Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold143G35713 Striga asiatica HOM05D007286 ORTHO05D008955 6.4e-266 920.2 483 100.0
MSTRG.20479 Avicennia marina HOM05D007286 ORTHO05D008955 2.2e-120 436.8 519 52.8
Migut.B01162 Erythranthe guttata HOM05D007286 ORTHO05D008955 2.8e-104 383.3 510 51.4
SalBow8G2801 Salvia bowleyana HOM05D007286 ORTHO05D008955 8.9e-90 335.1 375 56.5
Oeu013048.2 Olea europaea HOM05D007286 ORTHO05D008955 2.3e-85 320.5 557 43.3
PGSC0003DMG401027501 Solanum tuberosum HOM05D007286 ORTHO05D008955 2.8e-75 287.0 571 40.3
Sopen01g040600 Solanum pennellii HOM05D007286 ORTHO05D008955 6.2e-75 285.8 572 40.6
Solyc01g096890.4 Solanum lycopersicum HOM05D007286 ORTHO05D008955 6.8e-74 282.3 568 40.1
Peaxi162Scf00647g00320 Petunia axillaris HOM05D007286 ORTHO05D008955 1.4e-71 274.6 562 39.7
CAN.G134.51 Capsicum annuum HOM05D007286 ORTHO05D008955 3.2e-71 273.5 572 38.8
Nitab4.5_0001611g0060 Nicotiana tabacum HOM05D007286 ORTHO05D008955 1.2e-70 271.6 587 38.0
Nitab4.5_0005056g0090 Nicotiana tabacum HOM05D007286 ORTHO05D008955 1.3e-64 251.5 610 36.1
Hma1.2p1_0233F.1_g097980 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 8.3e-64 248.8 588 37.8
CSS0007228 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 4.6e-62 243.0 566 39.2
CSS0046865 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D008955 4.6e-62 243.0 566 39.2
Rhsim07G0072400 Rhododendron simsii HOM05D007286 ORTHO05D008955 4.3e-60 236.5 575 38.4
Nn7g37274 Nelumbo nucifera HOM05D007286 ORTHO05D008955 1.8e-58 231.1 594 35.7
TAR555G0002 Trochodendron aralioides HOM05D007286 ORTHO05D008955 8.9e-58 228.8 597 36.2
GSVIVG01027344001 Vitis vinifera HOM05D007286 ORTHO05D008955 3.8e-56 223.4 602 34.9
COL.COLO4_28923 Corchorus olitorius HOM05D007286 ORTHO05D008955 1.2e-54 218.4 583 34.0
Dinv20486 Davidia involucrata HOM05D007286 ORTHO05D008955 1.3e-53 214.9 373 42.1
CiPaw.13G047300 Carya illinoinensis HOM05D007286 ORTHO05D008955 2.3e-53 214.2 566 35.7
Lsat_1_v5_gn_5_41960 Lactuca sativa HOM05D007286 ORTHO05D008955 5.1e-53 213.0 573 34.2
Prupe.2G060300 Prunus persica HOM05D007286 ORTHO05D008955 5.1e-53 213.0 556 36.0
TWI38G1128 Tripterygium wilfordii HOM05D007286 ORTHO05D008955 5.1e-53 213.0 586 33.8
Manes.10G063001 Manihot esculenta HOM05D000188 ORTHO05D000362 8.7e-53 212.2 583 34.6
QL04p050581 Quercus lobata HOM05D007286 ORTHO05D008955 1.1e-52 211.8 603 34.2
HanXRQChr07g0192711 Helianthus annuus HOM05D007286 ORTHO05D008955 7.3e-52 209.1 539 36.0
MBI19_g06405_MAGBIO Magnolia biondii HOM05D007286 ORTHO05D008955 1.3e-51 208.4 587 35.3
Actinidia12136 Actinidia chinensis HOM05D007286 ORTHO05D008955 3.6e-51 206.8 581 35.8
