Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold142G35665 Striga asiatica HOM05D017394 ORTHO05D001737 6.8e-134 480.7 253 100.0
SGA_v2.0_scaffold113G31714 Striga asiatica HOM05D017394 ORTHO05D001737 3.4e-77 292.4 173 87.9
SGA_v2.0_scaffold37G14762 Striga asiatica HOM05D017394 ORTHO05D001737 8.5e-76 287.7 173 86.7
SGA_v2.0_scaffold143G35747 Striga asiatica HOM05D017394 ORTHO05D001737 1.9e-43 180.3 142 72.5
SGA_v2.0_scaffold191G40486 Striga asiatica HOM05D017394 ORTHO05D001737 9.8e-40 167.9 177 59.9
SGA_v2.0_scaffold288G47234 Striga asiatica HOM05D017394 ORTHO05D001737 4.6e-37 159.1 177 58.8
SGA_v2.0_scaffold50G18424 Striga asiatica HOM05D017394 ORTHO05D001737 3.2e-30 136.3 112 71.4
SGA_v2.0_scaffold332G48948 Striga asiatica HOM05D017394 ORTHO05D001737 3.3e-27 126.3 164 50.6
Oeu037430.1 Olea europaea HOM05D001878 ORTHO05D001737 1.4e-17 94.4 151 45.7
SalBow5G0976 Salvia bowleyana HOM05D007698 ORTHO05D009663 3.1e-17 93.2 127 45.7
SalBow5G4762 Salvia bowleyana HOM05D007698 ORTHO05D009663 3.1e-17 93.2 127 45.7
unitig_0.g2758 Utricularia gibba HOM05D001878 ORTHO05D001737 1.5e-16 90.9 142 44.4
Oeu026349.1 Olea europaea HOM05D001878 ORTHO05D001737 3.4e-16 89.7 190 38.9
unitig_748.g7119 Utricularia gibba HOM05D001878 ORTHO05D001737 4.4e-16 89.4 138 42.0
MSTRG.4940 Avicennia marina HOM05D001878 ORTHO05D001737 2.9e-15 86.7 144 42.4
Oeu019262.1 Olea europaea HOM05D001878 ORTHO05D001737 6.4e-15 85.5 186 37.1
Lsat_1_v5_gn_4_40001 Lactuca sativa HOM05D001878 ORTHO05D001737 3.9e-12 76.3 145 37.2
Peaxi162Scf00853g00433 Petunia axillaris HOM05D001878 ORTHO05D001737 6.6e-12 75.5 122 42.6
Cpa.g.sc41.83 Carica papaya HOM05D001878 ORTHO05D001737 1.5e-11 74.3 126 40.5
Cc02_g25370 Coffea canephora HOM05D001878 ORTHO05D001737 1.5e-11 74.3 144 35.4
Lsat_1_v5_gn_1_84200 Lactuca sativa HOM05D001878 ORTHO05D001737 1.5e-11 74.3 157 36.9
COL.COLO4_18392 Corchorus olitorius HOM05D001878 ORTHO05D001737 1.9e-11 73.9 130 40.0
Gohir.A08G139800 Gossypium hirsutum HOM05D001878 ORTHO05D001737 7.3e-11 72.0 197 32.0
Migut.N01727 Erythranthe guttata HOM05D001878 ORTHO05D001737 1.2e-10 71.2 96 43.8
TWI14G1354 Tripterygium wilfordii HOM05D001878 ORTHO05D001737 1.2e-10 71.2 155 36.1
Gohir.D08G160800 Gossypium hirsutum HOM05D001878 ORTHO05D001737 1.6e-10 70.9 196 31.6
Gorai.004G167100 Gossypium raimondii HOM05D001878 ORTHO05D001737 1.6e-10 70.9 196 31.6
Potri.014G051200 Populus trichocarpa HOM05D001878 ORTHO05D001737 1.6e-10 70.9 149 36.9
DCAR_029489 Daucus carota HOM05D001878 ORTHO05D001737 2.1e-10 70.5 102 42.2
Sabra14G0036200 Salix brachista HOM05D001878 ORTHO05D001737 2.1e-10 70.5 149 36.9
Duzib133G0474 Durio zibethinus HOM05D001878 ORTHO05D001737 3.6e-10 69.7 113 41.6
Sabra14G0038300 Salix brachista HOM05D001878 ORTHO05D001737 3.6e-10 69.7 152 38.2
PGSC0003DMG400001696 Solanum tuberosum HOM05D001878 ORTHO05D001737 3.6e-10 69.7 188 34.6
CAN.G756.42 Capsicum annuum HOM05D001878 ORTHO05D001737 4.7e-10 69.3 142 36.6
Cfa011046 Carpinus fangiana HOM05D001878 ORTHO05D001737 4.7e-10 69.3 112 40.2
Haze_02877 Corylus avellana HOM05D001878 ORTHO05D001737 4.7e-10 69.3 112 40.2
Thecc.01G400100 Theobroma cacao HOM05D001878 ORTHO05D001737 4.7e-10 69.3 113 41.6
