Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold140G35465 Striga asiatica HOM05D000234 ORTHO05D012768 3.9e-54 214.5 108 100.0
SGA_v2.0_scaffold72G24166 Striga asiatica HOM05D000234 ORTHO05D012768 8.8e-22 107.1 58 91.4
SGA_v2.0_scaffold366G50053 Striga asiatica HOM05D000234 ORTHO05D012768 5.7e-21 104.4 57 89.5
SGA_v2.0_scaffold489G52409 Striga asiatica HOM05D000234 ORTHO05D012768 5.7e-21 104.4 58 89.7
SGA_v2.0_scaffold50G18595 Striga asiatica HOM05D000234 ORTHO05D012768 3.1e-19 98.6 58 84.5
SGA_v2.0_scaffold196G41002 Striga asiatica HOM05D000234 ORTHO05D001258 5.3e-19 97.8 61 78.7
Ciclev10003971m.g Citrus clementina HOM05D000234 ORTHO05D001258 1.7e-09 66.2 61 55.7
Dinv09387 Davidia involucrata HOM05D000234 ORTHO05D001258 8.5e-09 63.9 52 59.6
Psat2g022680 Pisum sativum HOM05D000234 ORTHO05D001258 1.5e-08 63.2 54 55.6
Cc00_g14230 Coffea canephora HOM05D000234 ORTHO05D001258 1.9e-08 62.8 52 55.8
Haze_23676 Corylus avellana HOM05D000234 ORTHO05D001258 2.5e-08 62.4 53 58.5
Manes.18G121900 Manihot esculenta HOM05D000234 ORTHO05D001258 2.5e-08 62.4 53 60.4
Migut.N01871 Erythranthe guttata HOM05D000234 ORTHO05D001258 3.2e-08 62.0 54 59.3
Peaxi162Scf00520g00076 Petunia axillaris HOM05D000234 ORTHO05D001258 3.2e-08 62.0 61 52.5
Cfa010266 Carpinus fangiana HOM05D000234 ORTHO05D001258 5.5e-08 61.2 53 56.6
Hma1.2p1_0121F.1_g057470 Hydrangea macrophylla HOM05D000234 ORTHO05D001258 5.5e-08 61.2 52 57.7
Sed0016540 Sechium edule HOM05D000234 ORTHO05D001258 5.5e-08 61.2 54 55.6
Sed0026464 Sechium edule HOM05D000234 ORTHO05D001258 5.5e-08 61.2 61 50.8
Lj9C704G17 Lonicera japonica HOM05D000234 ORTHO05D001258 9.4e-08 60.5 52 55.8
TPR.G27312 Trifolium pratense HOM05D000234 ORTHO05D001258 9.4e-08 60.5 54 57.4
Medtr5g087870 Medicago truncatula HOM05D000234 ORTHO05D001258 1.2e-07 60.1 54 50.0
PSO339G0407 Papaver somniferum HOM05D000234 ORTHO05D001258 1.2e-07 60.1 66 51.5
CiPaw.13G121000 Carya illinoinensis HOM05D000234 ORTHO05D001258 1.6e-07 59.7 53 58.5
Potri.001G219700 Populus trichocarpa HOM05D000234 ORTHO05D001258 1.6e-07 59.7 53 56.6
Sabra16G0124600 Salix brachista HOM05D000234 ORTHO05D001258 1.6e-07 59.7 53 56.6
TWI79G0571 Tripterygium wilfordii HOM05D000234 ORTHO05D001258 1.6e-07 59.7 60 51.7
Ca_06159_v3 Cicer arietinum L. HOM05D000234 ORTHO05D001258 2.1e-07 59.3 88 38.6
DCAR_018978 Daucus carota HOM05D000234 ORTHO05D001258 2.7e-07 58.9 53 58.5
arahy.Tifrunner.gnm1.ann1.FWIM6U Arachis hypogaea HOM05D000234 ORTHO05D001258 3.6e-07 58.5 54 55.6
Eucgr.J00634 Eucalyptus grandis HOM05D000234 ORTHO05D001258 3.6e-07 58.5 61 49.2
TPR.G22223 Trifolium pratense HOM05D000234 ORTHO05D001258 3.6e-07 58.5 54 50.0
GSVIVG01025868001 Vitis vinifera HOM05D000234 ORTHO05D001258 3.6e-07 58.5 60 50.0
PSO541G2228 Papaver somniferum HOM05D000234 ORTHO05D001258 4.7e-07 58.2 60 48.3
PSO675G0189 Papaver somniferum HOM05D000234 ORTHO05D001258 4.7e-07 58.2 60 48.3
Solyc01g096750.1 Solanum lycopersicum HOM05D000234 ORTHO05D001258 4.7e-07 58.2 48 56.2
Sopen01g040460 Solanum pennellii HOM05D000234 ORTHO05D001258 4.7e-07 58.2 48 56.2
TAR636G2831 Trochodendron aralioides HOM05D000234 ORTHO05D012768 4.7e-07 58.2 51 56.9
CiPaw.14G090600 Carya illinoinensis HOM05D000234 ORTHO05D001258 8.0e-07 57.4 57 50.9
Glyma.14G041100 Glycine max HOM05D000234 ORTHO05D001258 8.0e-07 57.4 54 48.1
