Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold13G06689 Striga asiatica HOM05D003580 ORTHO05D004441 0.0e+00 1755.7 892 100.0
Migut.J00662 Erythranthe guttata HOM05D003580 ORTHO05D004441 0.0e+00 1368.2 895 78.3
SGA_v2.0_scaffold31G12889 Striga asiatica HOM05D003580 ORTHO05D004441 0.0e+00 1350.5 880 80.2
MSTRG.19281 Avicennia marina HOM05D003580 ORTHO05D004441 0.0e+00 1332.8 894 75.6
SGA_v2.0_scaffold31G12887 Striga asiatica HOM05D003580 ORTHO05D004441 0.0e+00 1196.4 820 76.7
unitig_749.g14304 Utricularia gibba HOM05D003580 ORTHO05D004441 0.0e+00 1163.7 928 64.7
PGSC0003DMG400002624 Solanum tuberosum HOM05D003580 ORTHO05D004441 0.0e+00 1155.6 885 67.1
Sopen03g039520 Solanum pennellii HOM05D003580 ORTHO05D004441 0.0e+00 1155.2 883 67.3
Solyc03g120700.3 Solanum lycopersicum HOM05D003580 ORTHO05D004441 0.0e+00 1151.3 885 67.1
Cc06_g21420 Coffea canephora HOM05D003580 ORTHO05D004441 0.0e+00 1101.7 888 64.5
Oeu011931.1 Olea europaea HOM05D003580 ORTHO05D004441 0.0e+00 1090.5 880 64.8
Lj2A356T45 Lonicera japonica HOM05D003580 ORTHO05D004441 0.0e+00 1082.8 847 64.8
CAN.G438.18 Capsicum annuum HOM05D003580 ORTHO05D004441 1.2e-311 1072.8 826 66.3
Actinidia22096 Actinidia chinensis HOM05D003580 ORTHO05D004441 1.2e-310 1069.7 894 62.2
vmacro09152 Vaccinium macrocarpon HOM05D003580 ORTHO05D004441 1.1e-306 1056.6 892 61.5
HanXRQChr01g0024861 Helianthus annuus HOM05D003580 ORTHO05D004441 1.7e-304 1049.3 875 60.7
Rhsim04G0086300 Rhododendron simsii HOM05D003580 ORTHO05D004441 1.5e-300 1036.2 953 57.7
Ciclev10014110m.g Citrus clementina HOM05D003580 ORTHO05D004441 1.8e-298 1029.2 888 61.7
Lsat_1_v5_gn_1_58860 Lactuca sativa HOM05D003580 ORTHO05D004441 6.9e-298 1027.3 898 59.7
TAR633G0565 Trochodendron aralioides HOM05D003580 ORTHO05D004441 2.0e-297 1025.8 875 61.4
Actinidia30566 Actinidia chinensis HOM05D003580 ORTHO05D004441 3.4e-297 1025.0 895 60.4
TAR362G0544 Trochodendron aralioides HOM05D003580 ORTHO05D004441 5.9e-297 1024.2 888 61.5
Potri.010G177200 Populus trichocarpa HOM05D003580 ORTHO05D004441 9.3e-295 1016.9 897 59.2
HanXRQChr12g0356901 Helianthus annuus HOM05D003580 ORTHO05D004441 6.1e-294 1014.2 901 58.9
TWI53G0960 Tripterygium wilfordii HOM05D003580 ORTHO05D004441 1.8e-293 1012.7 891 59.8
Sabra10G0136200 Salix brachista HOM05D003580 ORTHO05D004441 3.0e-293 1011.9 897 58.9
ECA248G2481 Erigeron canadensis HOM05D003580 ORTHO05D004441 3.9e-293 1011.5 899 59.1
Potri.008G079700 Populus trichocarpa HOM05D003580 ORTHO05D004441 4.3e-292 1008.1 895 58.9
CiPaw.04G180400 Carya illinoinensis HOM05D003580 ORTHO05D004441 2.8e-291 1005.4 880 60.2
CSS0030366 Camellia sinensis var. sinensis HOM05D003580 ORTHO05D004441 4.8e-291 1004.6 877 61.1
DCAR_019887 Daucus carota HOM05D003580 ORTHO05D004441 6.3e-291 1004.2 907 59.3
Peaxi162Scf00076g00824 Petunia axillaris HOM05D003580 ORTHO05D004441 8.2e-291 1003.8 901 60.6
Oeu055491.1 Olea europaea HOM05D003580 ORTHO05D004441 1.7e-288 996.1 828 62.3
arahy.Tifrunner.gnm1.ann1.TPGZ8P Arachis hypogaea HOM05D003580 ORTHO05D004441 2.2e-288 995.7 888 58.9
