Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold13G06715 Striga asiatica HOM05D006980 ORTHO05D008704 4.3e-161 572.0 487 100.0
MSTRG.19261 Avicennia marina HOM05D006980 ORTHO05D008704 1.2e-78 298.1 219 66.7
SalBow3G1904 Salvia bowleyana HOM05D006980 ORTHO05D008704 1.2e-78 298.1 218 67.9
Migut.J01034 Erythranthe guttata HOM05D006980 ORTHO05D008704 8.7e-77 292.0 218 65.6
Oeu056884.1 Olea europaea HOM05D006980 ORTHO05D008704 1.1e-63 248.4 181 65.2
Cc02_g28460 Coffea canephora HOM05D006980 ORTHO05D008704 8.2e-59 232.3 199 57.8
Medtr7g104640 Medicago truncatula HOM05D006980 ORTHO05D008704 1.1e-58 231.9 416 71.9
TPR.G19555 Trifolium pratense HOM05D006980 ORTHO05D008704 5.3e-58 229.6 423 69.5
Dinv21206 Davidia involucrata HOM05D006980 ORTHO05D008704 1.1e-52 211.8 215 52.1
Lsat_1_v5_gn_5_164841 Lactuca sativa HOM05D006980 ORTHO05D008704 8.2e-51 205.7 180 56.1
CAN.G137.42 Capsicum annuum HOM05D006980 ORTHO05D008704 1.1e-50 205.3 419 44.2
ECA248G2176 Erigeron canadensis HOM05D006980 ORTHO05D008704 1.4e-50 204.9 218 50.0
CSS0041599 Camellia sinensis var. sinensis HOM05D006980 ORTHO05D008704 2.4e-50 204.1 228 49.6
Sc02g0000270 Simmondsia chinensis HOM05D006980 ORTHO05D008704 3.1e-50 203.8 200 52.5
CAN.G2030.1 Capsicum annuum HOM05D006980 ORTHO05D008704 4.1e-50 203.4 156 59.6
Cfa016610 Carpinus fangiana HOM05D006980 ORTHO05D008704 6.9e-50 202.6 222 50.0
Nitab4.5_0003259g0020 Nicotiana tabacum HOM05D006980 ORTHO05D008704 6.9e-50 202.6 199 52.3
Nitab4.5_0000025g0100 Nicotiana tabacum HOM05D006980 ORTHO05D008704 9.0e-50 202.2 199 52.8
Ah.02g130100 Amaranthus hybridus HOM05D006980 ORTHO05D008704 2.0e-49 201.1 219 47.9
Prupe.7G109800 Prunus persica HOM05D006980 ORTHO05D008704 2.6e-49 200.7 201 49.8
QL07p038724 Quercus lobata HOM05D006980 ORTHO05D008704 2.6e-49 200.7 152 59.2
SGA_v2.0_scaffold32G13171 Striga asiatica HOM05D006980 ORTHO05D008704 2.6e-49 200.7 496 43.3
CARHR130480 Cardamine hirsuta HOM05D006980 ORTHO05D008704 3.4e-49 200.3 483 63.4
Peaxi162Scf00045g00156 Petunia axillaris HOM05D006980 ORTHO05D008704 3.4e-49 200.3 180 53.9
Actinidia05428 Actinidia chinensis HOM05D006980 ORTHO05D008704 7.6e-49 199.1 222 48.6
HanXRQChr02g0032651 Helianthus annuus HOM05D006980 ORTHO05D008704 7.6e-49 199.1 190 53.2
Solyc08g006170.1 Solanum lycopersicum HOM05D006980 ORTHO05D008704 1.0e-48 198.7 213 50.2
PGSC0003DMG401009543 Solanum tuberosum HOM05D006980 ORTHO05D008704 2.9e-48 197.2 215 47.9
Lj2P137T25 Lonicera japonica HOM05D006980 ORTHO05D008704 5.0e-48 196.4 148 61.5
Sopen08g002140 Solanum pennellii HOM05D006980 ORTHO05D008704 6.5e-48 196.1 213 48.4
EL10Ac6g13708 Beta vulgaris HOM05D006980 ORTHO05D008704 1.1e-47 195.3 216 47.2
FAN05G0999 Fragaria x ananassa HOM05D006980 ORTHO05D008704 1.1e-47 195.3 203 49.3
Cc00_g27900 Coffea canephora HOM05D006980 ORTHO05D008704 2.5e-47 194.1 199 52.8
Atru.chr8.1533 Acer truncatum HOM05D006980 ORTHO05D008704 4.2e-47 193.4 154 56.5
CiPaw.09G014400 Carya illinoinensis HOM05D006980 ORTHO05D008704 4.2e-47 193.4 200 49.5
THA.LOC104804920 Tarenaya hassleriana HOM05D006980 ORTHO05D008704 4.2e-47 193.4 153 58.2
Rhsim03G0075000 Rhododendron simsii HOM05D006980 ORTHO05D008704 5.5e-47 193.0 223 47.1