Nitab4.5_0000563g0150 Nicotiana tabacum HOM05D001878 ORTHO05D001737 6.2e-10 68.9 175 33.1
Glyma.07G254502 Glycine max HOM05D001878 ORTHO05D001737 8.1e-10 68.6 132 38.6
Glyma.08G051800 Glycine max HOM05D001878 ORTHO05D001737 8.1e-10 68.6 103 42.7
Sopen01g035660 Solanum pennellii HOM05D001878 ORTHO05D001737 8.1e-10 68.6 188 33.0
SGA_v2.0_scaffold143G35746 Striga asiatica HOM05D056464 ORTHO05D001737 8.1e-10 68.6 39 87.2
VMungo1383G0933 Vigna mungo HOM05D001878 ORTHO05D001737 8.1e-10 68.6 139 35.3
Atru.chr5.102 Acer truncatum HOM05D001878 ORTHO05D001737 1.1e-09 68.2 137 37.2
TWI59G0138 Tripterygium wilfordii HOM05D001878 ORTHO05D001737 1.1e-09 68.2 211 31.3
CANSAT25G3641 Cannabis sativa HOM05D001878 ORTHO05D001737 1.4e-09 67.8 116 42.2
Nitab4.5_0011684g0010 Nicotiana tabacum HOM05D001878 ORTHO05D001737 1.4e-09 67.8 151 35.8
Potri.002G139500 Populus trichocarpa HOM05D001878 ORTHO05D001737 1.4e-09 67.8 153 35.3
PGR042G1541 Punica granatum HOM05D001878 ORTHO05D001737 1.8e-09 67.4 137 37.2
VMungo1215G1720 Vigna mungo HOM05D001878 ORTHO05D001737 1.8e-09 67.4 117 39.3
Ciclev10020863m.g Citrus clementina HOM05D001878 ORTHO05D001737 2.4e-09 67.0 117 39.3
Phvul.003G097500 Phaseolus vulgaris HOM05D001878 ORTHO05D001737 2.4e-09 67.0 103 41.7
Phvul.008G049300 Phaseolus vulgaris HOM05D001878 ORTHO05D001737 3.1e-09 66.6 139 34.5
Rhsim01G0141600 Rhododendron simsii HOM05D001878 ORTHO05D001737 3.1e-09 66.6 128 39.1
CiPaw.13G024400 Carya illinoinensis HOM05D001878 ORTHO05D001737 4.0e-09 66.2 103 41.7
Solyc01g088820.2 Solanum lycopersicum HOM05D001878 ORTHO05D001737 4.0e-09 66.2 173 32.4
Ca_21569_v3 Cicer arietinum L. HOM05D001878 ORTHO05D001737 5.2e-09 65.9 103 40.8
CiPaw.14G018500 Carya illinoinensis HOM05D001878 ORTHO05D001737 6.9e-09 65.5 103 41.7
Duzib268G0102 Durio zibethinus HOM05D001878 ORTHO05D001737 6.9e-09 65.5 113 38.9
MD07G1097300 Malus domestica HOM05D001878 ORTHO05D001737 6.9e-09 65.5 113 38.1
Glyma.18G248000 Glycine max HOM05D001878 ORTHO05D001737 1.2e-08 64.7 138 36.2
MD02G1219900 Malus domestica HOM05D001878 ORTHO05D001737 1.5e-08 64.3 113 37.2
QL04p028592 Quercus lobata HOM05D001878 ORTHO05D001737 1.5e-08 64.3 108 39.8
QL04p028713 Quercus lobata HOM05D001878 ORTHO05D001737 1.5e-08 64.3 108 39.8
Aa31LG1G26270 Aethionema arabicum HOM05D001878 ORTHO05D001737 2.0e-08 63.9 171 31.6
Manes.05G056800 Manihot esculenta HOM05D001878 ORTHO05D001737 2.0e-08 63.9 149 34.9
Psat4g031080 Pisum sativum HOM05D001878 ORTHO05D001737 2.0e-08 63.9 144 36.1
Sp4g26780 Schrenkiella parvula HOM05D001878 ORTHO05D001737 2.0e-08 63.9 120 36.7
Lsat_1_v5_gn_1_84280 Lactuca sativa HOM05D001878 ORTHO05D001737 2.6e-08 63.5 155 33.5
Psat3g099720 Pisum sativum HOM05D001878 ORTHO05D001737 3.4e-08 63.2 137 37.2
CSS0031983 Camellia sinensis var. sinensis HOM05D001878 ORTHO05D001737 4.4e-08 62.8 106 37.7
FAN10G3061 Fragaria x ananassa HOM05D001878 ORTHO05D001737 4.4e-08 62.8 116 38.8
HanXRQChr01g0017711 Helianthus annuus HOM05D001878 ORTHO05D001737 4.4e-08 62.8 103 38.8
RcHm_v2.0_Chr1g0345291 Rosa chinensis HOM05D001878 ORTHO05D001737 5.8e-08 62.4 110 38.2