MD02G1265200 Malus domestica HOM05D007286 ORTHO05D008955 6.2e-51 206.1 570 33.9
Eucgr.G02637 Eucalyptus grandis HOM05D007286 ORTHO05D008955 3.1e-50 203.8 571 33.5
Gohir.A05G285500 Gossypium hirsutum HOM05D007286 ORTHO05D008955 1.2e-49 201.8 586 33.8
arahy.Tifrunner.gnm1.ann1.5NH7JH Arachis hypogaea HOM05D007286 ORTHO05D008955 3.4e-49 200.3 549 35.7
Gohir.D05G286600 Gossypium hirsutum HOM05D007286 ORTHO05D008955 4.4e-49 199.9 589 32.8
Gorai.009G301600 Gossypium raimondii HOM05D007286 ORTHO05D008955 7.6e-49 199.1 589 32.8
Potri.008G012000 Populus trichocarpa HOM05D007286 ORTHO05D008955 2.2e-48 197.6 607 33.1
Thecc.10G130100 Theobroma cacao HOM05D007286 ORTHO05D008955 2.9e-48 197.2 591 33.0
PGR142G0126 Punica granatum HOM05D007286 ORTHO05D008955 4.2e-47 193.4 590 32.9
Potri.010G247100 Populus trichocarpa HOM05D007286 ORTHO05D008955 9.3e-47 192.2 613 32.3
CANSAT56G4194 Cannabis sativa HOM05D007286 ORTHO05D008955 1.6e-46 191.4 579 33.7
Ciclev10000662m.g Citrus clementina HOM05D007286 ORTHO05D008955 2.7e-46 190.7 576 34.5
CANSAT56G1680 Cannabis sativa HOM05D007286 ORTHO05D008955 4.6e-46 189.9 570 33.5
arahy.Tifrunner.gnm1.ann1.VD1ICN Arachis hypogaea HOM05D007286 ORTHO05D008955 7.8e-46 189.1 584 33.6
Sabra10G0192500 Salix brachista HOM05D007286 ORTHO05D008955 2.3e-45 187.6 614 33.1
Duzib128G1558 Durio zibethinus HOM05D000138 ORTHO05D008955 3.0e-45 187.2 523 35.4
Glyma.08G227900 Glycine max HOM05D007286 ORTHO05D008955 3.9e-45 186.8 558 34.8
Cfa010442 Carpinus fangiana HOM05D007286 ORTHO05D008955 6.6e-45 186.0 565 32.7
Sed0010854 Sechium edule HOM05D007286 ORTHO05D008955 7.3e-44 182.6 559 32.9
Atru.chr12.1143 Acer truncatum HOM05D007286 ORTHO05D008955 1.3e-43 181.8 547 34.4
RcHm_v2.0_Chr1g0331161 Rosa chinensis HOM05D007286 ORTHO05D008955 4.8e-43 179.9 623 32.3
EL10Ac4g08793 Beta vulgaris HOM05D007286 ORTHO05D008955 8.1e-43 179.1 528 33.7
FAN06G0358 Fragaria x ananassa HOM05D007286 ORTHO05D008955 1.8e-42 177.9 614 31.6
Phvul.011G187500 Phaseolus vulgaris HOM05D007286 ORTHO05D008955 2.4e-42 177.6 547 34.6
Sabra08G0007300 Salix brachista HOM05D007286 ORTHO05D008955 4.0e-42 176.8 619 31.0
FvH4_7g04960 Fragaria vesca HOM05D007286 ORTHO05D008955 5.3e-42 176.4 614 31.6
AUR62034104 Chenopodium quinoa HOM05D007286 ORTHO05D008955 1.5e-41 174.9 539 35.1
ECA246G2791 Erigeron canadensis HOM05D000076 ORTHO05D002730 9.9e-41 172.2 551 31.6
FAN03G1022 Fragaria x ananassa HOM05D007286 ORTHO05D008955 9.9e-41 172.2 578 30.8
FAN10G3167 Fragaria x ananassa HOM05D007286 ORTHO05D008955 2.9e-40 170.6 578 31.1
Lalb_Chr19g0132561 Lupinus albus HOM05D007286 ORTHO05D008955 2.9e-40 170.6 552 34.1
Medtr8g044120 Medicago truncatula HOM05D007286 ORTHO05D008955 1.1e-39 168.7 508 32.3
