Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold13G06588 Striga asiatica HOM05D002458 ORTHO05D002603 1.2e-77 293.1 144 100.0
Migut.B00340 Erythranthe guttata HOM05D002458 ORTHO05D002603 3.0e-17 92.4 137 46.0
Nitab4.5_0002543g0060 Nicotiana tabacum HOM05D002458 ORTHO05D002603 4.3e-16 88.6 132 43.9
Nitab4.5_0007480g0020 Nicotiana tabacum HOM05D002458 ORTHO05D002603 5.6e-16 88.2 132 43.9
MSTRG.20151 Avicennia marina HOM05D002458 ORTHO05D002603 7.3e-16 87.8 119 47.9
unitig_61.g26001 Utricularia gibba HOM05D002458 ORTHO05D002603 1.6e-15 86.7 137 42.3
Migut.N01190 Erythranthe guttata HOM05D002458 ORTHO05D002603 2.1e-15 86.3 143 44.8
SalBow3G3738 Salvia bowleyana HOM05D002458 ORTHO05D002603 6.2e-15 84.7 142 43.7
Dinv42151 Davidia involucrata HOM05D002458 ORTHO05D002603 2.4e-14 82.8 132 45.5
Oeu013702.1 Olea europaea HOM05D002458 ORTHO05D002603 2.4e-14 82.8 139 46.8
HanXRQChr16g0515091 Helianthus annuus HOM05D002458 ORTHO05D002603 6.9e-14 81.3 132 40.2
Sed0018653 Sechium edule HOM05D002458 ORTHO05D002603 9.0e-14 80.9 118 44.1
MELO3C019512.2 Cucumis melo HOM05D002458 ORTHO05D002603 2.6e-13 79.3 111 42.3
CsaV3_3G018550 Cucumis sativus L. HOM05D002458 ORTHO05D002603 2.6e-13 79.3 124 40.3
Peaxi162Scf00003g02325 Petunia axillaris HOM05D002458 ORTHO05D002603 2.6e-13 79.3 135 43.0
SalBow6G2746 Salvia bowleyana HOM05D002458 ORTHO05D002603 3.4e-13 79.0 136 41.2
CiPaw.05G051800 Carya illinoinensis HOM05D002458 ORTHO05D002603 7.6e-13 77.8 129 43.4
Dinv23616 Davidia involucrata HOM05D002458 ORTHO05D002603 9.9e-13 77.4 122 42.6
Cc02_g18710 Coffea canephora HOM05D002458 ORTHO05D002603 1.3e-12 77.0 132 43.9
Haze_01829 Corylus avellana HOM05D002458 ORTHO05D002603 1.3e-12 77.0 110 44.5
Hma1.2p1_0370F.1_g137860 Hydrangea macrophylla HOM05D002458 ORTHO05D002603 1.7e-12 76.6 109 49.5
Actinidia00445 Actinidia chinensis HOM05D002458 ORTHO05D002603 2.2e-12 76.3 123 43.1
Phvul.003G293000 Phaseolus vulgaris HOM05D002458 ORTHO05D002603 2.2e-12 76.3 133 39.1
Glyma.02G133300 Glycine max HOM05D002458 ORTHO05D002603 2.9e-12 75.9 131 37.4
Sopen01g050400 Solanum pennellii HOM05D002458 ORTHO05D002603 2.9e-12 75.9 107 43.0
Glyma.07G211700 Glycine max HOM05D002458 ORTHO05D002603 3.8e-12 75.5 107 43.9
Solyc01g108170.3 Solanum lycopersicum HOM05D002458 ORTHO05D002603 3.8e-12 75.5 107 43.0
PGSC0003DMG400025891 Solanum tuberosum HOM05D002458 ORTHO05D002603 4.9e-12 75.1 107 43.9
MD10G1093900 Malus domestica HOM05D002458 ORTHO05D002603 8.4e-12 74.3 131 39.7
Cfa005475 Carpinus fangiana HOM05D002458 ORTHO05D002603 1.1e-11 73.9 110 42.7
FAN27G1641 Fragaria x ananassa HOM05D002458 ORTHO05D002603 1.4e-11 73.6 134 42.5
Lj4g0009220 Lotus japonicus HOM05D002458 ORTHO05D002603 1.4e-11 73.6 111 41.4
