Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold141G35518 Striga asiatica HOM05D000145 ORTHO05D399266 2.3e-111 405.6 206 100.0
SGA_v2.0_scaffold22G09924 Striga asiatica HOM05D000145 ORTHO05D000115 5.0e-18 95.5 64 76.6
Dinv40936 Davidia involucrata HOM05D000145 ORTHO05D000115 5.2e-15 85.5 69 59.4
CSS0031750 Camellia sinensis var. sinensis HOM05D000145 ORTHO05D000115 1.5e-14 84.0 69 59.4
Nitab4.5_0007212g0030 Nicotiana tabacum HOM05D000145 ORTHO05D000115 1.5e-14 84.0 69 59.4
Actinidia29295 Actinidia chinensis HOM05D000145 ORTHO05D000115 2.0e-14 83.6 69 58.0
unitig_32.g11665 Utricularia gibba HOM05D000145 ORTHO05D000115 2.6e-14 83.2 63 63.5
Lj7A206G25 Lonicera japonica HOM05D000145 ORTHO05D000115 3.4e-14 82.8 69 59.4
Cc08_g07790 Coffea canephora HOM05D000145 ORTHO05D000115 4.4e-14 82.4 69 58.0
DCAR_004370 Daucus carota HOM05D000145 ORTHO05D000115 4.4e-14 82.4 69 56.5
Nitab4.5_0000508g0060 Nicotiana tabacum HOM05D000145 ORTHO05D000115 4.4e-14 82.4 69 58.0
SalBow4G0362 Salvia bowleyana HOM05D000145 ORTHO05D000115 5.8e-14 82.0 69 60.9
Actinidia01323 Actinidia chinensis HOM05D000145 ORTHO05D000115 7.5e-14 81.6 69 58.0
Migut.A00331 Erythranthe guttata HOM05D000145 ORTHO05D000115 9.8e-14 81.3 69 59.4
MSTRG.13979 Avicennia marina HOM05D000145 ORTHO05D000115 1.3e-13 80.9 69 56.5
HanXRQChr09g0261151 Helianthus annuus HOM05D000145 ORTHO05D000115 1.7e-13 80.5 69 56.5
ECA234G4383 Erigeron canadensis HOM05D000145 ORTHO05D000115 2.2e-13 80.1 69 53.6
AUR62024778 Chenopodium quinoa HOM05D000145 ORTHO05D000115 2.9e-13 79.7 69 59.4
DCAR_001247 Daucus carota HOM05D000145 ORTHO05D000115 2.9e-13 79.7 63 58.7
Peaxi162Scf00922g00110 Petunia axillaris HOM05D000145 ORTHO05D000115 2.9e-13 79.7 63 60.3
PGSC0003DMG400007390 Solanum tuberosum HOM05D000145 ORTHO05D000115 2.9e-13 79.7 92 44.6
CAN.G348.14 Capsicum annuum HOM05D000145 ORTHO05D000115 3.7e-13 79.3 92 44.6
Sopen08g021190 Solanum pennellii HOM05D000145 ORTHO05D000115 3.7e-13 79.3 92 44.6
TWI34G0753 Tripterygium wilfordii HOM05D000145 ORTHO05D000115 4.9e-13 79.0 69 58.0
Solyc08g067260.4 Solanum lycopersicum HOM05D000145 ORTHO05D000115 8.3e-13 78.2 92 42.4
EL10Ac2g02455 Beta vulgaris HOM05D000145 ORTHO05D000115 1.1e-12 77.8 69 56.5
Oeu045343.1 Olea europaea HOM05D000145 ORTHO05D000115 1.1e-12 77.8 69 60.9
Prupe.1G401500 Prunus persica HOM05D000145 ORTHO05D000115 1.1e-12 77.8 69 56.5
HPP92_016571 Vanilla planifolia HOM05D000145 ORTHO05D000115 1.1e-12 77.8 69 55.1
HPP92_016592 Vanilla planifolia HOM05D000145 ORTHO05D000115 1.1e-12 77.8 69 55.1
Ah.10g025410 Amaranthus hybridus HOM05D000145 ORTHO05D000115 1.4e-12 77.4 68 57.4
Glyma.04G057800 Glycine max HOM05D000145 ORTHO05D000115 1.4e-12 77.4 67 56.7
