Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 0.0e+00 1966.8 1009 100.0
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 0.0e+00 1140.9 948 64.9
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 4.3e-304 1048.1 955 61.0
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 7.3e-304 1047.3 945 60.5
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 2.1e-258 896.3 927 53.2
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 6.7e-249 864.8 947 51.7
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 2.6e-248 862.8 945 51.1
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 2.4e-246 856.3 950 51.5
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 1.2e-245 854.0 951 51.3
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 3.2e-243 845.9 949 51.2
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 7.2e-243 844.7 949 50.5
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 3.0e-241 839.3 925 50.7
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 1.5e-240 837.0 948 50.9
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 9.7e-240 834.3 986 49.2
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 9.7e-240 834.3 945 49.9
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 2.8e-239 832.8 956 50.6
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 3.1e-238 829.3 945 50.1
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 3.1e-238 829.3 815 55.2
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 4.1e-238 828.9 944 51.0
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 5.2e-233 812.0 947 49.0
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 1.4e-230 803.9 947 48.5
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 9.1e-230 801.2 945 48.3
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 2.0e-229 800.0 949 50.4
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 1.0e-228 797.7 947 48.9
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 1.7e-228 797.0 936 50.7
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 1.1e-227 794.3 953 48.3
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.5e-227 793.9 948 47.9
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 1.9e-227 793.5 947 47.9
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 4.2e-227 792.3 958 47.2
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 5.5e-227 792.0 949 50.1
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 2.3e-225 786.6 942 48.3
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 1.5e-224 783.9 951 48.1
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 5.4e-222 775.4 950 48.2
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 2.7e-221 773.1 946 46.9
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 2.9e-220 769.6 947 47.2
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 5.0e-220 768.8 947 47.2
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 6.5e-220 768.5 947 47.1
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.1e-218 763.5 957 46.7
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 6.8e-217 758.4 951 47.5
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.6e-216 756.5 957 46.3
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 4.1e-214 749.2 920 48.9
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 1.7e-212 743.8 963 45.4
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 3.8e-212 742.7 958 46.1
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 8.9e-209 731.5 946 44.4
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 1.7e-207 727.2 909 45.3
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 3.7e-207 726.1 811 50.9
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 2.4e-206 723.4 1006 44.5
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 7.8e-205 718.4 947 45.1
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 3.9e-204 716.1 950 45.1
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 6.6e-204 715.3 664 58.7
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 1.5e-203 714.1 951 44.8
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 3.6e-202 709.5 954 44.9
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 1.4e-201 707.6 952 44.7
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 1.4e-201 707.6 952 44.1
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 2.0e-200 703.7 952 44.3
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 1.2e-194 684.5 951 44.6
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 2.8e-194 683.3 949 44.0
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 3.6e-194 682.9 897 45.4
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 4.7e-194 682.6 928 46.0
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 2.3e-193 680.2 1003 43.0
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 1.2e-192 677.9 991 43.0
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 1.5e-192 677.6 955 44.0
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 1.7e-191 674.1 951 43.4
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 2.7e-189 666.8 932 42.8
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 2.5e-187 660.2 909 44.3
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 5.6e-187 659.1 939 42.5
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 7.3e-187 658.7 951 40.9
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 2.1e-186 657.1 958 43.0
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 3.1e-185 653.3 964 42.0
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 2.6e-184 650.2 949 40.5
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 2.9e-183 646.7 763 47.7
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 3.5e-181 639.8 955 40.3
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 3.0e-180 636.7 950 41.9
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 8.6e-180 635.2 951 40.8
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 9.6e-179 631.7 970 39.8
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.4e-177 627.9 922 41.9
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 1.8e-177 627.5 946 40.7
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 1.2e-176 624.8 763 46.4
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 1.9e-174 617.5 953 40.2
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 5.4e-174 615.9 799 46.3
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 7.1e-174 615.5 953 41.1