TAR376G0738 Trochodendron aralioides HOM05D002458 ORTHO05D002603 1.4e-11 73.6 124 44.4
FvH4_2g06210 Fragaria vesca HOM05D002458 ORTHO05D002603 2.4e-11 72.8 134 42.5
FAN24G3116 Fragaria x ananassa HOM05D002458 ORTHO05D002603 2.4e-11 72.8 134 42.5
Nitab4.5_0003503g0060 Nicotiana tabacum HOM05D002458 ORTHO05D002603 2.4e-11 72.8 108 44.4
CiPaw.06G143400 Carya illinoinensis HOM05D002458 ORTHO05D002603 3.2e-11 72.4 128 43.8
MD05G1079600 Malus domestica HOM05D002458 ORTHO05D002603 3.2e-11 72.4 129 38.8
FAN15G1604 Fragaria x ananassa HOM05D002458 ORTHO05D002603 4.2e-11 72.0 134 42.5
TAR628G0915 Trochodendron aralioides HOM05D002458 ORTHO05D002603 4.2e-11 72.0 131 44.3
COL.COLO4_32666 Corchorus olitorius HOM05D002458 ORTHO05D002603 5.4e-11 71.6 125 42.4
FAN20G0269 Fragaria x ananassa HOM05D002458 ORTHO05D002603 5.4e-11 71.6 134 42.5
Lalb_Chr16g0384661 Lupinus albus HOM05D002458 ORTHO05D002603 5.4e-11 71.6 116 44.0
Nitab4.5_0023509g0010 Nicotiana tabacum HOM05D002458 ORTHO05D002603 5.4e-11 71.6 125 40.8
CiPaw.01G019100 Carya illinoinensis HOM05D002458 ORTHO05D002603 9.3e-11 70.9 126 42.9
QL11p036042 Quercus lobata HOM05D002458 ORTHO05D002603 9.3e-11 70.9 129 41.1
Thecc.01G054400 Theobroma cacao HOM05D002458 ORTHO05D002603 9.3e-11 70.9 129 38.8
Ciclev10029915m.g Citrus clementina HOM05D002458 ORTHO05D002603 1.2e-10 70.5 127 36.2
Lsat_1_v5_gn_5_112820 Lactuca sativa HOM05D002458 ORTHO05D002603 1.2e-10 70.5 137 36.5
Prupe.8G123500 Prunus persica HOM05D002458 ORTHO05D002603 1.2e-10 70.5 127 40.9
Duzib147G0558 Durio zibethinus HOM05D002458 ORTHO05D002603 1.6e-10 70.1 121 39.7
PGR142G0732 Punica granatum HOM05D002458 ORTHO05D002603 1.6e-10 70.1 137 39.4
Duzib187G0864 Durio zibethinus HOM05D002458 ORTHO05D002603 2.7e-10 69.3 138 37.7
RcHm_v2.0_Chr6g0256981 Rosa chinensis HOM05D002458 ORTHO05D002603 2.7e-10 69.3 134 40.3
Solyc02g065020.2 Solanum lycopersicum HOM05D002458 ORTHO05D002603 2.7e-10 69.3 131 36.6
PGSC0003DMG400015780 Solanum tuberosum HOM05D002458 ORTHO05D002603 2.7e-10 69.3 115 36.5
CSS0050202 Camellia sinensis var. sinensis HOM05D002458 ORTHO05D002603 3.5e-10 68.9 122 43.4
Psat7g124200 Pisum sativum HOM05D002458 ORTHO05D002603 3.5e-10 68.9 107 42.1
Gohir.D12G068500 Gossypium hirsutum HOM05D002458 ORTHO05D002603 4.6e-10 68.6 130 38.5
Atru.chr5.2728 Acer truncatum HOM05D002458 ORTHO05D002603 6.0e-10 68.2 131 41.2
CSS0027699 Camellia sinensis var. sinensis HOM05D002458 ORTHO05D002603 6.0e-10 68.2 131 38.9
Peaxi162Scf00016g01824 Petunia axillaris HOM05D002458 ORTHO05D002603 6.0e-10 68.2 86 46.5
Potri.009G102800 Populus trichocarpa HOM05D002458 ORTHO05D002603 6.0e-10 68.2 126 36.5