arahy.Tifrunner.gnm1.ann1.U0AKQE Arachis hypogaea HOM05D003580 ORTHO05D004441 3.2e-287 991.9 888 58.6
Sc16g0010760 Simmondsia chinensis HOM05D003580 ORTHO05D004441 4.2e-287 991.5 895 59.1
QL01p005312 Quercus lobata HOM05D003580 ORTHO05D004441 5.5e-287 991.1 892 58.6
Manes.13G155600 Manihot esculenta HOM05D003580 ORTHO05D004441 1.6e-286 989.6 907 57.9
Haze_24513 Corylus avellana HOM05D003580 ORTHO05D004441 1.4e-285 986.5 879 59.5
Sabra08G0059400 Salix brachista HOM05D003580 ORTHO05D004441 3.0e-285 985.3 898 58.2
Cfa002307 Carpinus fangiana HOM05D003580 ORTHO05D004441 3.9e-285 984.9 879 59.4
COL.COLO4_02821 Corchorus olitorius HOM05D003580 ORTHO05D004441 8.8e-285 983.8 888 57.5
Lj5g0021899 Lotus japonicus HOM05D003580 ORTHO05D004441 2.0e-284 982.6 880 58.9
AL6G27200 Arabidopsis lyrata HOM05D003580 ORTHO05D004441 2.6e-284 982.2 911 56.4
C09p60740 Brassica napus HOM05D003580 ORTHO05D004441 3.3e-284 981.9 903 56.3
Gohir.A04G049300 Gossypium hirsutum HOM05D003580 ORTHO05D004441 3.3e-284 981.9 883 57.8
Gorai.009G355000 Gossypium raimondii HOM05D003580 ORTHO05D004441 3.3e-284 981.9 883 58.4
MELO3C008782.2 Cucumis melo HOM05D003580 ORTHO05D004441 5.7e-284 981.1 880 58.9
AT5G16300 Arabidopsis thaliana HOM05D003580 ORTHO05D004441 7.4e-284 980.7 908 56.1
CsaV3_2G009280 Cucumis sativus L. HOM05D003580 ORTHO05D004441 7.4e-284 980.7 880 58.8
BolC9t58909H Brassica oleracea HOM05D003580 ORTHO05D004441 1.3e-283 979.9 903 56.0
VMungo0720G1645 Vigna mungo HOM05D003580 ORTHO05D004441 3.7e-283 978.4 877 58.8
A03p07660 Brassica napus HOM05D003580 ORTHO05D004441 8.2e-283 977.2 886 57.7
Glyma.20G188500 Glycine max HOM05D003580 ORTHO05D004441 8.2e-283 977.2 877 59.4
Gorai.012G011900 Gossypium raimondii HOM05D003580 ORTHO05D004441 8.2e-283 977.2 884 58.0
Psat6g176280 Pisum sativum HOM05D003580 ORTHO05D004441 1.1e-282 976.9 876 59.1
GSVIVG01006267001 Vitis vinifera HOM05D003580 ORTHO05D004441 1.1e-282 976.9 877 59.2
Thhalv10012518m.g Eutrema salsugineum HOM05D003580 ORTHO05D004441 1.4e-282 976.5 886 56.9
Eucgr.G00871 Eucalyptus grandis HOM05D003580 ORTHO05D004441 3.1e-282 975.3 894 57.7
Nn5g28173 Nelumbo nucifera HOM05D003580 ORTHO05D004441 3.1e-282 975.3 877 59.6
THA.LOC104820933 Tarenaya hassleriana HOM05D003580 ORTHO05D004441 4.1e-282 974.9 909 55.8
Gohir.D04G010100 Gossypium hirsutum HOM05D003580 ORTHO05D004441 6.9e-282 974.2 884 57.7
BraA03t10094Z Brassica rapa HOM05D003580 ORTHO05D004441 9.1e-282 973.8 886 57.8
ClCG11G011150 Citrullus lanatus HOM05D003580 ORTHO05D004441 9.1e-282 973.8 880 57.8
Gohir.D05G331100 Gossypium hirsutum HOM05D003580 ORTHO05D004441 9.1e-282 973.8 883 58.0
Sp6g27860 Schrenkiella parvula HOM05D003580 ORTHO05D004441 1.5e-281 973.0 887 56.5
Gohir.A05G405500 Gossypium hirsutum HOM05D003580 ORTHO05D004441 2.0e-281 972.6 884 57.6
Nn1g09424 Nelumbo nucifera HOM05D003580 ORTHO05D004441 3.4e-281 971.8 896 57.7
Carub.0006s1449 Capsella rubella HOM05D003580 ORTHO05D004441 4.5e-281 971.5 909 55.6
Glyma.10G201900 Glycine max HOM05D003580 ORTHO05D004441 4.5e-281 971.5 877 58.8
Phvul.007G105200 Phaseolus vulgaris HOM05D003580 ORTHO05D004441 4.5e-281 971.5 877 59.1
