Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold13G06769 Striga asiatica HOM05D005095 ORTHO05D006156 7.8e-188 660.2 312 100.0
MSTRG.19241 Avicennia marina HOM05D005095 ORTHO05D006156 8.4e-158 560.5 311 82.3
Migut.J00973 Erythranthe guttata HOM05D005095 ORTHO05D006156 5.8e-151 537.7 310 79.7
Oeu018347.1 Olea europaea HOM05D005095 ORTHO05D006156 2.2e-150 535.8 307 80.8
SalBow3G2853 Salvia bowleyana HOM05D005095 ORTHO05D006156 7.9e-148 527.3 298 81.2
Dinv21237 Davidia involucrata HOM05D005095 ORTHO05D006156 1.1e-141 506.9 305 76.4
unitig_578.g15761 Utricularia gibba HOM05D000146 ORTHO05D006156 1.4e-141 506.5 301 77.4
Manes.08G022501 Manihot esculenta HOM05D005095 ORTHO05D006156 6.0e-140 501.1 314 74.2
Nn6g35006 Nelumbo nucifera HOM05D005095 ORTHO05D006156 1.0e-139 500.4 309 76.1
Sopen09g003900 Solanum pennellii HOM05D005095 ORTHO05D006156 6.7e-139 497.7 305 74.1
Nitab4.5_0009950g0030 Nicotiana tabacum HOM05D005095 ORTHO05D006156 8.7e-139 497.3 312 73.7
CSS0041742 Camellia sinensis var. sinensis HOM05D005095 ORTHO05D006156 9.6e-138 493.8 308 74.0
PGSC0003DMG400002713 Solanum tuberosum HOM05D005095 ORTHO05D006156 2.8e-137 492.3 305 73.1
PGR004G0044 Punica granatum HOM05D005095 ORTHO05D006156 6.2e-137 491.1 303 75.2
Peaxi162Scf00820g00056 Petunia axillaris HOM05D005095 ORTHO05D006156 8.1e-137 490.7 308 73.4
TWI74G0549 Tripterygium wilfordii HOM05D005095 ORTHO05D006156 1.2e-135 486.9 306 71.6
DCAR_007746 Daucus carota HOM05D005095 ORTHO05D006156 2.6e-135 485.7 301 72.8
Lj2A132T56 Lonicera japonica HOM05D005095 ORTHO05D006156 2.6e-135 485.7 302 75.2
HanXRQChr14g0432521 Helianthus annuus HOM05D005095 ORTHO05D006156 3.4e-135 485.3 305 72.1
ECA238G3195 Erigeron canadensis HOM05D005095 ORTHO05D006156 4.5e-135 485.0 307 72.3
CANSAT51G0008 Cannabis sativa HOM05D005095 ORTHO05D006156 7.6e-135 484.2 303 72.9
CANSAT51G0010 Cannabis sativa HOM05D005095 ORTHO05D006156 7.6e-135 484.2 303 72.9
CANSAT51G0015 Cannabis sativa HOM05D005095 ORTHO05D006156 7.6e-135 484.2 303 72.9
Ciclev10012289m.g Citrus clementina HOM05D005095 ORTHO05D006156 7.6e-135 484.2 305 72.1
MD12G1020700 Malus domestica HOM05D005095 ORTHO05D006156 7.6e-135 484.2 309 72.2
Nitab4.5_0008581g0020 Nicotiana tabacum HOM05D005095 ORTHO05D006156 7.6e-135 484.2 311 73.0
Prupe.7G115300 Prunus persica HOM05D005095 ORTHO05D006156 2.2e-134 482.6 307 72.3
Aqoxy4G02848 Aquilegia oxysepala HOM05D005095 ORTHO05D006156 2.9e-134 482.3 300 73.0
Actinidia05448 Actinidia chinensis HOM05D005095 ORTHO05D006156 3.8e-134 481.9 308 72.7
QL07p039953 Quercus lobata HOM05D005095 ORTHO05D006156 4.9e-134 481.5 307 72.3
MELO3C009446.2 Cucumis melo HOM05D005095 ORTHO05D006156 6.5e-134 481.1 302 73.2
Aa31LG3G2470 Aethionema arabicum HOM05D005095 ORTHO05D006156 1.1e-133 480.3 301 73.1
RcHm_v2.0_Chr3g0472431 Rosa chinensis HOM05D005095 ORTHO05D006156 2.5e-133 479.2 306 70.6
Atru.chr8.1610 Acer truncatum HOM05D005095 ORTHO05D006156 5.5e-133 478.0 310 70.6