Glyma.06G058500 Glycine max HOM05D000145 ORTHO05D000115 1.4e-12 77.4 67 56.7
Phvul.009G084500 Phaseolus vulgaris HOM05D000145 ORTHO05D000115 1.4e-12 77.4 67 56.7
Hund25552 Selenicereus undatus HOM05D000145 ORTHO05D000115 1.4e-12 77.4 69 58.0
Cpa.g.sc82.18 Carica papaya HOM05D000145 ORTHO05D000115 1.9e-12 77.0 69 55.1
ATR0681G132 Amborella trichopoda HOM05D000145 ORTHO05D000115 2.4e-12 76.6 69 50.7
CiPaw.15G093900 Carya illinoinensis HOM05D000145 ORTHO05D000115 2.4e-12 76.6 69 55.1
Potri.006G218000 Populus trichocarpa HOM05D000145 ORTHO05D000115 2.4e-12 76.6 69 55.1
MSTRG.25844 Avicennia marina HOM05D000145 ORTHO05D000115 3.2e-12 76.3 69 59.4
Ca_15801_v3 Cicer arietinum L. HOM05D000145 ORTHO05D000115 3.2e-12 76.3 67 53.7
PSO724G1028 Papaver somniferum HOM05D000145 ORTHO05D000115 3.2e-12 76.3 69 52.2
PSO386G0029 Papaver somniferum HOM05D000145 ORTHO05D000115 4.1e-12 75.9 69 52.2
VMungo1309G2794 Vigna mungo HOM05D000145 ORTHO05D000115 4.1e-12 75.9 67 55.2
FAN20G2350 Fragaria x ananassa HOM05D000145 ORTHO05D000115 5.4e-12 75.5 69 55.1
Lsat_1_v5_gn_5_79280 Lactuca sativa HOM05D000145 ORTHO05D000115 5.4e-12 75.5 69 53.6
FvH4_2g36990 Fragaria vesca HOM05D000145 ORTHO05D000115 7.0e-12 75.1 69 55.1
FAN15G3403 Fragaria x ananassa HOM05D000145 ORTHO05D000115 7.0e-12 75.1 69 55.1
FAN27G1840 Fragaria x ananassa HOM05D000145 ORTHO05D000115 7.0e-12 75.1 69 55.1
MSTRG.11769 Avicennia marina HOM05D000145 ORTHO05D000115 9.2e-12 74.7 69 58.0
Cfa021433 Carpinus fangiana HOM05D000145 ORTHO05D000115 9.2e-12 74.7 69 55.1
Haze_18328 Corylus avellana HOM05D000145 ORTHO05D000115 9.2e-12 74.7 69 55.1
Lj1g0012898 Lotus japonicus HOM05D000145 ORTHO05D000115 9.2e-12 74.7 67 53.7
MD08G1046600 Malus domestica HOM05D000145 ORTHO05D000115 9.2e-12 74.7 68 54.4
TPR.G21440 Trifolium pratense HOM05D000145 ORTHO05D000115 9.2e-12 74.7 69 53.6
Duzib150G1209 Durio zibethinus HOM05D000145 ORTHO05D000115 1.2e-11 74.3 92 41.3
Medtr3g105550 Medicago truncatula HOM05D000145 ORTHO05D000115 1.2e-11 74.3 67 55.2
RcHm_v2.0_Chr6g0304771 Rosa chinensis HOM05D000145 ORTHO05D000115 1.2e-11 74.3 67 55.2
Sabra06G0168000 Salix brachista HOM05D000145 ORTHO05D000115 1.2e-11 74.3 67 53.7
Aqoxy7G04031 Aquilegia oxysepala HOM05D000145 ORTHO05D000115 1.6e-11 73.9 67 49.3
Thecc.09G066200 Theobroma cacao HOM05D000145 ORTHO05D000115 1.6e-11 73.9 69 52.2
ClCG05G015940 Citrullus lanatus HOM05D000145 ORTHO05D000115 2.0e-11 73.6 69 52.2
Gohir.A13G188400 Gossypium hirsutum HOM05D000145 ORTHO05D000115 2.0e-11 73.6 69 52.2
Gohir.D13G195400 Gossypium hirsutum HOM05D000145 ORTHO05D000115 2.0e-11 73.6 69 52.2
Gorai.013G221500 Gossypium raimondii HOM05D000145 ORTHO05D000115 2.0e-11 73.6 69 52.2
