Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 0.0e+00 1825.1 920 100.0
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 0.0e+00 1530.0 970 80.5
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1529.2 974 79.8
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 0.0e+00 1529.2 979 79.5
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 0.0e+00 1527.3 854 89.2
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1523.8 977 79.8
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1523.5 892 85.4
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1523.1 976 79.6
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 0.0e+00 1521.5 899 84.6
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 0.0e+00 1518.4 906 84.7
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 0.0e+00 1518.4 964 80.2
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 0.0e+00 1516.1 889 85.2
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 0.0e+00 1516.1 894 85.0
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 0.0e+00 1515.7 964 79.7
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 0.0e+00 1511.9 944 81.2
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 0.0e+00 1511.5 846 88.1
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1510.0 925 82.5
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 0.0e+00 1508.4 911 83.9
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 0.0e+00 1507.3 935 82.5
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 0.0e+00 1506.5 888 85.5
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1506.1 887 84.6
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 0.0e+00 1505.3 907 84.1
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 0.0e+00 1504.2 886 84.9
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 0.0e+00 1501.1 893 83.9
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1500.3 954 79.8
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 0.0e+00 1500.3 915 83.0
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1500.0 886 84.8
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1499.6 958 79.9
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1497.3 860 86.9
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1496.9 894 83.6
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 0.0e+00 1496.9 915 82.5
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 0.0e+00 1495.7 906 83.3
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1495.3 976 78.7
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 0.0e+00 1495.3 924 81.4
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1494.9 955 79.7
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1494.2 854 86.9
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1493.8 879 84.0
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1493.0 904 82.9
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1492.6 885 84.4
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1489.9 871 84.8
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 0.0e+00 1489.6 942 80.5
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 0.0e+00 1487.6 844 87.7
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1486.9 981 77.4
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 0.0e+00 1486.5 963 78.5
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 0.0e+00 1486.5 894 83.1
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 0.0e+00 1485.3 852 86.4
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 0.0e+00 1485.3 896 83.0
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 0.0e+00 1484.5 954 79.2
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1483.8 854 86.1
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1482.2 847 86.4
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 0.0e+00 1478.8 903 82.5
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1478.8 847 86.0
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1478.8 854 85.7
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 0.0e+00 1478.8 886 83.0
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1478.0 854 85.5
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1476.5 954 79.6
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1475.7 888 83.3
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 0.0e+00 1475.3 897 81.2
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 0.0e+00 1473.0 841 86.9
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1468.8 853 85.5
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1467.2 854 85.4
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 0.0e+00 1466.1 889 81.7
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 0.0e+00 1465.7 894 82.2
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1465.7 847 85.7
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 0.0e+00 1465.3 846 85.3
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 0.0e+00 1464.5 897 82.5
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1458.0 888 81.6
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 0.0e+00 1457.2 898 80.7
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1456.0 901 81.9
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 0.0e+00 1451.0 930 79.1
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 0.0e+00 1450.6 898 80.6
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 0.0e+00 1450.6 886 81.4
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1447.2 854 83.8
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1444.5 886 81.4
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1443.7 851 83.5
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 0.0e+00 1442.6 895 80.0
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1442.6 896 80.5
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1442.6 896 80.5
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 0.0e+00 1441.0 905 79.2
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 0.0e+00 1439.9 862 83.1
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1437.2 896 80.4
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 0.0e+00 1436.4 943 78.2
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1436.0 852 82.3
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1436.0 851 82.7
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1434.9 851 82.8
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 0.0e+00 1432.5 854 82.6
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1431.0 896 80.1
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1430.6 993 74.7
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1430.2 895 79.3
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1430.2 895 79.3
