Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold13G06566 Striga asiatica HOM05D005925 ORTHO05D007270 2.0e-152 542.3 263 100.0
SGA_v2.0_scaffold55G19820 Striga asiatica HOM05D005925 ORTHO05D007270 1.3e-111 406.8 261 76.2
Migut.N01222 Erythranthe guttata HOM05D005925 ORTHO05D007270 8.7e-108 394.0 261 73.6
SalBow1G0951 Salvia bowleyana HOM05D005925 ORTHO05D007270 6.3e-106 387.9 261 73.9
Oeu034077.1 Olea europaea HOM05D005925 ORTHO05D007270 2.6e-104 382.5 261 69.7
MSTRG.27750 Avicennia marina HOM05D005925 ORTHO05D007270 1.0e-103 380.6 261 71.3
SalBow3G3631 Salvia bowleyana HOM05D005925 ORTHO05D007270 2.9e-103 379.0 261 72.0
vmacro22671 Vaccinium macrocarpon HOM05D005925 ORTHO05D007270 5.9e-96 354.8 262 65.3
Rhsim05G0078300 Rhododendron simsii HOM05D005925 ORTHO05D007270 1.3e-95 353.6 262 65.3
HanXRQChr10g0307581 Helianthus annuus HOM05D005925 ORTHO05D007270 8.5e-95 350.9 262 63.4
Actinidia17837 Actinidia chinensis HOM05D005925 ORTHO05D007270 1.1e-94 350.5 262 65.3
Cfa004956 Carpinus fangiana HOM05D005925 ORTHO05D007270 1.9e-94 349.7 262 64.1
Manes.17G097200 Manihot esculenta HOM05D005925 ORTHO05D007270 1.6e-93 346.7 262 64.5
Thecc.02G029300 Theobroma cacao HOM05D005925 ORTHO05D007270 2.1e-93 346.3 262 63.4
Peaxi162Scf00016g01229 Petunia axillaris HOM05D005925 ORTHO05D007270 3.6e-93 345.5 261 64.4
CiPaw.05G059200 Carya illinoinensis HOM05D005925 ORTHO05D007270 1.0e-92 344.0 265 62.6
Lsat_1_v5_gn_5_117341 Lactuca sativa HOM05D005925 ORTHO05D007270 1.0e-92 344.0 263 63.9
Cc02_g18140 Coffea canephora HOM05D005925 ORTHO05D007270 1.4e-92 343.6 261 63.2
DCAR_003633 Daucus carota HOM05D005925 ORTHO05D007270 3.9e-92 342.0 265 63.0
COL.COLO4_17783 Corchorus olitorius HOM05D005925 ORTHO05D007270 6.7e-92 341.3 265 62.6
Solyc01g109130.3 Solanum lycopersicum HOM05D005925 ORTHO05D007270 6.7e-92 341.3 261 62.8
Sopen01g051330 Solanum pennellii HOM05D005925 ORTHO05D007270 6.7e-92 341.3 261 62.8
Gohir.D02G235800 Gossypium hirsutum HOM05D005925 ORTHO05D007270 2.6e-91 339.3 262 63.0
Duzib248G1621 Durio zibethinus HOM05D005925 ORTHO05D007270 5.7e-91 338.2 262 61.8
CAN.G322.90 Capsicum annuum HOM05D005925 ORTHO05D007270 7.4e-91 337.8 261 62.1
Gohir.A03G214300 Gossypium hirsutum HOM05D005925 ORTHO05D007270 7.4e-91 337.8 262 63.0
Gorai.005G263900 Gossypium raimondii HOM05D005925 ORTHO05D007270 9.7e-91 337.4 262 62.6
FvH4_5g27360 Fragaria vesca HOM05D005925 ORTHO05D007270 1.3e-90 337.0 263 61.6
QL11p039405 Quercus lobata HOM05D005925 ORTHO05D007270 6.3e-90 334.7 261 62.8
TAR628G0202 Trochodendron aralioides HOM05D005925 ORTHO05D007270 2.4e-89 332.8 262 61.8
TWI31G0896 Tripterygium wilfordii HOM05D005925 ORTHO05D007270 4.1e-89 332.0 262 61.1
ECA234G0394 Erigeron canadensis HOM05D005925 ORTHO05D000001 5.3e-89 331.6 251 62.2