Ciclev10007953m.g Citrus clementina HOM05D000145 ORTHO05D000115 2.7e-11 73.2 69 52.2
HanXRQChr10g0309921 Helianthus annuus HOM05D000145 ORTHO05D000115 2.7e-11 73.2 69 49.3
Manes.16G087600 Manihot esculenta HOM05D000145 ORTHO05D000115 3.5e-11 72.8 69 55.1
SGA_v2.0_scaffold111G31538 Striga asiatica HOM05D000145 ORTHO05D023466 3.5e-11 72.8 51 74.5
Thhalv10001951m.g Eutrema salsugineum HOM05D000145 ORTHO05D000115 4.6e-11 72.4 69 49.3
arahy.Tifrunner.gnm1.ann1.WQ1I1V Arachis hypogaea HOM05D000145 ORTHO05D000115 6.0e-11 72.0 67 53.7
arahy.Tifrunner.gnm1.ann1.YW30D2 Arachis hypogaea HOM05D000145 ORTHO05D000115 6.0e-11 72.0 67 53.7
CsaV3_4G036210 Cucumis sativus L. HOM05D000145 ORTHO05D000115 6.0e-11 72.0 69 50.7
Eucgr.C03177 Eucalyptus grandis HOM05D000145 ORTHO05D000115 7.8e-11 71.6 69 53.6
Psat5g035600 Pisum sativum HOM05D000145 ORTHO05D000115 7.8e-11 71.6 69 50.7
THA.LOC104804449 Tarenaya hassleriana HOM05D000145 ORTHO05D000115 7.8e-11 71.6 69 50.7
Atru.chr7.1815 Acer truncatum HOM05D000145 ORTHO05D000115 1.0e-10 71.2 83 44.6
AL4G18830 Arabidopsis lyrata HOM05D000145 ORTHO05D000115 1.0e-10 71.2 69 49.3
Os03g0181500 Oryza sativa ssp. japonica HOM05D000145 ORTHO05D000115 1.0e-10 71.2 86 44.2
TAR624G0478 Trochodendron aralioides HOM05D000145 ORTHO05D000115 1.0e-10 71.2 69 52.2
A04p20290 Brassica napus HOM05D000145 ORTHO05D000115 1.7e-10 70.5 69 47.8
BraA04t17608Z Brassica rapa HOM05D000145 ORTHO05D000115 1.7e-10 70.5 69 47.8
CARHR115080 Cardamine hirsuta HOM05D000145 ORTHO05D000115 1.7e-10 70.5 69 46.4
A09p55360 Brassica napus HOM05D000145 ORTHO05D000115 2.3e-10 70.1 69 47.8
BraA09t40937Z Brassica rapa HOM05D000145 ORTHO05D000115 2.3e-10 70.1 69 47.8
Lalb_Chr08g0244631 Lupinus albus HOM05D000145 ORTHO05D000115 2.3e-10 70.1 67 49.3
Zm00001eb006020 Zea mays HOM05D000145 ORTHO05D000115 2.3e-10 70.1 86 43.0
SHI28018 Sapria himalayana HOM05D000145 ORTHO05D000115 3.9e-10 69.3 67 50.7
Aa31LG5G9550 Aethionema arabicum HOM05D000145 ORTHO05D000115 5.0e-10 68.9 69 44.9
AT2G26250 Arabidopsis thaliana HOM05D000145 ORTHO05D000115 6.6e-10 68.6 69 47.8
BcaC07g40832 Brassica carinata HOM05D000145 ORTHO05D000115 6.6e-10 68.6 69 46.4
C08p38280 Brassica napus HOM05D000145 ORTHO05D000115 6.6e-10 68.6 69 46.4
BolC8t51403H Brassica oleracea HOM05D000145 ORTHO05D000115 6.6e-10 68.6 69 46.4
Manes.03G055800 Manihot esculenta HOM05D000145 ORTHO05D000115 6.6e-10 68.6 69 47.8
C04p56000 Brassica napus HOM05D000145 ORTHO05D000115 8.6e-10 68.2 69 46.4
BolC4t27133H Brassica oleracea HOM05D000145 ORTHO05D000115 8.6e-10 68.2 69 46.4
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 1.1e-09 67.8 85 45.9
