Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 1.3e-293 1012.3 522 100.0
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 1.4e-234 816.2 524 81.3
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 9.2e-226 786.9 525 79.2
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 7.6e-212 740.7 539 72.9
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 3.8e-211 738.4 466 79.8
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 8.4e-211 737.3 527 74.0
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 4.1e-210 734.9 533 72.6
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 9.2e-210 733.8 466 79.2
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 1.2e-209 733.4 478 79.1
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 1.6e-209 733.0 476 79.4
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 7.8e-209 730.7 488 77.5
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 7.8e-209 730.7 430 84.2
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 8.7e-208 727.2 536 71.6
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 2.8e-206 722.2 524 72.1
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 8.1e-206 720.7 536 70.9
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 3.4e-204 715.3 499 73.7
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 3.8e-203 711.8 516 71.3
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 6.4e-203 711.1 485 75.7
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 5.4e-202 708.0 452 79.0
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 1.3e-200 703.4 491 73.7
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 1.3e-200 703.4 525 71.2
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 1.3e-200 703.4 531 70.2
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 1.7e-200 703.0 473 76.3
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 3.0e-200 702.2 528 70.6
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 7.3e-199 697.6 495 73.9
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 1.3e-198 696.8 470 74.7
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 1.3e-198 696.8 528 70.3
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 1.6e-198 696.4 530 69.4
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 1.6e-198 696.4 460 76.3
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 6.2e-198 694.5 476 75.4
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 1.4e-197 693.3 476 75.2
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 2.4e-197 692.6 433 80.4
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 9.0e-197 690.6 457 76.6
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 1.2e-196 690.3 529 71.1
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.2e-196 690.3 524 69.8
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 1.2e-196 690.3 452 77.0
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.4e-196 688.7 521 69.9
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 1.3e-195 686.8 526 69.2
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.2e-195 686.0 521 69.7
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 2.2e-195 686.0 477 73.8
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 2.9e-195 685.6 527 69.3
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.8e-195 685.3 535 68.6
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 4.9e-195 684.9 451 76.5
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 8.4e-195 684.1 473 74.6
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 1.4e-194 683.3 494 70.9
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 6.0e-193 677.9 542 66.6
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 1.8e-192 676.4 518 69.1
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 1.8e-192 676.4 518 69.1
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 3.0e-192 675.6 528 68.9
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 3.9e-192 675.2 511 69.1
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 1.1e-191 673.7 532 67.9
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 1.9e-191 672.9 556 65.1
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 1.9e-191 672.9 462 74.2
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 3.3e-191 672.2 522 68.2
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 3.3e-191 672.2 500 71.0
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 1.6e-190 669.8 499 70.1
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 8.1e-190 667.5 452 74.8
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 1.4e-189 666.8 533 68.1
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 4.0e-189 665.2 433 77.8
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 9.0e-189 664.1 528 66.7
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 9.0e-189 664.1 527 67.4
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 2.9e-187 659.1 456 73.0
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 9.3e-186 654.1 522 65.7
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 9.3e-186 654.1 449 73.7
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 1.8e-184 649.8 409 80.4
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 5.1e-184 648.3 482 68.9
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 1.3e-182 643.7 482 68.5
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 3.7e-182 642.1 482 68.5
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 1.1e-178 630.6 534 62.9
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 1.9e-178 629.8 526 65.8
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 3.2e-178 629.0 461 69.6
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 5.5e-178 628.2 514 64.8
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 9.3e-178 627.5 482 66.6
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 2.1e-177 626.3 742 50.0
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 2.7e-177 625.9 480 68.3
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 6.0e-177 624.8 482 66.6
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 6.0e-177 624.8 482 66.6
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 1.0e-176 624.0 553 63.7
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 1.8e-176 623.2 514 64.4
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 2.3e-176 622.9 553 60.6
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 3.9e-176 622.1 527 63.4
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 6.7e-176 621.3 485 67.2
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 8.7e-176 620.9 482 66.6
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 2.5e-175 619.4 479 67.4
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 7.4e-175 617.8 482 65.8
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 1.6e-174 616.7 486 65.8