RcHm_v2.0_Chr3g0473791 Rosa chinensis HOM05D006980 ORTHO05D008704 7.2e-47 192.6 200 50.0
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 7.2e-47 192.6 205 53.2
Aqoxy2G01180 Aquilegia oxysepala HOM05D006980 ORTHO05D008704 1.8e-45 188.0 226 46.0
Manes.09G055100 Manihot esculenta HOM05D006980 ORTHO05D008704 1.8e-45 188.0 155 54.2
PSO541G2622 Papaver somniferum HOM05D006980 ORTHO05D008704 2.3e-45 187.6 182 49.5
Ciclev10011570m.g Citrus clementina HOM05D006980 ORTHO05D008704 3.0e-45 187.2 220 44.1
QL07p038975 Quercus lobata HOM05D006980 ORTHO05D008704 5.1e-45 186.4 152 55.3
Thecc.05G089500 Theobroma cacao HOM05D006980 ORTHO05D008704 5.1e-45 186.4 222 45.0
arahy.Tifrunner.gnm1.ann1.3P0NFT Arachis hypogaea HOM05D006980 ORTHO05D008704 6.7e-45 186.0 152 54.6
Potri.006G068700 Populus trichocarpa HOM05D006980 ORTHO05D008704 6.7e-45 186.0 170 48.2
TWI77G0642 Tripterygium wilfordii HOM05D006980 ORTHO05D008704 8.8e-45 185.7 213 44.6
arahy.Tifrunner.gnm1.ann1.IK7M5W Arachis hypogaea HOM05D006980 ORTHO05D008704 1.9e-44 184.5 152 53.9
ClCG06G001250 Citrullus lanatus HOM05D006980 ORTHO05D008704 2.5e-44 184.1 142 54.9
COL.COLO4_29731 Corchorus olitorius HOM05D006980 ORTHO05D008704 3.3e-44 183.7 217 45.6
Aa31LG5G21360 Aethionema arabicum HOM05D006980 ORTHO05D008704 4.3e-44 183.3 202 47.5
AL4G32340 Arabidopsis lyrata HOM05D006980 ORTHO05D008704 4.3e-44 183.3 209 45.0
BcaB02g09370 Brassica carinata HOM05D006980 ORTHO05D008704 4.3e-44 183.3 153 53.6
BcaC02g11726 Brassica carinata HOM05D006980 ORTHO05D008704 4.3e-44 183.3 153 53.6
BcaC02g11728 Brassica carinata HOM05D006980 ORTHO05D008704 4.3e-44 183.3 153 53.6
Cpa.g.sc166.4 Carica papaya HOM05D006980 ORTHO05D008704 7.4e-44 182.6 199 47.7
PGR142G3286 Punica granatum HOM05D006980 ORTHO05D008704 7.4e-44 182.6 211 46.4
Sp4g18460 Schrenkiella parvula HOM05D006980 ORTHO05D008704 7.4e-44 182.6 209 45.9
PSO675G7214 Papaver somniferum HOM05D006980 ORTHO05D008704 9.7e-44 182.2 181 48.6
AUR62014076 Chenopodium quinoa HOM05D006980 ORTHO05D008704 1.7e-43 181.4 144 55.6
TAR633G1277 Trochodendron aralioides HOM05D006980 ORTHO05D008704 3.7e-43 180.3 219 44.3
AT2G36240 Arabidopsis thaliana HOM05D006980 ORTHO05D008704 4.8e-43 179.9 198 45.5
CANSAT64G1568 Cannabis sativa HOM05D006980 ORTHO05D008704 4.8e-43 179.9 221 43.9
AUR62005415 Chenopodium quinoa HOM05D006980 ORTHO05D008704 4.8e-43 179.9 200 47.0
MELO3C022409.2 Cucumis melo HOM05D006980 ORTHO05D008704 4.8e-43 179.9 232 44.0
Lj1g0023344 Lotus japonicus HOM05D006980 ORTHO05D008704 4.8e-43 179.9 206 46.1
Eucgr.G00971 Eucalyptus grandis HOM05D006980 ORTHO05D008704 6.3e-43 179.5 214 43.9
Eucgr.G00972 Eucalyptus grandis HOM05D006980 ORTHO05D008704 1.4e-42 178.3 485 32.6
Ca_09007_v3 Cicer arietinum L. HOM05D006980 ORTHO05D008704 2.4e-42 177.6 367 73.6
CsaV3_6G007180 Cucumis sativus L. HOM05D006980 ORTHO05D008704 2.4e-42 177.6 216 44.9
Sed0006527 Sechium edule HOM05D006980 ORTHO05D008704 9.1e-42 175.6 213 44.6
C04p11900 Brassica napus HOM05D006980 ORTHO05D008704 3.4e-41 173.7 154 53.2
BcaC02g11732 Brassica carinata HOM05D006980 ORTHO05D008704 5.0e-40 169.9 204 44.6
BolC4t22838H Brassica oleracea HOM05D006980 ORTHO05D008704 5.0e-40 169.9 204 44.6