PGR142G0964 Punica granatum HOM05D005925 ORTHO05D007270 7.0e-89 331.3 262 62.2
Nitab4.5_0012894g0020 Nicotiana tabacum HOM05D005925 ORTHO05D007270 1.6e-88 330.1 271 60.5
FAN08G3356 Fragaria x ananassa HOM05D005925 ORTHO05D007270 4.5e-88 328.6 274 59.5
MD10G1085900 Malus domestica HOM05D005925 ORTHO05D007270 4.5e-88 328.6 263 61.6
RcHm_v2.0_Chr6g0261021 Rosa chinensis HOM05D005925 ORTHO05D007270 4.5e-88 328.6 263 60.8
PGSC0003DMG400025833 Solanum tuberosum HOM05D005925 ORTHO05D007270 5.9e-88 328.2 261 61.7
GSVIVG01031883001 Vitis vinifera HOM05D005925 ORTHO05D007270 5.9e-88 328.2 263 61.2
QL09p038983 Quercus lobata HOM05D005925 ORTHO05D007270 7.7e-88 327.8 262 61.5
FAN04G2258 Fragaria x ananassa HOM05D005925 ORTHO05D007270 2.9e-87 325.9 274 58.8
Eucgr.I01229 Eucalyptus grandis HOM05D005925 ORTHO05D007270 1.1e-86 323.9 262 61.5
Sc14g0001730 Simmondsia chinensis HOM05D005925 ORTHO05D007270 1.1e-86 323.9 263 59.3
Prupe.8G110200 Prunus persica HOM05D005925 ORTHO05D007270 4.2e-86 322.0 263 58.9
Ciclev10029009m.g Citrus clementina HOM05D005925 ORTHO05D007270 9.4e-86 320.9 262 60.7
PSO170G4903 Papaver somniferum HOM05D005925 ORTHO05D007270 1.6e-85 320.1 263 59.3
MBI16_g31334_MAGBIO Magnolia biondii HOM05D005925 ORTHO05D007270 3.6e-85 318.9 317 52.4
Potri.004G148500 Populus trichocarpa HOM05D005925 ORTHO05D007270 8.0e-85 317.8 262 58.8
Potri.004G148700 Populus trichocarpa HOM05D005925 ORTHO05D007270 8.0e-85 317.8 262 58.8
PSO700G0338 Papaver somniferum HOM05D005925 ORTHO05D007270 3.0e-84 315.8 263 58.9
Hund00298 Selenicereus undatus HOM05D005925 ORTHO05D007270 4.0e-84 315.5 263 57.4
Hund00305 Selenicereus undatus HOM05D005925 ORTHO05D007270 4.0e-84 315.5 263 57.4
Nitab4.5_0008189g0020 Nicotiana tabacum HOM05D005925 ORTHO05D007270 7.5e-83 311.2 247 60.3
Aqoxy5G01754 Aquilegia oxysepala HOM05D005925 ORTHO05D007270 2.8e-82 309.3 261 59.4
CANSAT25G2034 Cannabis sativa HOM05D005925 ORTHO05D007270 1.1e-81 307.4 266 55.3
Dinv23574 Davidia involucrata HOM05D005925 ORTHO05D007270 3.1e-81 305.8 206 69.4
unitig_8.g3429 Utricularia gibba HOM05D005925 ORTHO05D007270 3.1e-81 305.8 241 62.2
Carub.0003s1876 Capsella rubella HOM05D005925 ORTHO05D007270 5.3e-81 305.1 262 58.8
Glyma.11G122900 Glycine max HOM05D005925 ORTHO05D007270 9.1e-81 304.3 263 59.3
Lalb_Chr01g0002931 Lupinus albus HOM05D005925 ORTHO05D007270 1.2e-80 303.9 262 57.6
Phvul.011G049700 Phaseolus vulgaris HOM05D005925 ORTHO05D007270 2.0e-80 303.1 262 56.9
Psat7g207080 Pisum sativum HOM05D005925 ORTHO05D007270 4.5e-80 302.0 264 57.6
A05p30640 Brassica napus HOM05D005925 ORTHO05D007270 2.2e-79 299.7 262 56.9
ClCG02G005470 Citrullus lanatus HOM05D005925 ORTHO05D007270 2.2e-79 299.7 270 55.9