HanXRQChr14g0445731 Helianthus annuus HOM05D000234 ORTHO05D001258 8.0e-07 57.4 54 51.9
Manes.02G209900 Manihot esculenta HOM05D000234 ORTHO05D001258 8.0e-07 57.4 60 51.7
Peaxi162Scf00050g00169 Petunia axillaris HOM05D000234 ORTHO05D001258 8.0e-07 57.4 53 56.6
CAN.G65.192 Capsicum annuum HOM05D000234 ORTHO05D001258 1.0e-06 57.0 53 56.6
Oeu040183.1 Olea europaea HOM05D000234 ORTHO05D001258 1.0e-06 57.0 53 56.6
Peaxi162Scf00973g00316 Petunia axillaris HOM05D000234 ORTHO05D001258 1.0e-06 57.0 53 56.6
Phvul.006G021200 Phaseolus vulgaris HOM05D000234 ORTHO05D001258 1.0e-06 57.0 54 55.6
TWI31G0029 Tripterygium wilfordii HOM05D000234 ORTHO05D001258 1.0e-06 57.0 60 48.3
CSS0028151 Camellia sinensis var. sinensis HOM05D000234 ORTHO05D001258 1.4e-06 56.6 51 54.9
Medtr3g078647 Medicago truncatula HOM05D000234 ORTHO05D001258 1.4e-06 56.6 54 53.7
Nitab4.5_0002368g0130 Nicotiana tabacum HOM05D000234 ORTHO05D001258 1.8e-06 56.2 53 56.6
Nitab4.5_0010831g0030 Nicotiana tabacum HOM05D000234 ORTHO05D001258 1.8e-06 56.2 53 56.6
QL01p020174 Quercus lobata HOM05D000234 ORTHO05D001258 1.8e-06 56.2 53 54.7
Glyma.02G274900 Glycine max HOM05D000234 ORTHO05D001258 2.3e-06 55.8 54 46.3
Nitab4.5_0004903g0020 Nicotiana tabacum HOM05D000234 ORTHO05D001258 2.3e-06 55.8 48 52.1
TAR633G1821 Trochodendron aralioides HOM05D000234 ORTHO05D001258 2.3e-06 55.8 53 54.7
CAN.G714.11 Capsicum annuum HOM05D000234 ORTHO05D001258 3.0e-06 55.5 53 54.7
SalBow6G2542 Salvia bowleyana HOM05D000234 ORTHO05D001258 3.0e-06 55.5 53 54.7
Solyc01g008960.3 Solanum lycopersicum HOM05D000234 ORTHO05D001258 3.0e-06 55.5 53 54.7
Sopen01g004450 Solanum pennellii HOM05D000234 ORTHO05D001258 3.0e-06 55.5 53 54.7
PGSC0003DMG400022707 Solanum tuberosum HOM05D000234 ORTHO05D001258 3.0e-06 55.5 53 54.7
SGA_v2.0_scaffold26G11366 Striga asiatica HOM05D000234 ORTHO05D001258 3.0e-06 55.5 53 54.7
SGA_v2.0_scaffold29G12168 Striga asiatica HOM05D000234 ORTHO05D001258 3.0e-06 55.5 81 42.0
CSS0011124 Camellia sinensis var. sinensis HOM05D000234 ORTHO05D001258 4.0e-06 55.1 54 51.9
CAN.G134.39 Capsicum annuum HOM05D000234 ORTHO05D001258 4.0e-06 55.1 47 53.2
SalBow6G6989 Salvia bowleyana HOM05D000234 ORTHO05D001258 4.0e-06 55.1 58 50.0
Hund08088 Selenicereus undatus HOM05D000234 ORTHO05D001258 4.0e-06 55.1 53 50.9
CSS0000297 Camellia sinensis var. sinensis HOM05D000234 ORTHO05D001258 5.2e-06 54.7 54 51.9
CSS0039674 Camellia sinensis var. sinensis HOM05D000234 ORTHO05D001258 5.2e-06 54.7 54 51.9
Dinv10720 Davidia involucrata HOM05D000234 ORTHO05D001258 5.2e-06 54.7 74 43.2
Dinv24001 Davidia involucrata HOM05D000234 ORTHO05D001258 5.2e-06 54.7 53 54.7
Hma1.2p1_0765F.1_g215080 Hydrangea macrophylla HOM05D000234 ORTHO05D001258 5.2e-06 54.7 51 54.9
Ciclev10014186m.g Citrus clementina HOM05D000234 ORTHO05D001258 6.7e-06 54.3 60 48.3
MBI19_g03676_MAGBIO Magnolia biondii HOM05D000234 ORTHO05D001258 6.7e-06 54.3 56 51.8
Hma1.2p1_0218F.1_g092800 Hydrangea macrophylla HOM05D000234 ORTHO05D001258 8.8e-06 53.9 53 56.6
Lj2C935T1 Lonicera japonica HOM05D000234 ORTHO05D001258 8.8e-06 53.9 53 54.7
Nitab4.5_0000428g0010 Nicotiana tabacum HOM05D000234 ORTHO05D001258 8.8e-06 53.9 53 54.7
Potri.008G010500 Populus trichocarpa HOM05D000234 ORTHO05D001258 8.8e-06 53.9 61 45.9
Sed0026403 Sechium edule HOM05D000234 ORTHO05D001258 8.8e-06 53.9 61 45.9


User provided reference genes

Program Settings