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 2.8e-174 615.9 525 62.5
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 3.7e-174 615.5 498 64.5
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 4.6e-169 598.6 609 58.0
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 1.4e-168 597.0 530 62.5
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 2.3e-168 596.3 410 73.4
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 5.3e-165 585.1 403 72.7
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 1.5e-164 583.6 403 72.5
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 1.0e-163 580.9 392 74.5
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 1.0e-163 580.9 531 62.1
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 2.5e-162 576.2 529 60.5
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 2.7e-161 572.8 448 66.1
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 3.9e-160 568.9 469 62.9
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 2.8e-158 562.8 419 70.6
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 1.4e-157 560.5 359 79.1
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 9.1e-157 557.8 470 64.0
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 1.2e-156 557.4 399 71.7
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 3.8e-155 552.4 495 61.0
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 1.1e-154 550.8 647 52.6
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 1.1e-151 540.8 359 76.0
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 1.1e-149 534.3 497 58.4
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 1.0e-139 501.1 451 59.4
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 1.4e-136 490.7 457 56.2
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 2.1e-129 466.8 448 59.2
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 1.4e-128 464.2 472 53.8
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 1.3e-126 457.6 490 54.3
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 7.3e-122 441.8 467 50.5
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 7.0e-117 425.2 413 57.9
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 6.0e-116 422.2 451 53.2
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 8.9e-112 408.3 558 46.6
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 1.4e-88 331.3 298 57.7
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 9.0e-88 328.6 283 66.1
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 1.4e-85 321.2 437 44.2
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 7.8e-84 315.5 446 42.2
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 3.6e-81 306.6 402 48.8
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 3.6e-81 306.6 216 68.5
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 4.5e-79 299.7 376 48.1
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 2.3e-75 287.3 507 36.3
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 1.8e-72 277.7 233 67.4
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 3.3e-58 230.3 187 65.2
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 5.9e-55 219.5 157 68.2
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 8.8e-51 205.7 444 36.9
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 7.4e-50 202.6 267 46.4
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.8e-48 198.0 158 62.7
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.4e-45 188.3 245 45.7
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 1.9e-45 188.0 245 45.7
PGSC0003DMG400019058 Solanum tuberosum HOM05D004140 ORTHO05D006116 1.8e-43 181.4 116 76.7
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 8.5e-38 162.5 152 59.9
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 1.9e-37 161.4 140 61.4
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.2e-36 158.7 355 32.7
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.2e-36 158.7 147 60.5
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 8.0e-36 156.0 249 42.6
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.3e-35 154.5 104 75.0
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 5.2e-35 153.3 121 67.8
RcHm_v2.0_Chr3g0473711 Rosa chinensis HOM05D004140 ORTHO05D006116 6.7e-35 152.9 129 62.8
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.5e-34 151.8 240 42.1
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 2.6e-34 151.0 242 43.0
Cpa.g.sc5.18 Carica papaya HOM05D004140 ORTHO05D006116 7.4e-34 149.4 97 78.4
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 7.0e-32 142.9 100 67.0
DCAR_013386 Daucus carota HOM05D004140 ORTHO05D006116 2.6e-31 141.0 116 62.1
SEGI_36218 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 7.5e-26 122.9 96 63.5
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 1.4e-24 118.6 79 75.9
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 2.4e-24 117.9 105 59.0
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 3.8e-22 110.5 220 36.4
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 5.0e-22 110.2 220 36.4
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 1.9e-21 108.2 138 54.3
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 4.7e-20 103.6 240 33.3
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 1.0e-19 102.4 84 66.7
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 2.6e-18 97.8 137 48.9
SHI23815 Sapria himalayana HOM05D004140 ORTHO05D006116 3.5e-15 87.4 94 45.7
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 4.5e-15 87.0 153 33.3
arahy.Tifrunner.gnm1.ann1.LXEN71 Arachis hypogaea HOM05D000344 ORTHO05D005296 1.7e-14 85.1 102 46.1
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 5.0e-14 83.6 92 51.1
arahy.Tifrunner.gnm1.ann1.2FV8W6 Arachis hypogaea HOM05D000344 ORTHO05D005296 1.5e-13 82.0 63 60.3
FvH4_6g18751 Fragaria vesca HOM05D004140 ORTHO05D018624 3.6e-12 77.4 69 60.9
FAN05G4745 Fragaria x ananassa HOM05D000532 ORTHO05D002414 8.3e-09 66.2 249 27.3
C02p01230 Brassica napus HOM05D004140 ORTHO05D024608 9.2e-08 62.8 39 69.2
C02p01370 Brassica napus HOM05D004140 ORTHO05D024608 9.2e-08 62.8 39 69.2
C02p01440 Brassica napus HOM05D004140 ORTHO05D024608 9.2e-08 62.8 39 69.2
BolC2t06113H Brassica oleracea HOM05D004140 ORTHO05D024608 9.2e-08 62.8 39 69.2
BcaC05g27055 Brassica carinata HOM05D004140 ORTHO05D018624 1.6e-07 62.0 37 81.1
C05p29120 Brassica napus HOM05D004140 ORTHO05D018624 1.6e-07 62.0 37 81.1
BolC5t31642H Brassica oleracea HOM05D004140 ORTHO05D018624 1.6e-07 62.0 37 81.1
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 2.3e-06 58.2 77 41.6
C02p01250 Brassica napus HOM05D004140 ORTHO05D010099 5.0e-06 57.0 43 69.8


User provided reference genes

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