VMungo1127G2168 Vigna mungo HOM05D007286 ORTHO05D008955 2.4e-39 167.5 269 42.8
AUR62041274 Chenopodium quinoa HOM05D007286 ORTHO05D008955 4.2e-39 166.8 567 33.5
Psat4g141960 Pisum sativum HOM05D007286 ORTHO05D008955 5.4e-39 166.4 545 32.3
Aqoxy1G00088 Aquilegia oxysepala HOM05D007286 ORTHO05D008955 9.3e-39 165.6 556 33.1
ClCG05G022150 Citrullus lanatus HOM05D007286 ORTHO05D008955 1.6e-38 164.9 565 32.9
TPR.G36317 Trifolium pratense HOM05D007286 ORTHO05D008955 2.1e-38 164.5 261 42.5
Cc07_g21350 Coffea canephora HOM05D007286 ORTHO05D008955 2.7e-38 164.1 261 42.9
MELO3C012308.2 Cucumis melo HOM05D007286 ORTHO05D008955 1.8e-37 161.4 568 32.2
Sc09g0004920 Simmondsia chinensis HOM05D007286 ORTHO05D008955 1.8e-37 161.4 577 30.7
Lj3g0009162 Lotus japonicus HOM05D007286 ORTHO05D008955 2.3e-37 161.0 491 35.6
Hund06829 Selenicereus undatus HOM05D007286 ORTHO05D008955 1.3e-35 155.2 535 33.5
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 1.4e-34 151.8 499 32.1
PSO339G4644 Papaver somniferum HOM05D007286 ORTHO05D008955 2.4e-34 151.0 547 32.2
vmacro23447 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 6.5e-32 142.9 369 37.7
vmacro13789 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 1.1e-31 142.1 369 37.7
Ca_12172_v3 Cicer arietinum L. HOM05D007286 ORTHO05D008955 1.9e-31 141.4 406 35.2
Haze_03401 Corylus avellana HOM05D007286 ORTHO05D008955 5.5e-31 139.8 479 32.2
CsaV3_5G034980 Cucumis sativus L. HOM05D007286 ORTHO05D008955 5.5e-31 139.8 560 31.1
ATR0307G001 Amborella trichopoda HOM05D007286 ORTHO05D008955 7.1e-31 139.4 598 30.9
CDE04G1177 Ceratophyllum demersum HOM05D007286 ORTHO05D008955 2.1e-30 137.9 526 31.7
Cpa.g.sc54.34 Carica papaya HOM05D007286 ORTHO05D008955 5.7e-28 129.8 144 52.1
HPP92_018000 Vanilla planifolia HOM05D007286 ORTHO05D008955 1.3e-27 128.6 558 30.3
Hma1.2p1_2056F.1_g312790 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 1.7e-24 118.2 92 68.5
Cc07_g21330 Coffea canephora HOM05D007286 ORTHO05D008955 9.3e-23 112.5 289 37.4
DCAR_025313 Daucus carota HOM05D007286 ORTHO05D008955 2.7e-22 110.9 407 32.9
SalBow8G3990 Salvia bowleyana HOM05D007286 ORTHO05D008955 1.5e-20 105.1 109 53.2
unitig_22.g5338 Utricularia gibba HOM05D007286 ORTHO05D008955 1.9e-20 104.8 267 35.6
vmacro13790 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 2.0e-17 94.7 207 35.7
vmacro23446 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 2.0e-17 94.7 207 35.7
Glyma.15G221551 Glycine max HOM05D007286 ORTHO05D008955 1.1e-15 89.0 174 39.1
Hma1.2p1_0892F.1_g233190 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 1.1e-15 89.0 89 55.1
Zm00001eb093550 Zea mays HOM05D007286 ORTHO05D008955 4.2e-15 87.0 606 25.4