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 9.3e-174 615.1 953 40.0
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 9.3e-174 615.1 953 40.1
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 2.7e-173 613.6 953 40.0
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 2.7e-173 613.6 949 39.4
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 7.8e-173 612.1 955 39.5
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 7.8e-173 612.1 934 41.2
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 6.6e-172 609.0 946 40.0
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 1.3e-170 604.7 957 39.5
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 3.1e-169 600.1 872 41.6
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 4.0e-169 599.7 943 39.3
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 1.2e-165 588.2 952 39.1
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 4.6e-165 586.3 939 38.9
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 3.9e-164 583.2 684 49.4
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 5.1e-164 582.8 924 40.6
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 1.2e-160 571.6 785 43.8
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 6.4e-159 565.8 930 38.7
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 8.4e-159 565.5 951 37.6
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 9.3e-158 562.0 798 42.2
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 2.4e-153 547.4 718 45.1
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.4e-145 520.8 955 36.8
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 3.8e-143 513.5 662 44.4
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 6.1e-141 506.1 679 44.0
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 5.1e-140 503.1 714 41.9
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 2.6e-136 490.7 921 35.9
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 3.8e-135 486.9 772 40.8
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 1.5e-128 464.9 818 39.9
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 1.1e-121 442.2 633 42.8
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 4.5e-112 410.2 846 33.3
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 5.5e-110 403.3 818 34.1
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 1.6e-109 401.7 955 31.2
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 1.2e-107 395.6 573 41.9
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 1.2e-101 375.6 962 31.7
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 2.0e-99 368.2 290 66.6
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 5.7e-99 366.7 274 73.0
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.6e-93 348.6 260 70.0
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 2.2e-90 338.2 725 32.8
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.7e-82 312.0 583 33.8
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 4.1e-81 307.4 192 80.7
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.7e-80 304.7 261 61.7
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 2.3e-76 291.6 981 27.4
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 2.3e-76 291.6 981 27.4
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 2.0e-75 288.5 208 70.2
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 6.4e-74 283.5 837 29.0
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 1.5e-67 262.3 443 38.8
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 5.4e-65 253.8 215 60.9
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 6.0e-64 250.4 219 61.6
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 1.1e-60 239.6 890 27.4
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 6.9e-60 236.9 275 52.0
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 1.5e-59 235.7 532 32.1
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 3.8e-58 231.1 190 60.0
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 1.4e-57 229.2 375 37.9
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 6.0e-56 223.8 796 25.4
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 7.8e-56 223.4 195 56.9
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 7.6e-51 206.8 139 76.3
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 2.1e-48 198.7 685 26.7
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 4.8e-45 187.6 364 34.9
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 2.0e-43 182.2 369 32.8
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 5.8e-43 180.6 143 65.0
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 1.4e-41 176.0 191 49.7
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.0e-39 169.9 227 41.0
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 3.9e-39 167.9 109 74.3
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 8.7e-39 166.8 242 39.3
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 9.6e-38 163.3 209 42.1
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 4.0e-36 157.9 122 61.5
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 2.6e-35 155.2 249 37.8
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 4.9e-34 151.0 178 44.4
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 3.2e-33 148.3 231 39.0
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 2.8e-29 135.2 84 81.0
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 1.2e-24 119.8 91 71.4
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 9.7e-22 110.2 404 27.0
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 9.7e-22 110.2 100 58.0
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 6.3e-21 107.5 165 37.0
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 4.5e-19 101.3 183 33.9
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 7.7e-19 100.5 143 44.8
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 7.7e-19 100.5 144 44.4
BraA05t20915Z Brassica rapa HOM05D000848 ORTHO05D000007 1.5e-11 76.3 100 37.0
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 6.5e-10 70.9 50 68.0
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 1.1e-09 70.1 228 25.4
SGA_v2.0_scaffold158G37464 Striga asiatica HOM05D000246 ORTHO05D009140 2.3e-07 62.4 46 67.4
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 1.5e-06 59.7 210 24.3


User provided reference genes

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