CSS0005083 Camellia sinensis var. sinensis HOM05D002458 ORTHO05D002603 1.0e-09 67.4 122 42.6
Nitab4.5_0000728g0040 Nicotiana tabacum HOM05D002458 ORTHO05D002603 1.0e-09 67.4 124 41.1
Ca_18677_v3 Cicer arietinum L. HOM05D002458 ORTHO05D002603 1.3e-09 67.0 107 41.1
Gorai.008G074900 Gossypium raimondii HOM05D002458 ORTHO05D002603 1.3e-09 67.0 130 37.7
Manes.10G065400 Manihot esculenta HOM05D002458 ORTHO05D002603 1.3e-09 67.0 130 38.5
Manes.13G127400 Manihot esculenta HOM05D002458 ORTHO05D002603 1.3e-09 67.0 140 34.3
Nitab4.5_0005062g0030 Nicotiana tabacum HOM05D002458 ORTHO05D002603 1.3e-09 67.0 142 40.1
HanXRQChr10g0288991 Helianthus annuus HOM05D002458 ORTHO05D002603 1.8e-09 66.6 134 35.8
Gohir.A12G070600 Gossypium hirsutum HOM05D002458 ORTHO05D002603 2.3e-09 66.2 130 36.9
Potri.007G042600 Populus trichocarpa HOM05D002458 ORTHO05D002603 3.9e-09 65.5 129 35.7
Sopen02g015150 Solanum pennellii HOM05D002458 ORTHO05D002603 3.9e-09 65.5 132 36.4
HanXRQChr04g0128221 Helianthus annuus HOM05D002458 ORTHO05D002603 6.7e-09 64.7 145 41.4
Lsat_1_v5_gn_7_87020 Lactuca sativa HOM05D002458 ORTHO05D002603 8.7e-09 64.3 86 44.2
Manes.12G102900 Manihot esculenta HOM05D002458 ORTHO05D002603 8.7e-09 64.3 132 36.4
Peaxi162Scf00450g00733 Petunia axillaris HOM05D002458 ORTHO05D002603 8.7e-09 64.3 140 35.0
Potri.004G141600 Populus trichocarpa HOM05D002458 ORTHO05D002603 1.1e-08 63.9 129 36.4
Sabra09G0078700 Salix brachista HOM05D002458 ORTHO05D002603 1.1e-08 63.9 128 35.2
TWI79G1260 Tripterygium wilfordii HOM05D002458 ORTHO05D002603 1.1e-08 63.9 108 42.6
Sabra07G0037800 Salix brachista HOM05D002458 ORTHO05D002603 1.5e-08 63.5 120 37.5
TPR.G30834 Trifolium pratense HOM05D002458 ORTHO05D002603 1.5e-08 63.5 117 38.5
Actinidia16500 Actinidia chinensis HOM05D002458 ORTHO05D002603 1.9e-08 63.2 116 35.3
Sed0017415 Sechium edule HOM05D002458 ORTHO05D002603 1.9e-08 63.2 120 39.2
Ah.02g124270 Amaranthus hybridus HOM05D002458 ORTHO05D002603 2.5e-08 62.8 116 34.5
Carub.0003s1903 Capsella rubella HOM05D002458 ORTHO05D002603 2.5e-08 62.8 114 38.6
Eucgr.I00936 Eucalyptus grandis HOM05D002458 ORTHO05D002603 2.5e-08 62.8 130 36.9
PGSC0003DMG400025476 Solanum tuberosum HOM05D002458 ORTHO05D002603 2.5e-08 62.8 119 39.5
CAN.G165.22 Capsicum annuum HOM05D002458 ORTHO05D002603 3.3e-08 62.4 133 34.6
COL.COLO4_11399 Corchorus olitorius HOM05D002458 ORTHO05D002603 3.3e-08 62.4 121 38.0
Sabra04G0093500 Salix brachista HOM05D002458 ORTHO05D002603 4.3e-08 62.0 128 35.2
GSVIVG01022142001 Vitis vinifera HOM05D002458 ORTHO05D002603 4.3e-08 62.0 140 37.9
Medtr4g086340 Medicago truncatula HOM05D002458 ORTHO05D002603 5.6e-08 61.6 119 37.8
Nn1g04890 Nelumbo nucifera HOM05D002458 ORTHO05D002603 5.6e-08 61.6 125 39.2