Lalb_Chr13g0290701 Lupinus albus HOM05D001878 ORTHO05D001737 7.6e-08 62.0 160 34.4
Ah.01g019780 Amaranthus hybridus HOM05D001878 ORTHO05D001737 9.9e-08 61.6 103 39.8
Medtr4g117990 Medicago truncatula HOM05D001878 ORTHO05D001737 9.9e-08 61.6 113 37.2
TPR.G28130 Trifolium pratense HOM05D001878 ORTHO05D001737 9.9e-08 61.6 111 37.8
RcHm_v2.0_Chr7g0205651 Rosa chinensis HOM05D001878 ORTHO05D001737 1.3e-07 61.2 126 36.5
CDE04G2863 Ceratophyllum demersum HOM05D001878 ORTHO05D001737 1.7e-07 60.8 170 32.9
SHI13627 Sapria himalayana HOM05D001878 ORTHO05D001737 1.7e-07 60.8 148 33.1
CARHR139940 Cardamine hirsuta HOM05D001878 ORTHO05D001737 2.2e-07 60.5 153 32.7
Lalb_Chr07g0177461 Lupinus albus HOM05D001878 ORTHO05D001737 2.2e-07 60.5 107 39.3
Nn1g00752 Nelumbo nucifera HOM05D001878 ORTHO05D001737 2.2e-07 60.5 103 38.8
MBI04_g13859_MAGBIO Magnolia biondii HOM05D001878 ORTHO05D001737 2.9e-07 60.1 153 35.3
Dinv44041 Davidia involucrata HOM05D001878 ORTHO05D001737 3.8e-07 59.7 99 39.4
ECA248G2444 Erigeron canadensis HOM05D001878 ORTHO05D001737 3.8e-07 59.7 108 37.0
FAN01G1421 Fragaria x ananassa HOM05D001878 ORTHO05D001737 3.8e-07 59.7 107 38.3
Lj4g0024312 Lotus japonicus HOM05D001878 ORTHO05D001737 3.8e-07 59.7 136 34.6
Carub.0004s2728 Capsella rubella HOM05D001878 ORTHO05D001737 4.9e-07 59.3 191 29.3
Glyma.09G245300 Glycine max HOM05D001878 ORTHO05D001737 4.9e-07 59.3 192 30.7
FvH4_7g09240 Fragaria vesca HOM05D001878 ORTHO05D001737 6.4e-07 58.9 110 37.3
BcaC02g12281 Brassica carinata HOM05D001878 ORTHO05D001737 8.4e-07 58.5 136 31.6
C04p05690 Brassica napus HOM05D001878 ORTHO05D001737 8.4e-07 58.5 136 31.6
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 8.4e-07 58.5 152 34.9
Dinv43604 Davidia involucrata HOM05D001878 ORTHO05D001737 8.4e-07 58.5 99 37.4
FAN03G2199 Fragaria x ananassa HOM05D001878 ORTHO05D001737 1.1e-06 58.2 107 37.4
FAN06G1067 Fragaria x ananassa HOM05D001878 ORTHO05D001737 1.1e-06 58.2 107 37.4
FAN10G3306 Fragaria x ananassa HOM05D001878 ORTHO05D001737 1.1e-06 58.2 107 37.4
Lj1g0024989 Lotus japonicus HOM05D001878 ORTHO05D001737 1.4e-06 57.8 191 30.4
PSO782G1295 Papaver somniferum HOM05D001878 ORTHO05D001737 2.4e-06 57.0 114 35.1
BcaC01g05201 Brassica carinata HOM05D001878 ORTHO05D001737 3.2e-06 56.6 112 34.8
MELO3C006287.2 Cucumis melo HOM05D001878 ORTHO05D001737 4.2e-06 56.2 105 38.1
CsaV3_3G010680 Cucumis sativus L. HOM05D001878 ORTHO05D001737 4.2e-06 56.2 105 38.1
Medtr7g081190 Medicago truncatula HOM05D001878 ORTHO05D001737 4.2e-06 56.2 140 35.7
Nitab4.5_0006594g0090 Nicotiana tabacum HOM05D001878 ORTHO05D001737 4.2e-06 56.2 104 38.5
Hma1.2p1_0632F.1_g192450 Hydrangea macrophylla HOM05D001878 ORTHO05D001737 5.4e-06 55.8 108 35.2
AL4G43780 Arabidopsis lyrata HOM05D001878 ORTHO05D001737 7.1e-06 55.5 139 30.9
PSO063G3234 Papaver somniferum HOM05D001878 ORTHO05D001737 7.1e-06 55.5 114 34.2
BcaB04g18388 Brassica carinata HOM05D001878 ORTHO05D001737 9.3e-06 55.1 119 33.6
BolC4t22199H Brassica oleracea HOM05D001878 ORTHO05D001737 9.3e-06 55.1 133 31.6
Thhalv10001488m.g Eutrema salsugineum HOM05D001878 ORTHO05D001737 9.3e-06 55.1 120 34.2


User provided reference genes

Program Settings