Lalb_Chr21g0313231 Lupinus albus HOM05D003580 ORTHO05D004441 5.9e-281 971.1 880 57.8
Hund21939 Selenicereus undatus HOM05D003580 ORTHO05D004441 1.3e-280 969.9 902 57.2
BraA10t44342Z Brassica rapa HOM05D003580 ORTHO05D004441 2.2e-280 969.1 902 55.7
A10p22770 Brassica napus HOM05D003580 ORTHO05D004441 5.0e-280 968.0 902 55.4
Ca_10488_v3 Cicer arietinum L. HOM05D003580 ORTHO05D004441 4.2e-279 964.9 893 57.6
CANSAT64G0454 Cannabis sativa HOM05D003580 ORTHO05D004441 7.2e-279 964.1 878 58.2
Sed0022441 Sechium edule HOM05D003580 ORTHO05D004441 9.4e-279 963.8 881 56.9
C03p08900 Brassica napus HOM05D003580 ORTHO05D004441 2.7e-278 962.2 881 56.9
BolC3t13385H Brassica oleracea HOM05D003580 ORTHO05D004441 1.4e-277 959.9 881 56.8
PGR042G2902 Punica granatum HOM05D003580 ORTHO05D004441 1.4e-277 959.9 898 56.9
Lalb_Chr02g0151301 Lupinus albus HOM05D003580 ORTHO05D004441 3.0e-277 958.7 882 58.2
AUR62000253 Chenopodium quinoa HOM05D003580 ORTHO05D004441 6.7e-277 957.6 900 57.1
Dinv20243 Davidia involucrata HOM05D003580 ORTHO05D004441 6.7e-277 957.6 894 58.4
BcaB01g04993 Brassica carinata HOM05D003580 ORTHO05D004441 2.6e-276 955.7 879 56.1
Sed0017385 Sechium edule HOM05D003580 ORTHO05D004441 7.4e-276 954.1 886 56.7
EL10Ac4g10045 Beta vulgaris HOM05D003580 ORTHO05D004441 1.7e-275 953.0 902 57.3
CARHR197010 Cardamine hirsuta HOM05D003580 ORTHO05D004441 2.8e-275 952.2 890 55.5
MBI18_g04901_MAGBIO Magnolia biondii HOM05D003580 ORTHO05D004441 1.4e-274 949.9 896 55.4
Ah.04g159420 Amaranthus hybridus HOM05D003580 ORTHO05D004441 1.3e-272 943.3 917 55.4
Thecc.05G131900 Theobroma cacao HOM05D003580 ORTHO05D004441 4.7e-270 934.9 883 56.2
PSO675G0774 Papaver somniferum HOM05D003580 ORTHO05D004441 1.4e-269 933.3 889 57.3
PSO732G0238 Papaver somniferum HOM05D003580 ORTHO05D004441 6.3e-267 924.5 889 56.8
PSO063G3475 Papaver somniferum HOM05D003580 ORTHO05D004441 2.4e-266 922.5 903 56.1
Aqoxy6G00271 Aquilegia oxysepala HOM05D003580 ORTHO05D004441 3.1e-266 922.2 894 55.5
Medtr1g492710 Medicago truncatula HOM05D003580 ORTHO05D004441 9.1e-266 920.6 1037 50.5
Aa31LG11G13320 Aethionema arabicum HOM05D003580 ORTHO05D004441 3.5e-265 918.7 934 53.2
MD08G1237500 Malus domestica HOM05D003580 ORTHO05D004441 2.2e-264 916.0 878 56.3
MD15G1429400 Malus domestica HOM05D003580 ORTHO05D004441 3.2e-263 912.1 881 55.6
AUR62006600 Chenopodium quinoa HOM05D003580 ORTHO05D004441 1.3e-259 900.2 898 54.8
Prupe.1G575000 Prunus persica HOM05D003580 ORTHO05D004441 1.4e-258 896.7 880 55.5
RcHm_v2.0_Chr7g0220971 Rosa chinensis HOM05D003580 ORTHO05D004441 1.5e-255 886.7 901 53.2
FAN18G2191 Fragaria x ananassa HOM05D003580 ORTHO05D004441 1.5e-252 876.7 880 53.8
Duzib140G0001 Durio zibethinus HOM05D003580 ORTHO05D004441 4.4e-252 875.2 885 53.0
FvH4_5g28760 Fragaria vesca HOM05D003580 ORTHO05D004441 5.7e-252 874.8 880 53.8
FAN08G0025 Fragaria x ananassa HOM05D003580 ORTHO05D004441 1.8e-250 869.8 879 53.4
FAN13G3018 Fragaria x ananassa HOM05D003580 ORTHO05D004441 5.9e-249 864.8 879 53.7
FAN04G1111 Fragaria x ananassa HOM05D003580 ORTHO05D004441 5.6e-247 858.2 879 53.1