Ciclev10019441m.g Citrus clementina HOM05D005518 ORTHO05D001269 1.0e-13 82.4 267 29.6
PSO782G5170 Papaver somniferum HOM05D005518 ORTHO05D001269 6.7e-13 79.7 273 26.4
Atru.chr9.1022 Acer truncatum HOM05D005518 ORTHO05D001269 1.1e-12 79.0 272 27.6
Os11g0129800 Oryza sativa ssp. japonica HOM05D007286 ORTHO05D008955 2.0e-12 78.2 530 27.0
Cpa.g.sc4.97 Carica papaya HOM05D005518 ORTHO05D001269 4.3e-12 77.0 91 41.8
Gohir.A09G245800 Gossypium hirsutum HOM05D005518 ORTHO05D001269 9.7e-12 75.9 108 37.0
ATR0751G048 Amborella trichopoda HOM05D005518 ORTHO05D001269 1.3e-11 75.5 282 29.4
Duzib084G0018 Durio zibethinus HOM05D005518 ORTHO05D001269 2.2e-11 74.7 113 39.8
PSO384G4662 Papaver somniferum HOM05D007286 ORTHO05D008955 3.7e-11 73.9 196 32.1
Dinv11102 Davidia involucrata HOM05D005518 ORTHO05D001269 8.2e-11 72.8 283 26.5
SEGI_11479 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 8.2e-11 72.8 141 35.5
PGR044G0025 Punica granatum HOM05D005518 ORTHO05D001269 1.1e-10 72.4 263 28.1
Aqoxy4G02270 Aquilegia oxysepala HOM05D005518 ORTHO05D001269 1.8e-10 71.6 104 44.2
HPP92_026687 Vanilla planifolia HOM05D007286 ORTHO05D008955 2.4e-10 71.2 180 34.4
Zm00001eb388520 Zea mays HOM05D005518 ORTHO05D001269 4.1e-10 70.5 306 28.1
Nn1g07622 Nelumbo nucifera HOM05D005518 ORTHO05D001269 6.9e-10 69.7 161 30.4
MBI14_g12740_MAGBIO Magnolia biondii HOM05D005518 ORTHO05D001269 9.1e-10 69.3 105 37.1
CiPaw.11G011000 Carya illinoinensis HOM05D005518 ORTHO05D001269 1.5e-09 68.6 92 38.0
SEGI_40207 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 1.5e-09 68.6 420 28.3
AUR62025869 Chenopodium quinoa HOM05D005518 ORTHO05D001269 2.0e-09 68.2 146 34.2
Manes.06G116500 Manihot esculenta HOM05D005518 ORTHO05D001269 2.0e-09 68.2 139 33.8
TWI23G0187 Tripterygium wilfordii HOM05D005518 ORTHO05D001269 3.4e-09 67.4 318 27.7
THA.LOC104803143 Tarenaya hassleriana HOM05D005518 ORTHO05D001269 4.5e-09 67.0 99 37.4
Aqoxy386s002 Aquilegia oxysepala HOM05D007286 ORTHO05D008955 5.9e-09 66.6 193 32.6
arahy.Tifrunner.gnm1.ann1.P5I184 Arachis hypogaea HOM05D001134 ORTHO05D001269 5.9e-09 66.6 99 37.4
Hma1.2p1_0717F.1_g208260 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 5.9e-09 66.6 114 41.2
Potri.015G091500 Populus trichocarpa HOM05D005518 ORTHO05D001269 1.0e-08 65.9 308 26.6
THA.LOC104825006 Tarenaya hassleriana HOM05D005518 ORTHO05D001269 1.0e-08 65.9 99 36.4
HPP92_026688 Vanilla planifolia HOM05D007286 ORTHO05D008955 1.3e-08 65.5 369 28.5
CDE06G2288 Ceratophyllum demersum HOM05D005518 ORTHO05D005913 2.2e-08 64.7 95 42.1
Aa31LG3G5820 Aethionema arabicum HOM05D005518 ORTHO05D001269 6.5e-08 63.2 89 42.7
FAN08G0706 Fragaria x ananassa HOM05D005518 ORTHO05D001269 6.5e-08 63.2 115 36.5
