Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold13G06633 Striga asiatica HOM05D006026 ORTHO05D007502 3.7e-51 204.5 100 100.0
SGA_v2.0_scaffold32G13334 Striga asiatica HOM05D006026 ORTHO05D007502 1.2e-25 119.8 87 71.3
Migut.B00021 Erythranthe guttata HOM05D006026 ORTHO05D007502 6.0e-25 117.5 87 69.0
Solyc01g112060.4 Solanum lycopersicum HOM05D006026 ORTHO05D007502 1.3e-24 116.3 85 71.8
Sopen01g054110 Solanum pennellii HOM05D006026 ORTHO05D007502 1.3e-24 116.3 85 71.8
PGSC0003DMG400018657 Solanum tuberosum HOM05D006026 ORTHO05D007502 1.3e-24 116.3 85 71.8
Thecc.02G047100 Theobroma cacao HOM05D006026 ORTHO05D007502 1.3e-24 116.3 72 80.6
EL10Ac9g21273 Beta vulgaris HOM05D006026 ORTHO05D007502 1.7e-24 115.9 72 77.8
CAN.G1235.18 Capsicum annuum HOM05D006026 ORTHO05D007502 1.7e-24 115.9 85 70.6
Nitab4.5_0000783g0230 Nicotiana tabacum HOM05D006026 ORTHO05D007502 1.7e-24 115.9 85 70.6
Nitab4.5_0009888g0010 Nicotiana tabacum HOM05D006026 ORTHO05D007502 1.7e-24 115.9 85 70.6
PGR042G3337 Punica granatum HOM05D006026 ORTHO05D007502 1.7e-24 115.9 72 79.2
AUR62012942 Chenopodium quinoa HOM05D006026 ORTHO05D007502 2.3e-24 115.5 72 77.8
AUR62027142 Chenopodium quinoa HOM05D006026 ORTHO05D007502 2.3e-24 115.5 72 77.8
AUR62029494 Chenopodium quinoa HOM05D006026 ORTHO05D007502 2.3e-24 115.5 72 77.8
Dinv41889 Davidia involucrata HOM05D006026 ORTHO05D007502 2.3e-24 115.5 72 79.2
ClCG00G000750 Citrullus lanatus HOM05D006026 ORTHO05D007502 3.0e-24 115.2 87 67.8
ClCG00G001730 Citrullus lanatus HOM05D006026 ORTHO05D007502 3.0e-24 115.2 87 67.8
MELO3C013632.2 Cucumis melo HOM05D006026 ORTHO05D007502 3.0e-24 115.2 87 67.8
CsaV3_6G012790 Cucumis sativus L. HOM05D006026 ORTHO05D007502 3.0e-24 115.2 87 67.8
Hma1.2p1_0271F.1_g109040 Hydrangea macrophylla HOM05D006026 ORTHO05D007502 3.0e-24 115.2 72 77.8
Hma1.2p1_0271F.1_g109050 Hydrangea macrophylla HOM05D006026 ORTHO05D007502 3.0e-24 115.2 72 77.8
Atru.chr5.3501 Acer truncatum HOM05D006026 ORTHO05D007502 5.1e-24 114.4 72 76.4
Sed0018198 Sechium edule HOM05D006026 ORTHO05D007502 5.1e-24 114.4 87 67.8
MSTRG.19950 Avicennia marina HOM05D006026 ORTHO05D007502 6.6e-24 114.0 87 66.7
ECA233G5240 Erigeron canadensis HOM05D006026 ORTHO05D007502 6.6e-24 114.0 72 77.8
Psat5g000600 Pisum sativum HOM05D006026 ORTHO05D007502 6.6e-24 114.0 87 69.0
CiPaw.05G090000 Carya illinoinensis HOM05D006026 ORTHO05D007502 8.7e-24 113.6 72 77.8
COL.COLO4_17947 Corchorus olitorius HOM05D006026 ORTHO05D007502 8.7e-24 113.6 72 77.8
Gohir.D02G230700 Gossypium hirsutum HOM05D006026 ORTHO05D007502 8.7e-24 113.6 72 76.4