FAN14G2314 Fragaria x ananassa HOM05D005095 ORTHO05D006156 7.1e-133 477.6 306 71.2
CAN.G824.21 Capsicum annuum HOM05D005095 ORTHO05D006156 2.1e-132 476.1 305 71.8
Rhsim03G0078800 Rhododendron simsii HOM05D005095 ORTHO05D006156 2.1e-132 476.1 304 73.4
THA.LOC104816365 Tarenaya hassleriana HOM05D005095 ORTHO05D006156 3.5e-132 475.3 302 71.2
Cfa016561 Carpinus fangiana HOM05D005095 ORTHO05D006156 7.9e-132 474.2 310 70.6
CsaV3_3G036990 Cucumis sativus L. HOM05D005095 ORTHO05D006156 7.9e-132 474.2 302 71.5
Manes.08G022601 Manihot esculenta HOM05D005095 ORTHO05D006156 1.8e-131 473.0 322 68.6
Lj5g0003292 Lotus japonicus HOM05D005095 ORTHO05D006156 3.0e-131 472.2 307 71.3
Lsat_1_v5_gn_2_22640 Lactuca sativa HOM05D005095 ORTHO05D006156 6.7e-131 471.1 305 70.5
Cpa.g.sc5.61 Carica papaya HOM05D005095 ORTHO05D006156 1.1e-130 470.3 314 68.8
TAR623G0504 Trochodendron aralioides HOM05D005095 ORTHO05D006156 1.5e-130 469.9 291 74.2
ClCG10G019200 Citrullus lanatus HOM05D005095 ORTHO05D006156 4.3e-130 468.4 314 69.7
Potri.002G156500 Populus trichocarpa HOM05D005095 ORTHO05D006156 4.3e-130 468.4 317 68.5
TPR.G5702 Trifolium pratense HOM05D005095 ORTHO05D006156 4.3e-130 468.4 309 69.6
CiPaw.10G006700 Carya illinoinensis HOM05D005095 ORTHO05D006156 9.6e-130 467.2 303 71.3
Thhalv10021191m.g Eutrema salsugineum HOM05D005095 ORTHO05D006156 9.6e-130 467.2 303 70.3
Sed0002679 Sechium edule HOM05D005095 ORTHO05D006156 1.3e-129 466.8 310 70.0
AL3G21250 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 1.6e-129 466.5 303 70.3
FAN09G4215 Fragaria x ananassa HOM05D005095 ORTHO05D006156 3.7e-129 465.3 306 69.6
MBI01_g08270_MAGBIO Magnolia biondii HOM05D005095 ORTHO05D006156 4.8e-129 464.9 302 71.2
Potri.002G156200 Populus trichocarpa HOM05D005095 ORTHO05D006156 4.8e-129 464.9 317 67.8
Sp3g08310 Schrenkiella parvula HOM05D005095 ORTHO05D006156 8.2e-129 464.2 303 70.3
AT3G09970 Arabidopsis thaliana HOM05D005095 ORTHO05D006156 1.8e-128 463.0 303 70.0
Ca_11632_v3 Cicer arietinum L. HOM05D005095 ORTHO05D006156 4.1e-128 461.8 303 70.6
arahy.Tifrunner.gnm1.ann1.133YU3 Arachis hypogaea HOM05D005095 ORTHO05D006156 6.9e-128 461.1 304 69.1
arahy.Tifrunner.gnm1.ann1.ARK388 Arachis hypogaea HOM05D005095 ORTHO05D006156 6.9e-128 461.1 304 69.1
Glyma.U031320 Glycine max HOM05D005095 ORTHO05D006156 9.0e-128 460.7 302 70.2
Nitab4.5_0004686g0050 Nicotiana tabacum HOM05D005095 ORTHO05D006156 9.0e-128 460.7 311 70.1
Lalb_Chr21g0315581 Lupinus albus HOM05D005095 ORTHO05D006156 1.2e-127 460.3 307 68.1
AUR62033539 Chenopodium quinoa HOM05D005095 ORTHO05D006156 1.5e-127 459.9 300 70.7
BolC5t34464H Brassica oleracea HOM05D005095 ORTHO05D006156 3.4e-127 458.8 303 69.0
C05p58070 Brassica napus HOM05D005095 ORTHO05D006156 4.5e-127 458.4 303 69.3
CARHR084480 Cardamine hirsuta HOM05D005095 ORTHO05D006156 4.5e-127 458.4 301 69.8