Sp4g06450 Schrenkiella parvula HOM05D000145 ORTHO05D000115 1.5e-09 67.4 69 46.4
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 1.5e-09 67.4 85 45.9
Rhsim13G0218100 Rhododendron simsii HOM05D000145 ORTHO05D000115 1.9e-09 67.0 86 45.3
PGR044G2748 Punica granatum HOM05D000145 ORTHO05D000115 4.3e-09 65.9 69 47.8
CANSAT25G0643 Cannabis sativa HOM05D000145 ORTHO05D000115 9.5e-09 64.7 59 50.8
Lsat_1_v5_gn_8_70361 Lactuca sativa HOM05D000145 ORTHO05D000115 2.8e-08 63.2 69 44.9
SEGI_21634 Sequoiadendron giganteum HOM05D000145 ORTHO05D000115 2.8e-08 63.2 69 49.3
vmacro04135 Vaccinium macrocarpon HOM05D000145 ORTHO05D000115 3.6e-08 62.8 86 43.0
Carub.0004s0607 Capsella rubella HOM05D000145 ORTHO05D000115 8.1e-08 61.6 69 44.9
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 8.1e-08 61.6 82 47.6
HanXRQChr05g0136391 Helianthus annuus HOM05D000145 ORTHO05D000115 1.1e-07 61.2 69 49.3
Pp3c10_2580 Physcomitrium patens HOM05D000145 ORTHO05D000115 1.8e-07 60.5 53 54.7
SMO367G0128 Selaginella moellendorffii HOM05D000145 ORTHO05D000115 2.3e-07 60.1 62 46.8
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 3.1e-07 59.7 82 43.9
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 4.0e-07 59.3 83 44.6
AagrBONN_evm.TU.Sc2ySwM_344.1094 Anthoceros agrestis HOM05D000145 ORTHO05D000115 6.8e-07 58.5 64 43.8
ECA236G4161 Erigeron canadensis HOM05D000145 ORTHO05D000115 6.8e-07 58.5 84 40.5
Gohir.D06G080532 Gossypium hirsutum HOM05D000145 ORTHO05D023466 6.8e-07 58.5 69 46.4
Ah.09g226510 Amaranthus hybridus HOM05D000145 ORTHO05D000115 8.9e-07 58.2 73 45.2
Ah.12g063040 Amaranthus hybridus HOM05D000145 ORTHO05D000115 8.9e-07 58.2 73 45.2
Thecc.04G242800 Theobroma cacao HOM05D000145 ORTHO05D000115 1.2e-06 57.8 51 52.9
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 1.5e-06 57.4 85 42.4
HPP92_000670 Vanilla planifolia HOM05D000145 ORTHO05D000115 1.5e-06 57.4 62 53.2
Duzib093G2250 Durio zibethinus HOM05D000145 ORTHO05D000115 2.6e-06 56.6 76 39.5
Pp3c1_37250 Physcomitrium patens HOM05D000145 ORTHO05D000115 2.6e-06 56.6 60 46.7
Peaxi162Scf00788g00213 Petunia axillaris HOM05D000145 ORTHO05D000115 3.4e-06 56.2 79 35.4
Hund09162 Selenicereus undatus HOM05D000145 ORTHO05D000115 3.4e-06 56.2 62 45.2
CAN.G749.26 Capsicum annuum HOM05D000145 ORTHO05D000115 4.4e-06 55.8 67 37.3
Migut.L00187 Erythranthe guttata HOM05D000145 ORTHO05D000115 4.4e-06 55.8 61 47.5
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 4.4e-06 55.8 87 43.7
Oeu045192.1 Olea europaea HOM05D000145 ORTHO05D000115 4.4e-06 55.8 62 46.8
MSTRG.25859 Avicennia marina HOM05D000145 ORTHO05D000115 5.8e-06 55.5 62 43.5
BcaC07g41253 Brassica carinata HOM05D000145 ORTHO05D000115 5.8e-06 55.5 75 41.3