Gorai.005G258300 Gossypium raimondii HOM05D006026 ORTHO05D007502 8.7e-24 113.6 72 76.4
Medtr3g118430 Medicago truncatula HOM05D006026 ORTHO05D007502 8.7e-24 113.6 87 67.8
TWI79G1086 Tripterygium wilfordii HOM05D006026 ORTHO05D007502 8.7e-24 113.6 72 77.8
unitig_748.g7335 Utricularia gibba HOM05D006026 ORTHO05D007502 8.7e-24 113.6 72 76.4
Actinidia18011 Actinidia chinensis HOM05D006026 ORTHO05D007502 1.1e-23 113.2 72 75.0
Actinidia20559 Actinidia chinensis HOM05D006026 ORTHO05D007502 1.1e-23 113.2 72 75.0
CANSAT25G3515 Cannabis sativa HOM05D006026 ORTHO05D007502 1.1e-23 113.2 72 75.0
Cpa.g.sc20.183 Carica papaya HOM05D006026 ORTHO05D007502 1.1e-23 113.2 72 77.8
Hund06172 Selenicereus undatus HOM05D006026 ORTHO05D007502 1.1e-23 113.2 72 77.8
THA.LOC104807393 Tarenaya hassleriana HOM05D006026 ORTHO05D007502 1.1e-23 113.2 72 77.8
TPR.G38515 Trifolium pratense HOM05D006026 ORTHO05D007502 1.1e-23 113.2 87 66.7
arahy.Tifrunner.gnm1.ann1.C9RI5X Arachis hypogaea HOM05D006026 ORTHO05D007502 1.5e-23 112.8 87 65.5
arahy.Tifrunner.gnm1.ann1.NGL2PI Arachis hypogaea HOM05D006026 ORTHO05D007502 1.5e-23 112.8 87 65.5
CSS0009314 Camellia sinensis var. sinensis HOM05D006026 ORTHO05D007502 1.5e-23 112.8 72 76.4
CSS0017921 Camellia sinensis var. sinensis HOM05D006026 ORTHO05D007502 1.5e-23 112.8 72 76.4
Haze_02040 Corylus avellana HOM05D006026 ORTHO05D007502 1.5e-23 112.8 72 76.4
Haze_02283 Corylus avellana HOM05D006026 ORTHO05D007502 1.5e-23 112.8 72 76.4
Glyma.06G001032 Glycine max HOM05D006026 ORTHO05D007502 1.5e-23 112.8 87 65.5
Manes.04G065300 Manihot esculenta HOM05D006026 ORTHO05D007502 1.5e-23 112.8 72 77.8
Peaxi162Scf00362g00257 Petunia axillaris HOM05D006026 ORTHO05D007502 1.5e-23 112.8 85 68.2
Sc14g0002380 Simmondsia chinensis HOM05D006026 ORTHO05D007502 1.5e-23 112.8 72 76.4
Cfa005337 Carpinus fangiana HOM05D006026 ORTHO05D007502 1.9e-23 112.5 72 73.6
FvH4_2g16360 Fragaria vesca HOM05D006026 ORTHO05D007502 1.9e-23 112.5 72 75.0
FAN15G0892 Fragaria x ananassa HOM05D006026 ORTHO05D007502 1.9e-23 112.5 72 75.0
FAN24G0545 Fragaria x ananassa HOM05D006026 ORTHO05D007502 1.9e-23 112.5 72 75.0
FAN24G2355 Fragaria x ananassa HOM05D006026 ORTHO05D007502 1.9e-23 112.5 72 75.0
FAN27G0355 Fragaria x ananassa HOM05D006026 ORTHO05D007502 1.9e-23 112.5 72 75.0
Gohir.A03G209000 Gossypium hirsutum HOM05D006026 ORTHO05D007502 1.9e-23 112.5 72 76.4
HanXRQChr02g0049421 Helianthus annuus HOM05D006026 ORTHO05D007502 1.9e-23 112.5 72 75.0
Glyma.04G001500 Glycine max HOM05D006026 ORTHO05D007502 2.5e-23 112.1 87 65.5