Nn5g30245 Nelumbo nucifera HOM05D002458 ORTHO05D002603 5.6e-08 61.6 120 40.8
Rhsim05G0083500 Rhododendron simsii HOM05D002458 ORTHO05D002603 5.6e-08 61.6 128 35.9
TWI09G0929 Tripterygium wilfordii HOM05D002458 ORTHO05D002603 5.6e-08 61.6 130 36.9
A09p43660 Brassica napus HOM05D002458 ORTHO05D002603 7.4e-08 61.2 124 33.9
BolC8t50188H Brassica oleracea HOM05D002458 ORTHO05D002603 7.4e-08 61.2 123 33.3
Duzib052G0113 Durio zibethinus HOM05D002458 ORTHO05D002603 7.4e-08 61.2 128 37.5
Thecc.02G099600 Theobroma cacao HOM05D002458 ORTHO05D002603 7.4e-08 61.2 130 36.2
Oeu004830.1 Olea europaea HOM05D002458 ORTHO05D002603 9.6e-08 60.8 116 38.8
Aqoxy5G01250 Aquilegia oxysepala HOM05D002458 ORTHO05D002603 1.3e-07 60.5 127 37.8
Haze_15416 Corylus avellana HOM05D002458 ORTHO05D002603 1.3e-07 60.5 122 36.1
Gorai.007G212200 Gossypium raimondii HOM05D002458 ORTHO05D002603 1.3e-07 60.5 123 39.8
BcaC07g39525 Brassica carinata HOM05D002458 ORTHO05D002603 1.6e-07 60.1 124 33.9
FAN04G0719 Fragaria x ananassa HOM05D002458 ORTHO05D002603 1.6e-07 60.1 125 35.2
FAN12G1655 Fragaria x ananassa HOM05D002458 ORTHO05D002603 1.6e-07 60.1 125 35.2
FAN26G2469 Fragaria x ananassa HOM05D002458 ORTHO05D002603 1.6e-07 60.1 125 35.2
Gohir.A11G191400 Gossypium hirsutum HOM05D002458 ORTHO05D002603 1.6e-07 60.1 120 38.3
THA.LOC104819584 Tarenaya hassleriana HOM05D002458 ORTHO05D002603 2.1e-07 59.7 123 35.8
AL3G32580 Arabidopsis lyrata HOM05D002458 ORTHO05D002603 2.8e-07 59.3 86 43.0
BraA09t39826Z Brassica rapa HOM05D002458 ORTHO05D002603 2.8e-07 59.3 124 33.9
ECA234G2959 Erigeron canadensis HOM05D002458 ORTHO05D002603 2.8e-07 59.3 139 35.3
FAN19G0517 Fragaria x ananassa HOM05D002458 ORTHO05D002603 2.8e-07 59.3 125 35.2
FAN23G1767 Fragaria x ananassa HOM05D002458 ORTHO05D002603 2.8e-07 59.3 125 35.2
FAN28G2673 Fragaria x ananassa HOM05D002458 ORTHO05D002603 2.8e-07 59.3 125 35.2
C08p25730 Brassica napus HOM05D002458 ORTHO05D002603 3.7e-07 58.9 123 32.5
ClCG05G010020 Citrullus lanatus HOM05D002458 ORTHO05D002603 3.7e-07 58.9 64 48.4
Ciclev10026611m.g Citrus clementina HOM05D002458 ORTHO05D002603 3.7e-07 58.9 128 36.7
Eucgr.H02010 Eucalyptus grandis HOM05D002458 ORTHO05D002603 3.7e-07 58.9 125 36.8
FAN11G1855 Fragaria x ananassa HOM05D002458 ORTHO05D002603 3.7e-07 58.9 125 34.4
FAN16G2042 Fragaria x ananassa HOM05D002458 ORTHO05D002603 3.7e-07 58.9 125 34.4
Lsat_1_v5_gn_4_166120 Lactuca sativa HOM05D002458 ORTHO05D002603 3.7e-07 58.9 87 42.5
Duzib248G1687 Durio zibethinus HOM05D002458 ORTHO05D002603 4.8e-07 58.5 124 37.1
Gohir.D02G210400 Gossypium hirsutum HOM05D002458 ORTHO05D002603 4.8e-07 58.5 128 37.5
Gorai.005G238400 Gossypium raimondii HOM05D002458 ORTHO05D002603 4.8e-07 58.5 128 37.5