Lj3g0007485 Lotus japonicus HOM05D005925 ORTHO05D007270 2.2e-79 299.7 265 57.0
Thhalv10021280m.g Eutrema salsugineum HOM05D005925 ORTHO05D007270 2.9e-79 299.3 262 57.3
Glyma.12G047700 Glycine max HOM05D005925 ORTHO05D007270 3.8e-79 298.9 263 57.4
Medtr4g068475 Medicago truncatula HOM05D005925 ORTHO05D007270 5.0e-79 298.5 262 56.1
Ah.01g019810 Amaranthus hybridus HOM05D005925 ORTHO05D007270 1.9e-78 296.6 262 54.6
TPR.G10224 Trifolium pratense HOM05D005925 ORTHO05D007270 1.9e-78 296.6 262 56.1
Hma1.2p1_0584F.1_g183295 Hydrangea macrophylla HOM05D005925 ORTHO05D007270 2.5e-78 296.2 223 65.0
Sp3g17030 Schrenkiella parvula HOM05D005925 ORTHO05D007270 3.2e-78 295.8 262 56.5
AT3G18940 Arabidopsis thaliana HOM05D005925 ORTHO05D007270 5.5e-78 295.0 262 56.9
AL3G32330 Arabidopsis lyrata HOM05D005925 ORTHO05D007270 9.4e-78 294.3 262 56.5
VMungo1127G2028 Vigna mungo HOM05D005925 ORTHO05D007270 9.4e-78 294.3 262 55.3
CARHR094360 Cardamine hirsuta HOM05D005925 ORTHO05D007270 2.1e-77 293.1 262 56.5
Ca_20823_v3 Cicer arietinum L. HOM05D005925 ORTHO05D007270 2.7e-77 292.7 262 55.3
Lj9C365T5 Lonicera japonica HOM05D005925 ORTHO05D007270 3.6e-77 292.4 235 62.1
CsaV3_7G010150 Cucumis sativus L. HOM05D005925 ORTHO05D007270 4.7e-77 292.0 262 56.1
C05p46520 Brassica napus HOM05D005925 ORTHO05D007270 8.0e-77 291.2 262 56.1
ATR0733G151 Amborella trichopoda HOM05D005925 ORTHO05D007270 1.0e-76 290.8 262 54.2
BcaB06g25946 Brassica carinata HOM05D005925 ORTHO05D007270 1.0e-76 290.8 262 55.7
MELO3C018414.2 Cucumis melo HOM05D005925 ORTHO05D007270 1.0e-76 290.8 263 56.3
Aa31LG8G5780 Aethionema arabicum HOM05D005925 ORTHO05D007270 4.0e-76 288.9 262 56.1
Sed0018300 Sechium edule HOM05D005925 ORTHO05D007270 6.8e-76 288.1 262 56.1
CDE01G0621 Ceratophyllum demersum HOM05D005925 ORTHO05D007270 2.0e-75 286.6 261 54.8
A03p40910 Brassica napus HOM05D005925 ORTHO05D007270 2.6e-75 286.2 263 55.5
BraA03t13250Z Brassica rapa HOM05D005925 ORTHO05D007270 2.6e-75 286.2 263 55.5
arahy.Tifrunner.gnm1.ann1.JZQ5CR Arachis hypogaea HOM05D005925 ORTHO05D007270 3.4e-75 285.8 263 54.4
arahy.Tifrunner.gnm1.ann1.EU6551 Arachis hypogaea HOM05D005925 ORTHO05D007270 5.7e-75 285.0 263 54.8
EL10Ac9g21785 Beta vulgaris HOM05D005925 ORTHO05D007270 5.7e-75 285.0 241 57.7
Sabra04G0098600 Salix brachista HOM05D005925 ORTHO05D007270 5.7e-75 285.0 333 47.1
THA.LOC104803449 Tarenaya hassleriana HOM05D005925 ORTHO05D007270 9.8e-75 284.3 262 55.3
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 3.7e-74 282.3 246 58.5
Actinidia27921 Actinidia chinensis HOM05D005925 ORTHO05D007270 8.3e-74 281.2 263 56.7
Zm00001eb058630 Zea mays HOM05D005925 ORTHO05D007270 1.4e-73 280.4 263 52.1
Os03g0766900 Oryza sativa ssp. japonica HOM05D005925 ORTHO05D007270 5.4e-73 278.5 265 51.3