Prupe.8G176300 Prunus persica HOM05D006026 ORTHO05D007502 2.5e-23 112.1 72 73.6
Rhsim11G0196300 Rhododendron simsii HOM05D006026 ORTHO05D007502 2.5e-23 112.1 71 76.1
RcHm_v2.0_Chr6g0280111 Rosa chinensis HOM05D006026 ORTHO05D007502 2.5e-23 112.1 72 73.6
vmacro02320 Vaccinium macrocarpon HOM05D006026 ORTHO05D007502 2.5e-23 112.1 71 77.5
VMungo1309G0279 Vigna mungo HOM05D006026 ORTHO05D007502 2.5e-23 112.1 87 65.5
AT4G35250 Arabidopsis thaliana HOM05D006026 ORTHO05D007502 3.3e-23 111.7 72 75.0
Carub.0007s0505 Capsella rubella HOM05D006026 ORTHO05D007502 3.3e-23 111.7 72 75.0
Eucgr.G01834 Eucalyptus grandis HOM05D006026 ORTHO05D007502 3.3e-23 111.7 72 76.4
Sp7g33020 Schrenkiella parvula HOM05D006026 ORTHO05D007502 3.3e-23 111.7 72 75.0
BcaB03g11776 Brassica carinata HOM05D006026 ORTHO05D007502 4.3e-23 111.3 72 73.6
BcaC01g00829 Brassica carinata HOM05D006026 ORTHO05D007502 4.3e-23 111.3 72 73.6
A08p16240 Brassica napus HOM05D006026 ORTHO05D007502 4.3e-23 111.3 72 73.6
BraA08t33594Z Brassica rapa HOM05D006026 ORTHO05D007502 4.3e-23 111.3 72 73.6
MD05G1131800 Malus domestica HOM05D006026 ORTHO05D007502 4.3e-23 111.3 72 72.2
Potri.009G143000 Populus trichocarpa HOM05D006026 ORTHO05D007502 4.3e-23 111.3 72 77.8
AL7G15930 Arabidopsis lyrata HOM05D006026 ORTHO05D007502 5.6e-23 110.9 72 75.0
C03p84930 Brassica napus HOM05D006026 ORTHO05D007502 5.6e-23 110.9 72 73.6
BolC3t20785H Brassica oleracea HOM05D006026 ORTHO05D007502 5.6e-23 110.9 72 73.6
Lj5A173T64 Lonicera japonica HOM05D006026 ORTHO05D007502 5.6e-23 110.9 72 75.0
Lj1g0012573 Lotus japonicus HOM05D006026 ORTHO05D007502 5.6e-23 110.9 87 66.7
Potri.004G183100 Populus trichocarpa HOM05D006026 ORTHO05D007502 5.6e-23 110.9 72 76.4
Aa31LG2G14780 Aethionema arabicum HOM05D006026 ORTHO05D007502 7.3e-23 110.5 72 73.6
CARHR243570 Cardamine hirsuta HOM05D006026 ORTHO05D007502 7.3e-23 110.5 72 73.6
QL11p054672 Quercus lobata HOM05D006026 ORTHO05D007502 7.3e-23 110.5 72 76.4
Sabra09G0110800 Salix brachista HOM05D006026 ORTHO05D007502 7.3e-23 110.5 72 76.4
Lsat_1_v5_gn_8_120201 Lactuca sativa HOM05D006026 ORTHO05D007502 9.6e-23 110.2 72 73.6
MBI08_g19978_MAGBIO Magnolia biondii HOM05D006026 ORTHO05D007502 9.6e-23 110.2 72 76.4
Phvul.009G116200 Phaseolus vulgaris HOM05D006026 ORTHO05D007502 9.6e-23 110.2 87 64.4
Ciclev10028591m.g Citrus clementina HOM05D006026 ORTHO05D007502 1.6e-22 109.4 87 64.4
PSO675G4706 Papaver somniferum HOM05D006026 ORTHO05D007502 1.6e-22 109.4 87 65.5
Hund00343 Selenicereus undatus HOM05D006026 ORTHO05D007502 1.6e-22 109.4 72 70.8
