-16 87.8 70 57.1
Migut.K01179 Erythranthe guttata HOM05D005730 ORTHO05D007038 9.8e-15 83.6 55 69.1
Mapoly0005s0214 Marchantia polymorpha HOM05D005730 ORTHO05D007038 9.8e-15 83.6 70 51.4
Lj5A722T6 Lonicera japonica HOM05D005730 ORTHO05D007038 2.2e-14 82.4 44 79.5
CDE02G1938 Ceratophyllum demersum HOM05D005730 ORTHO05D007038 8.3e-14 80.5 40 87.5
MELO3C019212.2 Cucumis melo HOM05D005730 ORTHO05D007038 7.0e-13 77.4 56 67.9
CBR_g40455 Chara braunii HOM05D005730 ORTHO05D007038 1.7e-11 72.8 66 48.5
SHI03111 Sapria himalayana HOM05D005730 ORTHO05D007038 3.9e-11 71.6 65 58.5
MCO07G159 Micromonas commoda HOM05D005730 ORTHO05D007038 8.6e-11 70.5 65 49.2
SMO141G0046 Selaginella moellendorffii HOM05D005730 ORTHO05D007038 1.1e-10 70.1 70 48.6
Mapoly0005s0215 Marchantia polymorpha HOM05D005730 ORTHO05D007038 4.3e-10 68.2 56 50.0
Medtr8g107150 Medicago truncatula HOM05D005730 ORTHO05D007038 7.5e-07 57.4 32 81.2


User provided reference genes

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