RcHm_v2.0_Chr7g0190821 Rosa chinensis HOM05D005518 ORTHO05D001269 6.5e-08 63.2 115 36.5
Sp6g12480 Schrenkiella parvula HOM05D005518 ORTHO05D001269 6.5e-08 63.2 100 38.0
AUR62029840 Chenopodium quinoa HOM05D005518 ORTHO05D001269 8.5e-08 62.8 188 29.3
Actinidia16187 Actinidia chinensis HOM05D005518 ORTHO05D001269 1.1e-07 62.4 256 28.9
FAN04G1413 Fragaria x ananassa HOM05D005518 ORTHO05D001269 1.4e-07 62.0 115 35.7
FAN13G1318 Fragaria x ananassa HOM05D005518 ORTHO05D001269 1.4e-07 62.0 115 36.5
AT5G50350 Arabidopsis thaliana HOM05D005518 ORTHO05D001269 1.9e-07 61.6 100 39.0
FvH4_5g07650 Fragaria vesca HOM05D005518 ORTHO05D001269 2.5e-07 61.2 115 36.5
FAN25G1054 Fragaria x ananassa HOM05D005518 ORTHO05D001269 2.5e-07 61.2 133 31.6
QL10p004779 Quercus lobata HOM05D005518 ORTHO05D001269 2.5e-07 61.2 390 27.4
Cc04_g10180 Coffea canephora HOM05D005518 ORTHO05D001269 3.2e-07 60.8 316 24.4
Oeu006376.1 Olea europaea HOM05D005518 ORTHO05D001269 5.5e-07 60.1 96 37.5
PSO063G3591 Papaver somniferum HOM05D005518 ORTHO05D001269 5.5e-07 60.1 563 22.7
Carub.0008s1043 Capsella rubella HOM05D005518 ORTHO05D001269 7.2e-07 59.7 100 37.0
Peaxi162Scf00089g00324 Petunia axillaris HOM05D005518 ORTHO05D001269 7.2e-07 59.7 262 24.8
MSTRG.22916 Avicennia marina HOM05D005518 ORTHO05D001269 9.4e-07 59.3 591 23.5
C03p33530 Brassica napus HOM05D005518 ORTHO05D001269 1.2e-06 58.9 100 38.0
BolC3t15674H Brassica oleracea HOM05D005518 ORTHO05D001269 1.2e-06 58.9 100 38.0
BcaC01g04812 Brassica carinata HOM05D005518 ORTHO05D001269 1.6e-06 58.5 100 38.0
Oeu023474.2 Olea europaea HOM05D005518 ORTHO05D001269 1.6e-06 58.5 151 33.1
Sabra15G0113400 Salix brachista HOM05D005518 ORTHO05D001269 1.6e-06 58.5 131 32.8
unitig_22.g5337 Utricularia gibba HOM05D007286 ORTHO05D008955 1.6e-06 58.5 112 43.8
AL8G24460 Arabidopsis lyrata HOM05D005518 ORTHO05D001269 2.1e-06 58.2 100 37.0
Thhalv10013029m.g Eutrema salsugineum HOM05D005518 ORTHO05D001269 2.1e-06 58.2 100 38.0
A03p27800 Brassica napus HOM05D005518 ORTHO05D001269 3.6e-06 57.4 153 29.4
BraA03t11991Z Brassica rapa HOM05D005518 ORTHO05D001269 3.6e-06 57.4 153 29.4
Eucgr.K02750 Eucalyptus grandis HOM05D005518 ORTHO05D001269 6.1e-06 56.6 599 25.7
Medtr3g075070 Medicago truncatula HOM05D005518 ORTHO05D001269 6.1e-06 56.6 136 29.4
CDE03G0480 Ceratophyllum demersum HOM05D005518 ORTHO05D001269 7.9e-06 56.2 96 39.6
Dinv30991 Davidia involucrata HOM05D007286 ORTHO05D008955 7.9e-06 56.2 94 44.7
Dinv31112 Davidia involucrata HOM05D007286 ORTHO05D008955 7.9e-06 56.2 94 44.7
Glyma.06G172500 Glycine max HOM05D005518 ORTHO05D001269 7.9e-06 56.2 429 26.3


User provided reference genes

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