Lalb_Chr05g0226601 Lupinus albus HOM05D002458 ORTHO05D002603 4.8e-07 58.5 137 36.5
Psat2g166160 Pisum sativum HOM05D002458 ORTHO05D002603 4.8e-07 58.5 124 34.7
SalBow1G7029 Salvia bowleyana HOM05D002458 ORTHO05D002603 4.8e-07 58.5 84 45.2
Duzib264G0584 Durio zibethinus HOM05D002458 ORTHO05D002603 6.2e-07 58.2 130 35.4
AT3G19200 Arabidopsis thaliana HOM05D002458 ORTHO05D002603 8.1e-07 57.8 86 41.9
Cc07_g05940 Coffea canephora HOM05D002458 ORTHO05D002603 8.1e-07 57.8 135 38.5
FvH4_1g15910 Fragaria vesca HOM05D002458 ORTHO05D002603 8.1e-07 57.8 125 34.4
BcaB01g00603 Brassica carinata HOM05D002458 ORTHO05D002603 1.1e-06 57.4 124 33.1
CAN.G836.76 Capsicum annuum HOM05D002458 ORTHO05D002603 1.1e-06 57.4 132 34.8
Gohir.A03G189800 Gossypium hirsutum HOM05D002458 ORTHO05D002603 1.1e-06 57.4 129 38.0
Psat4g087040 Pisum sativum HOM05D002458 ORTHO05D002603 1.1e-06 57.4 130 34.6
BcaB06g25976 Brassica carinata HOM05D002458 ORTHO05D002603 1.4e-06 57.0 107 38.3
Dinv29979 Davidia involucrata HOM05D002458 ORTHO05D002603 1.8e-06 56.6 130 33.1
Eucgr.H01652 Eucalyptus grandis HOM05D002458 ORTHO05D002603 1.8e-06 56.6 126 36.5
Lj2g0015041 Lotus japonicus HOM05D002458 ORTHO05D002603 1.8e-06 56.6 130 35.4
RcHm_v2.0_Chr2g0105301 Rosa chinensis HOM05D002458 ORTHO05D002603 1.8e-06 56.6 126 34.1
MSTRG.23756 Avicennia marina HOM05D002458 ORTHO05D002603 2.4e-06 56.2 131 33.6
MELO3C007556.2 Cucumis melo HOM05D002458 ORTHO05D002603 2.4e-06 56.2 140 32.9
HanXRQChr16g0497601 Helianthus annuus HOM05D002458 ORTHO05D002603 2.4e-06 56.2 134 35.1
CsaV3_2G016870 Cucumis sativus L. HOM05D002458 ORTHO05D002603 3.1e-06 55.8 120 38.3
TAR381G1245 Trochodendron aralioides HOM05D002458 ORTHO05D002603 3.1e-06 55.8 92 42.4
unitig_899.g14964 Utricularia gibba HOM05D002458 ORTHO05D002603 3.1e-06 55.8 136 36.8
HanXRQChr07g0191581 Helianthus annuus HOM05D002458 ORTHO05D002603 4.0e-06 55.5 129 36.4
Hma1.2p1_0461F.1_g157900 Hydrangea macrophylla HOM05D002458 ORTHO05D002603 4.0e-06 55.5 140 34.3
PSO170G0732 Papaver somniferum HOM05D002458 ORTHO05D002603 5.3e-06 55.1 120 36.7
PGR042G0791 Punica granatum HOM05D002458 ORTHO05D002603 5.3e-06 55.1 130 35.4
HPP92_004231 Vanilla planifolia HOM05D002458 ORTHO05D002603 5.3e-06 55.1 127 36.2
BolC1t00421H Brassica oleracea HOM05D001453 ORTHO05D002020 6.9e-06 54.7 98 39.8
Lalb_Chr09g0323131 Lupinus albus HOM05D002458 ORTHO05D002603 6.9e-06 54.7 126 34.9
TWI75G1467 Tripterygium wilfordii HOM05D002458 ORTHO05D002603 6.9e-06 54.7 80 43.8
CsaV3_6G043200 Cucumis sativus L. HOM05D002458 ORTHO05D002603 9.0e-06 54.3 126 32.5


User provided reference genes

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