BcaC02g11731 Brassica carinata HOM05D006980 ORTHO05D008704 8.5e-40 169.1 140 53.6
BraA05t19913Z Brassica rapa HOM05D006980 ORTHO05D008704 5.5e-39 166.4 201 44.8
HPP92_011900 Vanilla planifolia HOM05D006980 ORTHO05D008704 7.2e-39 166.0 190 47.4
Psat3g033240 Pisum sativum HOM05D006980 ORTHO05D008704 1.2e-38 165.2 367 68.1
BcaB02g09372 Brassica carinata HOM05D006980 ORTHO05D008704 1.6e-38 164.9 205 44.4
A05p09600 Brassica napus HOM05D006980 ORTHO05D008704 1.6e-38 164.9 201 44.3
Gorai.009G402600 Gossypium raimondii HOM05D006980 ORTHO05D008704 2.7e-38 164.1 132 54.5
SHI12421 Sapria himalayana HOM05D006980 ORTHO05D008704 2.7e-38 164.1 155 48.4
ATR0051G062 Amborella trichopoda HOM05D006980 ORTHO05D008704 3.6e-38 163.7 149 49.0
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 3.0e-37 160.6 193 41.5
Lalb_Chr20g0111701 Lupinus albus HOM05D006980 ORTHO05D008704 2.0e-36 157.9 194 44.8
Duzib106G0372 Durio zibethinus HOM05D006980 ORTHO05D008704 4.4e-36 156.8 216 41.2
GSVIVG01029738001 Vitis vinifera HOM05D006980 ORTHO05D008704 9.7e-36 155.6 219 41.6
Nn6g34894 Nelumbo nucifera HOM05D006980 ORTHO05D008704 4.8e-35 153.3 155 49.0
Glyma.03G196000 Glycine max HOM05D006980 ORTHO05D008704 4.5e-33 146.7 141 53.9
FAN02G3599 Fragaria x ananassa HOM05D006980 ORTHO05D008704 6.1e-30 136.3 107 57.9
VMungo1383G3509 Vigna mungo HOM05D006980 ORTHO05D008704 6.1e-30 136.3 165 44.2
Haze_19614 Corylus avellana HOM05D006980 ORTHO05D008704 3.9e-29 133.7 107 56.1
GSVIVG01015930001 Vitis vinifera HOM05D006980 ORTHO05D008704 3.9e-29 133.7 193 40.9
Phvul.001G190300 Phaseolus vulgaris HOM05D006980 ORTHO05D008704 5.2e-29 133.3 188 42.0
Thhalv10016603m.g Eutrema salsugineum HOM05D006980 ORTHO05D008704 6.7e-29 132.9 169 40.8
Sabra06G0051200 Salix brachista HOM05D006980 ORTHO05D008704 9.7e-28 129.0 107 50.5
SEGI_13947 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 1.3e-27 128.6 193 37.3
SEGI_40503 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 1.3e-27 128.6 193 37.3
DCAR_013476 Daucus carota HOM05D006980 ORTHO05D008704 2.2e-27 127.9 87 64.4
Eucgr.G00976 Eucalyptus grandis HOM05D006980 ORTHO05D008704 7.7e-25 119.4 498 24.3
Zm00001eb365120 Zea mays HOM05D006980 ORTHO05D008704 1.2e-22 112.1 419 48.4
arahy.Tifrunner.gnm1.ann1.FQN2WV Arachis hypogaea HOM05D006980 ORTHO05D008704 1.4e-21 108.6 81 60.5
Os01g0908800 Oryza sativa ssp. japonica HOM05D006980 ORTHO05D008704 1.2e-20 105.5 417 24.2
Oeu029122.1 Olea europaea HOM05D006980 ORTHO05D008704 1.3e-16 92.0 72 55.6
Zm00001eb423490 Zea mays HOM05D006980 ORTHO05D008704 7.2e-15 86.3 93 41.9
Zm00001eb434620 Zea mays HOM05D006980 ORTHO05D008704 1.2e-14 85.5 93 40.9
FvH4_6g18780 Fragaria vesca HOM05D006980 ORTHO05D008704 1.2e-09 68.9 59 55.9
FAN05G0477 Fragaria x ananassa HOM05D006980 ORTHO05D008704 1.2e-09 68.9 57 57.9
SEGI_09666 Sequoiadendron giganteum HOM05D007402 ORTHO05D003673 1.7e-08 65.1 150 26.0
FAN14G4048 Fragaria x ananassa HOM05D006980 ORTHO05D008704 2.9e-08 64.3 55 56.4
Carub.0004s1800 Capsella rubella HOM05D006980 ORTHO05D008704 3.8e-08 63.9 53 50.9
Aqoxy3G03369 Aquilegia oxysepala HOM05D002453 ORTHO05D002107 4.7e-06 57.0 98 29.6


User provided reference genes

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