Nn6g32156 Nelumbo nucifera HOM05D005925 ORTHO05D007270 2.7e-72 276.2 236 58.1
Haze_02451 Corylus avellana HOM05D005925 ORTHO05D007270 2.5e-70 269.6 242 57.0
AUR62011394 Chenopodium quinoa HOM05D005925 ORTHO05D007270 4.2e-70 268.9 230 57.8
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 2.1e-69 266.5 215 60.5
BcaB04g19013 Brassica carinata HOM05D005925 ORTHO05D007270 8.9e-68 261.2 263 52.9
Cpa.g.sc62.88 Carica papaya HOM05D005925 ORTHO05D007270 3.5e-64 249.2 201 57.7
RcHm_v2.0_Chr6g0260971 Rosa chinensis HOM05D005925 ORTHO05D007270 2.9e-63 246.1 262 51.1
BcaC01g03666 Brassica carinata HOM05D005925 ORTHO05D007270 1.8e-60 236.9 260 49.2
C03p49920 Brassica napus HOM05D005925 ORTHO05D007270 6.8e-60 235.0 218 56.4
BolC3t17285H Brassica oleracea HOM05D005925 ORTHO05D007270 6.8e-60 235.0 218 56.4
FvH4_2g07422 Fragaria vesca HOM05D005925 ORTHO05D007270 1.2e-59 234.2 231 54.1
Pp3c2_22470 Physcomitrium patens HOM05D005925 ORTHO05D007270 3.1e-52 209.5 262 43.1
Pp3c2_22478 Physcomitrium patens HOM05D005925 ORTHO05D007270 3.1e-52 209.5 262 43.1
FAN15G3711 Fragaria x ananassa HOM05D001143 ORTHO05D001457 6.8e-52 208.4 192 55.2
HPP92_015723 Vanilla planifolia HOM05D005925 ORTHO05D007270 4.1e-49 199.1 200 54.0
Haze_02453 Corylus avellana HOM05D005925 ORTHO05D007270 8.6e-47 191.4 182 54.9
SMO115G0205 Selaginella moellendorffii HOM05D005925 ORTHO05D007270 1.3e-42 177.6 278 37.1
Mapoly0073s0081 Marchantia polymorpha HOM05D005925 ORTHO05D007270 1.7e-42 177.2 262 40.5
FAN24G2811 Fragaria x ananassa HOM05D001143 ORTHO05D007270 3.7e-42 176.0 175 53.7
SEGI_41274 Sequoiadendron giganteum HOM05D005925 ORTHO05D007270 2.1e-37 160.2 152 50.7
AagrBONN_evm.TU.Sc2ySwM_228.3883 Anthoceros agrestis HOM05D005925 ORTHO05D007270 4.6e-32 142.5 183 39.9
Atru.chr5.2902 Acer truncatum HOM05D005925 ORTHO05D007270 5.1e-31 139.0 139 53.2
RcHm_v2.0_Chr7g0218511 Rosa chinensis HOM05D005925 ORTHO05D007270 5.1e-31 139.0 201 39.3
Atru.chr5.2901 Acer truncatum HOM05D005925 ORTHO05D007270 1.5e-30 137.5 114 63.2
BraA05t21906Z Brassica rapa HOM05D005925 ORTHO05D007270 9.3e-25 118.2 114 55.3
BolC5t33380H Brassica oleracea HOM05D005925 ORTHO05D007270 1.6e-24 117.5 114 54.4
SMO115G0183 Selaginella moellendorffii HOM05D005925 ORTHO05D007270 6.0e-24 115.5 156 39.1
CDE02G0959 Ceratophyllum demersum HOM05D007402 ORTHO05D003673 7.8e-24 115.2 122 51.6
CBR_g26043 Chara braunii HOM05D005925 ORTHO05D007270 5.8e-19 99.0 337 24.0
MCO11G864 Micromonas commoda HOM05D005925 ORTHO05D007270 6.9e-12 75.5 279 25.4
FvH4_5g16250 Fragaria vesca HOM05D005925 ORTHO05D007270 1.1e-09 68.2 75 49.3
SEGI_01484 Sequoiadendron giganteum HOM05D005925 ORTHO05D007270 1.4e-09 67.8 76 51.3


User provided reference genes

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