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1429.8 895 79.3
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1429.5 895 79.3
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1429.1 890 79.8
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1428.7 933 78.7
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1427.2 903 79.0
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1426.4 903 78.8
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1424.5 898 79.1
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1422.5 851 82.3
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 0.0e+00 1421.8 854 82.0
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1421.4 844 82.5
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1420.6 902 78.7
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1419.1 871 81.1
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 0.0e+00 1416.4 883 79.2
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1409.8 876 79.6
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1407.1 869 79.7
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1407.1 852 81.3
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1404.4 851 80.6
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 0.0e+00 1401.7 774 90.4
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1401.7 852 81.2
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1399.8 875 80.2
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1382.9 949 75.3
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1379.8 856 79.6
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 0.0e+00 1366.7 893 79.2
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 0.0e+00 1364.4 850 78.5
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 0.0e+00 1349.7 944 74.3
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 0.0e+00 1348.6 852 77.5
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 0.0e+00 1346.6 854 78.2
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1345.1 823 81.0
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 0.0e+00 1345.1 852 77.5
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1336.2 854 80.1
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1334.7 826 80.4
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1319.3 871 76.6
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1307.7 784 81.6
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1290.0 784 82.8
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1288.1 868 75.6
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1263.1 852 76.3
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1261.5 865 76.9
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1219.1 720 83.6
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1212.2 727 81.8
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1208.0 777 78.4
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1187.9 846 71.5
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 0.0e+00 1172.5 852 68.3
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 0.0e+00 1147.9 854 67.1
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1098.6 633 86.6
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 7.4e-303 1043.9 581 89.7
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 2.4e-293 1012.3 862 60.3
Medtr4g118350 Medicago truncatula HOM05D003956 ORTHO05D004850 3.5e-260 902.1 564 79.4
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 1.3e-254 883.6 908 53.6
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.6e-217 760.4 497 78.1
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.9e-205 720.3 535 69.9
AUR62035455 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.9e-202 710.3 511 71.4
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 5.1e-195 685.6 443 77.9
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 2.1e-185 653.7 459 77.1
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 1.8e-179 634.0 740 49.1
HanXRQChr03g0080571 Helianthus annuus HOM05D003956 ORTHO05D004850 1.8e-179 634.0 417 77.0
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 4.5e-159 566.2 383 77.5
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 1.7e-153 547.7 338 81.4
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 2.2e-134 484.2 293 82.9
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.7e-113 414.8 415 55.7
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 3.2e-104 384.0 313 66.1
HanXRQChr16g0518081 Helianthus annuus HOM05D003956 ORTHO05D004850 1.8e-91 341.7 218 78.9
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 8.9e-91 339.3 253 69.2
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 4.6e-71 273.9 219 67.6
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 4.2e-64 250.8 211 62.6
unitig_749.g14057 Utricularia gibba HOM05D003956 ORTHO05D004850 1.8e-59 235.3 151 78.1
AagrBONN_evm.TU.Sc2ySwM_362.937 Anthoceros agrestis HOM05D003956 ORTHO05D004850 2.1e-47 195.3 119 79.0
arahy.Tifrunner.gnm1.ann1.S9XVUY Arachis hypogaea HOM05D003956 ORTHO05D004850 2.4e-43 181.8 268 42.5
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 1.2e-31 142.9 90 75.6
arahy.Tifrunner.gnm1.ann1.LGH8AH Arachis hypogaea HOM05D003956 ORTHO05D004850 1.2e-29 136.3 83 79.5
Pp3c6_6540 Physcomitrium patens HOM05D003956 ORTHO05D004850 8.2e-28 130.2 93 65.6
GSVIVG01018502001 Vitis vinifera HOM05D003956 ORTHO05D004850 4.1e-27 127.9 77 80.5
Pp3s196_40 Physcomitrium patens HOM05D003956 ORTHO05D044360 1.9e-24 119.0 423 27.7
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 1.6e-23 115.9 90 67.8
BcaC09g50244 Brassica carinata HOM05D003956 ORTHO05D004850 1.4e-22 112.8 65 80.0
QL06p005983 Quercus lobata HOM05D003956 ORTHO05D004850 4.0e-22 111.3 130 51.5
TPR.G26738 Trifolium pratense HOM05D003956 ORTHO05D000576 1.2e-18 99.8 56 78.6
TPR.G35464 Trifolium pratense HOM05D003956 ORTHO05D004850 7.2e-16 90.5 60 68.3
arahy.Tifrunner.gnm1.ann1.57CL3B Arachis hypogaea HOM05D003956 ORTHO05D004850 3.1e-11 75.1 51 72.5
arahy.Tifrunner.gnm1.ann1.V4Y3U4 Arachis hypogaea HOM05D003956 ORTHO05D004850 4.1e-11 74.7 49 75.5
SGA_v2.0_scaffold86G26869 Striga asiatica HOM05D000924 ORTHO05D001209 1.2e-10 73.2 40 92.5
HanXRQChr09g0261911 Helianthus annuus HOM05D000495 ORTHO05D000357 1.3e-09 69.7 46 67.4
arahy.Tifrunner.gnm1.ann1.GGZS5I Arachis hypogaea HOM05D003956 ORTHO05D004850 2.9e-09 68.6 68 57.4
Nn8g40271 Nelumbo nucifera HOM05D001541 ORTHO05D001465 6.6e-09 67.4 36 80.6
Pp3c5_22980 Physcomitrium patens HOM05D003956 ORTHO05D004850 2.5e-08 65.5 43 69.8
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 1.4e-06 59.7 49 61.2


User provided reference genes

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