VMungo0720G2061 Vigna mungo HOM05D005095 ORTHO05D006156 4.5e-127 458.4 303 69.6
Nitab4.5_0004686g0040 Nicotiana tabacum HOM05D005095 ORTHO05D006156 5.9e-127 458.0 356 63.2
Medtr1g060860 Medicago truncatula HOM05D005095 ORTHO05D006156 7.6e-127 457.6 305 68.9
Sabra02G0124100 Salix brachista HOM05D005095 ORTHO05D006156 1.7e-126 456.4 342 63.5
Psat6g080360 Pisum sativum HOM05D005095 ORTHO05D006156 2.2e-126 456.1 302 71.5
A05p39050 Brassica napus HOM05D005095 ORTHO05D006156 3.8e-126 455.3 303 68.6
BraA05t22697Z Brassica rapa HOM05D005095 ORTHO05D006156 3.8e-126 455.3 303 68.6
Phvul.007G222200 Phaseolus vulgaris HOM05D005095 ORTHO05D006156 3.8e-126 455.3 303 70.0
RcHm_v2.0_Chr3g0472441 Rosa chinensis HOM05D005095 ORTHO05D006156 3.8e-126 455.3 306 67.0
MD14G1018000 Malus domestica HOM05D005095 ORTHO05D006156 1.1e-125 453.8 335 64.8
DCAR_013371 Daucus carota HOM05D005095 ORTHO05D006156 1.9e-125 453.0 329 65.3
TAR369G0658 Trochodendron aralioides HOM05D005095 ORTHO05D006156 4.2e-125 451.8 309 66.7
PSO339G4586 Papaver somniferum HOM05D005095 ORTHO05D006156 9.3e-125 450.7 300 68.3
COL.COLO4_29793 Corchorus olitorius HOM05D005095 ORTHO05D006156 1.2e-124 450.3 307 69.7
PSO384G1693 Papaver somniferum HOM05D005095 ORTHO05D006156 6.1e-124 448.0 300 67.7
vmacro07384 Vaccinium macrocarpon HOM05D005095 ORTHO05D006156 8.7e-123 444.1 311 68.8
CARHR084470 Cardamine hirsuta HOM05D005095 ORTHO05D006156 2.5e-122 442.6 303 67.3
Thecc.05G083800 Theobroma cacao HOM05D005095 ORTHO05D006156 3.3e-122 442.2 303 68.3
ATR0820G022 Amborella trichopoda HOM05D005095 ORTHO05D006156 1.8e-120 436.4 303 67.7
Thecc.05G084100 Theobroma cacao HOM05D005095 ORTHO05D006156 5.3e-120 434.9 303 67.0
Gohir.A04G065328 Gossypium hirsutum HOM05D005095 ORTHO05D006156 2.6e-119 432.6 306 66.3
Gohir.D04G102800 Gossypium hirsutum HOM05D005095 ORTHO05D006156 3.4e-119 432.2 306 67.3
Gorai.009G406100 Gossypium raimondii HOM05D005095 ORTHO05D006156 4.5e-119 431.8 306 67.0
AT3G09960 Arabidopsis thaliana HOM05D005095 ORTHO05D006156 1.0e-118 430.6 302 66.2
MELO3C009819.2 Cucumis melo HOM05D005095 ORTHO05D006156 5.0e-118 428.3 310 64.5
Duzib093G0109 Durio zibethinus HOM05D005095 ORTHO05D006156 1.4e-117 426.8 310 65.8
Eucgr.A01531 Eucalyptus grandis HOM05D005095 ORTHO05D006156 4.2e-117 425.2 302 67.5
BcaC05g29724 Brassica carinata HOM05D005095 ORTHO05D006156 1.2e-116 423.7 303 65.0
EL10Ac7g16967 Beta vulgaris HOM05D005095 ORTHO05D006156 2.7e-116 422.5 300 65.0
Gorai.009G405800 Gossypium raimondii HOM05D005095 ORTHO05D006156 3.6e-116 422.2 308 66.2
CsaV3_3G040830 Cucumis sativus L. HOM05D005095 ORTHO05D006156 1.0e-115 420.6 313 63.3
DCAR_013370 Daucus carota HOM05D005095 ORTHO05D006156 6.7e-115 417.9 305 64.3
C05p58080 Brassica napus HOM05D005095 ORTHO05D006156 1.5e-114 416.8 299 62.9
Carub.0003s0907 Capsella rubella HOM05D005095 ORTHO05D006156 1.7e-113 413.3 288 68.1
Os04g0409500 Oryza sativa ssp. japonica HOM05D005095 ORTHO05D006156 7.7e-111 404.4 300 60.7