GSVIVG01023933001 Vitis vinifera HOM05D006026 ORTHO05D007502 1.6e-22 109.4 71 77.5
ATR0661G296 Amborella trichopoda HOM05D006026 ORTHO05D007502 2.1e-22 109.0 72 73.6
DCAR_015673 Daucus carota HOM05D006026 ORTHO05D007502 2.1e-22 109.0 72 73.6
Sabra04G0123100 Salix brachista HOM05D006026 ORTHO05D007502 2.1e-22 109.0 72 75.0
Cc09_g10590 Coffea canephora HOM05D006026 ORTHO05D007502 4.8e-22 107.8 67 82.1
Thhalv10025389m.g Eutrema salsugineum HOM05D006026 ORTHO05D007502 4.8e-22 107.8 72 70.8
Lalb_Chr08g0246801 Lupinus albus HOM05D006026 ORTHO05D007502 4.8e-22 107.8 73 75.3
Os08g0553800 Oryza sativa ssp. japonica HOM05D006026 ORTHO05D007502 4.8e-22 107.8 85 65.9
PSO541G6277 Papaver somniferum HOM05D006026 ORTHO05D007502 4.8e-22 107.8 87 64.4
TAR376G0854 Trochodendron aralioides HOM05D006026 ORTHO05D007502 4.8e-22 107.8 72 75.0
Zm00001eb039850 Zea mays HOM05D006026 ORTHO05D007502 8.1e-22 107.1 72 70.8
Nn6g31746 Nelumbo nucifera HOM05D006026 ORTHO05D007502 1.4e-21 106.3 72 73.6
QL11p054687 Quercus lobata HOM05D006026 ORTHO05D007502 2.4e-21 105.5 72 73.6
Aqoxy6G01749 Aquilegia oxysepala HOM05D006026 ORTHO05D007502 3.1e-21 105.1 72 73.6
CDE05G1234 Ceratophyllum demersum HOM05D006026 ORTHO05D007502 3.1e-21 105.1 72 72.2
CDE05G3682 Ceratophyllum demersum HOM05D006026 ORTHO05D007502 3.1e-21 105.1 81 69.1
HPP92_025949 Vanilla planifolia HOM05D006026 ORTHO05D007502 6.9e-21 104.0 72 70.8
Mapoly0013s0111 Marchantia polymorpha HOM05D006026 ORTHO05D007502 1.7e-19 99.4 72 68.1
SMO011G0028 Selaginella moellendorffii HOM05D006026 ORTHO05D007502 1.4e-18 96.3 81 59.3
CBR_g37527 Chara braunii HOM05D006026 ORTHO05D007502 7.1e-18 94.0 72 63.9
Pp3c27_8140 Physcomitrium patens HOM05D006026 ORTHO05D007502 7.1e-18 94.0 81 59.3
AagrBONN_evm.TU.Sc2ySwM_228.3661 Anthoceros agrestis HOM05D006026 ORTHO05D007502 1.6e-17 92.8 72 62.5
AUR62027145 Chenopodium quinoa HOM05D006026 ORTHO05D007502 1.8e-13 79.3 62 62.9
MD10G1137300 Malus domestica HOM05D006026 ORTHO05D007502 2.6e-12 75.5 105 44.8
MD10G1136300 Malus domestica HOM05D006026 ORTHO05D007502 3.4e-12 75.1 91 50.5
PRCOL_00003008 Prasinoderma coloniale HOM05D006026 ORTHO05D007502 2.2e-11 72.4 71 45.1
Cre02.g142146 Chlamydomonas reinhardtii HOM05D006026 ORTHO05D007502 2.9e-11 72.0 70 47.1
MCO09G679 Micromonas commoda HOM05D006026 ORTHO05D007502 2.5e-10 68.9 71 42.3
SGA_v2.0_scaffold7G03591 Striga asiatica HOM05D006026 ORTHO05D007502 1.9e-07 59.3 35 82.9


User provided reference genes

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