C08p42590 Brassica napus HOM05D000145 ORTHO05D000115 5.8e-06 55.5 75 41.3
BolC8t51820H Brassica oleracea HOM05D000145 ORTHO05D000115 5.8e-06 55.5 75 41.3
Gohir.A09G221400 Gossypium hirsutum HOM05D000145 ORTHO05D000115 5.8e-06 55.5 48 54.2
Gohir.D10G148000 Gossypium hirsutum HOM05D000145 ORTHO05D000115 5.8e-06 55.5 51 51.0
Gorai.011G165200 Gossypium raimondii HOM05D000145 ORTHO05D000115 5.8e-06 55.5 51 51.0
Nitab4.5_0001856g0070 Nicotiana tabacum HOM05D000145 ORTHO05D000115 5.8e-06 55.5 67 38.8
Zm00001eb385870 Zea mays HOM05D000145 ORTHO05D000115 5.8e-06 55.5 50 54.0
CDE11G0120 Ceratophyllum demersum HOM05D000145 ORTHO05D000115 7.5e-06 55.1 92 34.8
Cc03_g04570 Coffea canephora HOM05D000145 ORTHO05D000115 7.5e-06 55.1 67 38.8
Duzib052G1122 Durio zibethinus HOM05D000145 ORTHO05D000115 7.5e-06 55.1 51 51.0
Gohir.D09G223500 Gossypium hirsutum HOM05D000145 ORTHO05D000115 7.5e-06 55.1 47 55.3
Gorai.006G245000 Gossypium raimondii HOM05D000145 ORTHO05D000115 7.5e-06 55.1 47 55.3
Lsat_1_v5_gn_6_21780 Lactuca sativa HOM05D000145 ORTHO05D000115 7.5e-06 55.1 51 51.0
MBI13_g01707_MAGBIO Magnolia biondii HOM05D000145 ORTHO05D000115 7.5e-06 55.1 56 46.4
MD08G1031000 Malus domestica HOM05D000145 ORTHO05D000115 7.5e-06 55.1 58 44.8
MD15G1026500 Malus domestica HOM05D000145 ORTHO05D000115 7.5e-06 55.1 58 44.8
Peaxi162Scf00467g00920 Petunia axillaris HOM05D000145 ORTHO05D000115 7.5e-06 55.1 90 33.3
Pp3c14_21410 Physcomitrium patens HOM05D000145 ORTHO05D000115 7.5e-06 55.1 52 50.0
Potri.018G032200 Populus trichocarpa HOM05D000145 ORTHO05D000115 7.5e-06 55.1 50 54.0
Prupe.1G378600 Prunus persica HOM05D000145 ORTHO05D000115 7.5e-06 55.1 58 44.8
SMO358G0253 Selaginella moellendorffii HOM05D000145 ORTHO05D000115 7.5e-06 55.1 45 48.9
ATR0716G077 Amborella trichopoda HOM05D000145 ORTHO05D000115 9.9e-06 54.7 51 51.0
CARHR118530 Cardamine hirsuta HOM05D000145 ORTHO05D000115 9.9e-06 54.7 43 58.1
Gohir.A03G078900 Gossypium hirsutum HOM05D000145 ORTHO05D000115 9.9e-06 54.7 80 37.5
Gohir.D02G094700 Gossypium hirsutum HOM05D000145 ORTHO05D000115 9.9e-06 54.7 80 37.5
Gorai.005G108000 Gossypium raimondii HOM05D000145 ORTHO05D000115 9.9e-06 54.7 80 37.5
Hma1.2p1_0018F.1_g012900 Hydrangea macrophylla HOM05D000145 ORTHO05D000115 9.9e-06 54.7 53 49.1
Peaxi162Scf00170g00034 Petunia axillaris HOM05D000145 ORTHO05D000115 9.9e-06 54.7 62 46.8
Pp3c8_1690 Physcomitrium patens HOM05D000145 ORTHO05D000115 9.9e-06 54.7 57 47.4
SMO117G0105 Selaginella moellendorffii HOM05D000145 ORTHO05D000115 9.9e-06 54.7 57 47.4
Sc08g0006890 Simmondsia chinensis HOM05D000145 ORTHO05D000115 9.9e-06 54.7 64 40.6


User provided reference genes

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