Ah.06g189990 Amaranthus hybridus HOM05D005095 ORTHO05D006156 2.2e-110 402.9 308 61.0
DCAR_013372 Daucus carota HOM05D005095 ORTHO05D006156 1.9e-109 399.8 298 62.8
Sc02g0001070 Simmondsia chinensis HOM05D005095 ORTHO05D006156 4.2e-109 398.7 259 71.8
Zm00001eb421860 Zea mays HOM05D005095 ORTHO05D006156 4.2e-109 398.7 301 60.1
FvH4_6g18140 Fragaria vesca HOM05D005095 ORTHO05D006156 2.1e-108 396.4 252 71.4
Nn6g35008 Nelumbo nucifera HOM05D005095 ORTHO05D006156 3.6e-108 395.6 307 61.6
ECA238G1993 Erigeron canadensis HOM05D005095 ORTHO05D006156 1.0e-107 394.0 300 63.3
SEGI_28091 Sequoiadendron giganteum HOM05D005095 ORTHO05D006156 1.7e-105 386.7 300 61.3
Ah.06g189980 Amaranthus hybridus HOM05D005095 ORTHO05D006156 1.0e-102 377.5 299 60.9
AagrBONN_evm.TU.Sc2ySwM_117.2042 Anthoceros agrestis HOM05D005095 ORTHO05D006156 3.8e-102 375.6 305 60.0
BolC5t34465H Brassica oleracea HOM05D005095 ORTHO05D006156 1.3e-97 360.5 254 63.8
Sed0010579 Sechium edule HOM05D005095 ORTHO05D006156 1.3e-97 360.5 247 65.2
Pp3c12_22780 Physcomitrium patens HOM05D005095 ORTHO05D006156 3.7e-97 359.0 301 56.1
Mapoly0100s0026 Marchantia polymorpha HOM05D005095 ORTHO05D006156 5.9e-95 351.7 301 56.5
BcaC05g29723 Brassica carinata HOM05D005095 ORTHO05D006156 1.7e-94 350.1 300 55.0
CBR_g20302 Chara braunii HOM05D005095 ORTHO05D006156 9.1e-88 327.8 308 51.3
SMO352G0026 Selaginella moellendorffii HOM05D005095 ORTHO05D006156 3.5e-87 325.9 307 52.4
AL3G21240 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 8.0e-84 314.7 306 52.6
Duzib093G0628 Durio zibethinus HOM05D005095 ORTHO05D006156 1.2e-82 310.8 333 50.8
Gohir.D04G102500 Gossypium hirsutum HOM05D005095 ORTHO05D006156 2.8e-81 306.2 231 65.4
Solyc09g009170.4 Solanum lycopersicum HOM05D005095 ORTHO05D006156 4.9e-81 305.4 198 71.2
Gohir.A04G062650 Gossypium hirsutum HOM05D005095 ORTHO05D006156 2.0e-79 300.1 220 64.5
Cc06_g05420 Coffea canephora HOM05D005095 ORTHO05D006156 1.0e-75 287.7 182 75.3
GSVIVG01033803001 Vitis vinifera HOM05D005095 ORTHO05D006156 7.0e-72 275.0 182 72.5
CAN.G397.3 Capsicum annuum HOM05D005095 ORTHO05D006156 1.6e-68 263.8 187 66.8
CDE02G4719 Ceratophyllum demersum HOM05D005095 ORTHO05D006156 1.4e-64 250.8 176 67.6
Medtr1g060850 Medicago truncatula HOM05D005095 ORTHO05D006156 6.0e-63 245.4 165 68.5
BcaC05g29512 Brassica carinata HOM05D005095 ORTHO05D006156 5.6e-61 238.8 164 64.6
Haze_19563 Corylus avellana HOM05D000103 ORTHO05D000049 4.4e-50 202.6 138 64.5
Glyma.10G067302 Glycine max HOM05D005095 ORTHO05D006156 1.3e-49 201.1 135 70.4
MD14G1017800 Malus domestica HOM05D005095 ORTHO05D006156 1.1e-48 198.0 140 66.4
MCO16G241 Micromonas commoda HOM05D005095 ORTHO05D006156 9.6e-45 184.9 280 41.8
AL7G30480 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 1.4e-43 181.0 115 68.7
Sabra02G0123600 Salix brachista HOM05D005095 ORTHO05D006156 2.4e-43 180.3 169 55.0
