Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold140G35502 Striga asiatica HOM05D000963 ORTHO05D005131 4.3e-68 261.2 127 100.0
C06p23110 Brassica napus HOM05D000963 ORTHO05D005131 4.3e-28 128.3 66 92.4
C09p24700 Brassica napus HOM05D000963 ORTHO05D005131 4.3e-28 128.3 66 92.4
BraSC143t45666Z Brassica rapa HOM05D000963 ORTHO05D005131 4.3e-28 128.3 66 92.4
BraSC25t45900Z Brassica rapa HOM05D000963 ORTHO05D005131 4.3e-28 128.3 66 92.4
Sed0026848 Sechium edule HOM05D000963 ORTHO05D005131 4.3e-28 128.3 66 92.4
VMungo0464G1437 Vigna mungo HOM05D000963 ORTHO05D005131 5.6e-28 127.9 65 92.3
VMungo1215G3364 Vigna mungo HOM05D001592 ORTHO05D001533 5.6e-28 127.9 65 92.3
arahy.Tifrunner.gnm1.ann1.A049RL Arachis hypogaea HOM05D000963 ORTHO05D005131 2.1e-27 125.9 62 93.5
arahy.Tifrunner.gnm1.ann1.R4PVYI Arachis hypogaea HOM05D000963 ORTHO05D004715 8.2e-27 124.0 62 93.5
Ca_03776_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 1.8e-26 122.9 65 89.2
Ca_03777_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 1.8e-26 122.9 65 89.2
Sopen08g004620 Solanum pennellii HOM05D001396 ORTHO05D000493 6.9e-26 120.9 69 87.0
VMungo0720G2312 Vigna mungo HOM05D000963 ORTHO05D005131 6.9e-26 120.9 63 90.5
Gohir.1Z049680 Gossypium hirsutum HOM05D000963 ORTHO05D005131 3.4e-25 118.6 60 93.3
LjContig00319g0011411 Lotus japonicus HOM05D000963 ORTHO05D005131 4.5e-25 118.2 58 94.8
Medtr3g035650 Medicago truncatula HOM05D000963 ORTHO05D005131 1.0e-24 117.1 65 87.7
Medtr8g040260 Medicago truncatula HOM05D000963 ORTHO05D005131 3.2e-23 112.1 65 83.1
arahy.Tifrunner.gnm1.ann1.LAST4K Arachis hypogaea HOM05D000963 ORTHO05D005131 2.1e-22 109.4 65 76.9
Glyma.05G084600 Glycine max HOM05D000963 ORTHO05D005131 2.1e-22 109.4 62 83.9
arahy.Tifrunner.gnm1.ann1.9M10FC Arachis hypogaea HOM05D000940 ORTHO05D000782 6.0e-22 107.8 60 85.0
CsaV3_4G036830 Cucumis sativus L. HOM05D000963 ORTHO05D005131 1.1e-18 97.1 52 90.4
Gorai.002G152100 Gossypium raimondii HOM05D000963 ORTHO05D005131 5.3e-18 94.7 66 74.2
arahy.Tifrunner.gnm1.ann1.MJQ8WH Arachis hypogaea HOM05D000963 ORTHO05D011117 9.0e-18 94.0 53 83.0
CSS0000719 Camellia sinensis var. sinensis HOM05D000963 ORTHO05D005131 9.0e-18 94.0 54 83.3
Gohir.D01G121360 Gossypium hirsutum HOM05D000963 ORTHO05D005131 2.6e-17 92.4 66 72.7
SGA_v2.0_scaffold575G53000 Striga asiatica HOM05D000963 ORTHO05D401387 1.4e-15 86.7 41 97.6
Solyc00g500039.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 1.9e-15 86.3 42 95.2
Solyc00g500044.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 1.9e-15 86.3 42 95.2
Solyc00g500083.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 1.9e-15 86.3 42 95.2
Solyc00g500301.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 1.9e-15 86.3 42 95.2
Solyc00g500325.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 1.9e-15 86.3 42 95.2
Manes.02G203601 Manihot esculenta HOM05D000963 ORTHO05D005131 2.5e-15 85.9 66 65.2
arahy.Tifrunner.gnm1.ann1.7DQW64 Arachis hypogaea HOM05D000963 ORTHO05D005131 3.2e-15 85.5 44 93.2
arahy.Tifrunner.gnm1.ann1.GV9JXL Arachis hypogaea HOM05D000743 ORTHO05D005131 1.6e-14 83.2 47 85.1
Sopen11g020200 Solanum pennellii HOM05D000004 ORTHO05D000002 2.7e-14 82.4 47 87.2
Sc25g0002260 Simmondsia chinensis HOM05D000963 ORTHO05D005131 3.9e-13 78.6 65 66.2
Phvul.002G028400 Phaseolus vulgaris HOM05D000963 ORTHO05D005131 5.7e-12 74.7 65 63.1
Sopen01g026990 Solanum pennellii HOM05D000963 ORTHO05D005131 9.7e-12 73.9 45 82.2
SHI36889 Sapria himalayana HOM05D000963 ORTHO05D005131 4.8e-11 71.6 40 90.0
arahy.Tifrunner.gnm1.ann1.ZJEP1E Arachis hypogaea HOM05D000963 ORTHO05D011791 3.4e-09 65.5 34 94.1
Nitab4.5_0004841g0030 Nicotiana tabacum HOM05D000963 ORTHO05D005131 2.9e-08 62.4 31 90.3
Gorai.008G144300 Gossypium raimondii HOM05D000963 ORTHO05D005131 6.5e-08 61.2 49 61.2
Gohir.D07G041825 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.9e-07 59.7 43 62.8
Gorai.001G044400 Gossypium raimondii HOM05D000963 ORTHO05D005131 1.9e-07 59.7 43 62.8
Potri.002G073450 Populus trichocarpa HOM05D000963 ORTHO05D005131 2.5e-07 59.3 54 55.6
Medtr4g076920 Medicago truncatula HOM05D008922 ORTHO05D010978 9.4e-07 57.4 50 62.0
SabraMtG0005800 Salix brachista HOM05D000963 ORTHO05D011791 3.6e-06 55.5 39 71.8


User provided reference genes

Program Settings