TPR.G2546 Trifolium pratense HOM05D003580 ORTHO05D004441 4.7e-246 855.1 890 52.9
Cpa.g.sc440.1 Carica papaya HOM05D003580 ORTHO05D004441 4.9e-235 818.5 739 57.9
ATR0743G251 Amborella trichopoda HOM05D003580 ORTHO05D004441 3.3e-231 805.8 897 48.8
HPP92_017521 Vanilla planifolia HOM05D003580 ORTHO05D004441 1.5e-223 780.4 903 48.8
CDE04G2219 Ceratophyllum demersum HOM05D003580 ORTHO05D004441 4.0e-221 772.3 828 49.6
Os01g0777000 Oryza sativa ssp. japonica HOM05D003580 ORTHO05D004441 9.2e-218 761.1 903 47.0
SEGI_21118 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.8e-214 749.6 906 45.6
Zm00001eb151630 Zea mays HOM05D003580 ORTHO05D004441 5.2e-213 745.3 919 46.6
Zm00001eb369950 Zea mays HOM05D003580 ORTHO05D004441 5.2e-213 745.3 911 46.2
SHI02481 Sapria himalayana HOM05D003580 ORTHO05D004441 1.9e-210 736.9 944 44.2
Nitab4.5_0000001g0420 Nicotiana tabacum HOM05D003580 ORTHO05D004441 1.3e-206 724.2 892 47.8
Nitab4.5_0000693g0020 Nicotiana tabacum HOM05D003580 ORTHO05D004441 4.8e-190 669.1 892 45.1
Dinv14589 Davidia involucrata HOM05D003580 ORTHO05D004441 9.7e-175 618.2 446 70.6
Atru.chr10.106 Acer truncatum HOM05D003580 ORTHO05D004441 1.8e-165 587.4 535 58.7
Mapoly0006s0304 Marchantia polymorpha HOM05D003580 ORTHO05D004441 4.1e-165 586.3 954 37.9
Cfa002308 Carpinus fangiana HOM05D003580 ORTHO05D004441 6.9e-165 585.5 521 59.9
Atru.chr10.124 Acer truncatum HOM05D003580 ORTHO05D004441 1.1e-159 568.2 523 57.9
SEGI_09994 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 9.1e-157 558.5 664 45.6
AagrBONN_evm.TU.Sc2ySwM_228.612 Anthoceros agrestis HOM05D003580 ORTHO05D004441 1.2e-156 558.1 951 37.0
Pp3c21_18130 Physcomitrium patens HOM05D003580 ORTHO05D004441 4.5e-156 556.2 924 36.6
SMO116G0219 Selaginella moellendorffii HOM05D003580 ORTHO05D004441 6.1e-145 519.2 902 36.5
Dinv14590 Davidia involucrata HOM05D003580 ORTHO05D004441 2.4e-125 454.1 415 58.8
Atru.chr10.123 Acer truncatum HOM05D003580 ORTHO05D004441 1.1e-117 428.7 363 63.4
Eucgr.A01176 Eucalyptus grandis HOM05D003580 ORTHO05D004441 2.8e-105 387.5 502 44.4
Atru.chr10.105 Acer truncatum HOM05D003580 ORTHO05D004441 5.4e-101 373.2 318 64.2
Pp3c18_6580 Physcomitrium patens HOM05D003580 ORTHO05D004441 4.9e-94 350.1 669 34.4
CBR_g38826 Chara braunii HOM05D000019 ORTHO05D000048 3.8e-86 323.9 903 28.0
SEGI_41100 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.4e-61 242.3 368 37.2
CDE02G3888 Ceratophyllum demersum HOM05D003580 ORTHO05D004441 1.0e-59 236.1 285 45.3
SEGI_02603 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.4e-56 225.7 390 36.2
SEGI_26119 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 3.8e-54 217.6 290 39.3
SEGI_02361 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 5.1e-51 207.2 225 48.4
Pp3c22_14630 Physcomitrium patens HOM05D003580 ORTHO05D004441 1.4e-48 199.1 841 24.9
SEGI_10162 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 5.0e-46 190.7 287 37.3
MCO16G457 Micromonas commoda HOM05D003580 ORTHO05D004441 4.4e-42 177.6 948 22.3
Cre14.g628050 Chlamydomonas reinhardtii HOM05D003580 ORTHO05D004441 5.7e-42 177.2 1091 22.1