Zm00001eb312570 Zea mays HOM05D005095 ORTHO05D006156 5.4e-40 169.1 122 59.8
Hund04015 Selenicereus undatus HOM05D005095 ORTHO05D006156 1.1e-37 161.4 113 63.7
HPP92_007823 Vanilla planifolia HOM05D005095 ORTHO05D006156 3.3e-37 159.8 125 64.8
BcaB02g09662 Brassica carinata HOM05D005095 ORTHO05D006156 2.4e-32 143.7 158 50.0
VMungo0720G1002 Vigna mungo HOM05D005095 ORTHO05D006156 6.7e-30 135.6 89 66.3
Nn6g35009 Nelumbo nucifera HOM05D005095 ORTHO05D006156 3.8e-25 119.8 116 54.3
TAR628G0764 Trochodendron aralioides HOM05D005095 ORTHO05D006156 4.0e-19 99.8 73 61.6
Prupe.3G199100 Prunus persica HOM05D005095 ORTHO05D006156 6.9e-19 99.0 63 68.3
Zm00001eb198060 Zea mays HOM05D005095 ORTHO05D006156 3.4e-18 96.7 63 66.7
Sabra14G0058200 Salix brachista HOM05D005095 ORTHO05D006156 2.6e-10 70.5 104 45.2
MD04G1094600 Malus domestica HOM05D005095 ORTHO05D245281 7.6e-10 68.9 69 53.6
Pp3c4_390 Physcomitrium patens HOM05D005095 ORTHO05D006156 1.9e-08 64.3 50 54.0
Phvul.011G099600 Phaseolus vulgaris HOM05D000115 ORTHO05D001535 3.0e-06 57.0 73 37.0
Lj3g0000823 Lotus japonicus HOM05D000115 ORTHO05D001535 3.9e-06 56.6 73 37.0
Lj3g0004215 Lotus japonicus HOM05D000115 ORTHO05D001535 3.9e-06 56.6 73 37.0
Ca_01629_v3 Cicer arietinum L. HOM05D000115 ORTHO05D001535 5.1e-06 56.2 73 37.0
Gohir.D08G017200 Gossypium hirsutum HOM05D000115 ORTHO05D001535 6.7e-06 55.8 73 35.6
Gorai.004G011600 Gossypium raimondii HOM05D000115 ORTHO05D001535 6.7e-06 55.8 73 35.6
Medtr4g050540 Medicago truncatula HOM05D000115 ORTHO05D001535 6.7e-06 55.8 73 35.6
Psat7g204720 Pisum sativum HOM05D000115 ORTHO05D001535 6.7e-06 55.8 73 35.6
VMungo1127G0409 Vigna mungo HOM05D000115 ORTHO05D001535 6.7e-06 55.8 73 35.6
BcaC06g33893 Brassica carinata HOM05D005095 ORTHO05D092937 8.7e-06 55.5 42 59.5
Ca_01075_v3 Cicer arietinum L. HOM05D000115 ORTHO05D001535 8.7e-06 55.5 73 35.6
Ca_19475_v3 Cicer arietinum L. HOM05D000115 ORTHO05D001535 8.7e-06 55.5 73 35.6
Ciclev10027742m.g Citrus clementina HOM05D000115 ORTHO05D001535 8.7e-06 55.5 73 35.6
Glyma.11G175955 Glycine max HOM05D000115 ORTHO05D001535 8.7e-06 55.5 73 35.6
Glyma.12G095300 Glycine max HOM05D000115 ORTHO05D001535 8.7e-06 55.5 73 35.6
Gohir.A08G007100 Gossypium hirsutum HOM05D000115 ORTHO05D001535 8.7e-06 55.5 73 35.6
Lalb_Chr03g0028451 Lupinus albus HOM05D000115 ORTHO05D001535 8.7e-06 55.5 73 35.6
Lalb_Chr19g0136221 Lupinus albus HOM05D000115 ORTHO05D001535 8.7e-06 55.5 73 35.6
Mapoly0018s0002 Marchantia polymorpha HOM05D000115 ORTHO05D001535 8.7e-06 55.5 73 35.6
Pp3c1_18530 Physcomitrium patens HOM05D000115 ORTHO05D001535 8.7e-06 55.5 73 35.6
Potri.009G016900 Populus trichocarpa HOM05D000115 ORTHO05D001535 8.7e-06 55.5 73 35.6
SGA_v2.0_scaffold100G29606 Striga asiatica HOM05D000115 ORTHO05D001535 8.7e-06 55.5 73 35.6
TPR.G4608 Trifolium pratense HOM05D000115 ORTHO05D001535 8.7e-06 55.5 73 35.6


User provided reference genes

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