SEGI_40357 Sequoiadendron giganteum HOM05D003580 ORTHO05D000003 8.2e-41 173.3 292 34.6
SEGI_20620 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 3.5e-39 167.9 168 47.6
FvH4_3g34230 Fragaria vesca HOM05D003580 ORTHO05D004441 2.9e-38 164.9 156 57.1
SEGI_17593 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 3.2e-37 161.4 159 46.5
SEGI_21703 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.0e-35 156.4 156 48.7
BcaNung02234 Brassica carinata HOM05D003580 ORTHO05D004441 2.3e-35 155.2 179 49.2
SEGI_22494 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 3.0e-35 154.8 136 52.2
QL01p051634 Quercus lobata HOM05D003580 ORTHO05D004441 2.6e-34 151.8 299 34.4
Actinidia22485 Actinidia chinensis HOM05D003580 ORTHO05D004441 5.7e-34 150.6 183 48.1
SEGI_10836 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 5.7e-34 150.6 270 33.3
SEGI_01451 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 7.5e-34 150.2 161 45.3
SEGI_12986 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.0e-31 142.1 140 49.3
TPR.G7717 Trifolium pratense HOM05D003580 ORTHO05D004441 1.3e-30 139.4 109 66.1
SGA_v2.0_scaffold1489G53965 Striga asiatica HOM05D003580 ORTHO05D004441 2.9e-30 138.3 93 78.5
SEGI_37648 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.2e-28 132.9 122 50.8
PRCOL_00004619 Prasinoderma coloniale HOM05D003580 ORTHO05D004441 3.6e-28 131.3 261 31.8
CBR_g38824 Chara braunii HOM05D003580 ORTHO05D000002 6.1e-28 130.6 175 44.6
SEGI_18317 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.6e-26 125.2 142 43.7
SEGI_24255 Sequoiadendron giganteum HOM05D000018 ORTHO05D003948 2.7e-23 115.2 119 44.5
SEGI_40013 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.3e-22 112.8 152 40.1
SEGI_23236 Sequoiadendron giganteum HOM05D003580 ORTHO05D000001 3.3e-21 108.2 124 43.5
SEGI_00259 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 5.5e-21 107.5 133 41.4
SEGI_37860 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.8e-20 105.1 119 42.9
SEGI_13143 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 8.0e-20 103.6 103 47.6
Cpa.g.c39794 Carica papaya HOM05D003580 ORTHO05D004441 4.4e-18 97.8 66 72.7
SEGI_32072 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 6.3e-17 94.0 89 49.4
QL01p051624 Quercus lobata HOM05D003580 ORTHO05D004441 1.1e-16 93.2 97 50.5
SEGI_07846 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.4e-16 92.8 114 43.0
SEGI_06299 Sequoiadendron giganteum HOM05D003580 ORTHO05D019257 1.6e-15 89.4 66 57.6
arahy.Tifrunner.gnm1.ann1.G7UC7Z Arachis hypogaea HOM05D003580 ORTHO05D004441 3.5e-15 88.2 93 50.5
arahy.Tifrunner.gnm1.ann1.0G6L2R Arachis hypogaea HOM05D003580 ORTHO05D004441 4.5e-15 87.8 99 47.5
SEGI_00546 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.3e-14 85.5 74 52.7
Actinidia35884 Actinidia chinensis HOM05D000084 ORTHO05D014724 2.8e-12 78.6 154 35.7
PSO063G6607 Papaver somniferum HOM05D003580 ORTHO05D004441 5.2e-11 74.3 95 47.4
VMungo1383G0656 Vigna mungo HOM05D003580 ORTHO05D004441 6.8e-11 73.9 51 72.5


User provided reference genes

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