Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold13G06459 Striga asiatica HOM05D005062 ORTHO05D006410 2.0e-234 815.5 426 100.0
Migut.F01613 Erythranthe guttata HOM05D005062 ORTHO05D006410 1.1e-107 394.4 477 54.3
SalBow6G6867 Salvia bowleyana HOM05D005062 ORTHO05D006410 2.6e-101 373.2 485 49.9
MSTRG.8110 Avicennia marina HOM05D005062 ORTHO05D006410 4.6e-98 362.5 472 50.2
Oeu026579.1 Olea europaea HOM05D005062 ORTHO05D006410 4.6e-98 362.5 476 49.6
Dinv11848 Davidia involucrata HOM05D005062 ORTHO05D006410 2.2e-84 317.0 435 48.5
CiPaw.13G040200 Carya illinoinensis HOM05D005062 ORTHO05D006410 1.4e-83 314.3 432 48.8
GSVIVG01011284001 Vitis vinifera HOM05D005062 ORTHO05D006410 7.1e-83 312.0 467 46.9
Actinidia18593 Actinidia chinensis HOM05D000444 ORTHO05D000489 9.2e-83 311.6 459 48.4
QL04p046667 Quercus lobata HOM05D005062 ORTHO05D006410 1.2e-82 311.2 483 46.2
Cfa010314 Carpinus fangiana HOM05D005062 ORTHO05D006410 1.3e-81 307.8 472 46.2
Solyc07g014740.3 Solanum lycopersicum HOM05D005062 ORTHO05D006410 2.5e-80 303.5 473 44.4
MD02G1255900 Malus domestica HOM05D005062 ORTHO05D006410 1.6e-79 300.8 464 45.7
Duzib106G1045 Durio zibethinus HOM05D005062 ORTHO05D006410 6.2e-79 298.9 404 48.3
Cc02_g09770 Coffea canephora HOM05D005062 ORTHO05D006410 1.1e-78 298.1 361 52.4
FvH4_7g05590 Fragaria vesca HOM05D005062 ORTHO05D006410 1.8e-78 297.4 459 45.3
FAN01G3081 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.8e-78 297.4 459 45.3
RcHm_v2.0_Chr1g0332571 Rosa chinensis HOM05D005062 ORTHO05D006410 3.1e-78 296.6 464 45.3
FAN10G1073 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.0e-77 293.9 459 45.1
PGR044G2170 Punica granatum HOM05D005062 ORTHO05D006410 2.0e-77 293.9 436 45.9
CAN.G54.5 Capsicum annuum HOM05D005062 ORTHO05D006410 2.6e-77 293.5 417 47.2
Eucgr.J00992 Eucalyptus grandis HOM05D005062 ORTHO05D006410 7.6e-77 292.0 461 44.3
Cpa.g.sc183.10 Carica papaya HOM05D005062 ORTHO05D006410 1.7e-76 290.8 455 44.0
HanXRQChr08g0217771 Helianthus annuus HOM05D005062 ORTHO05D006410 3.8e-76 289.7 488 43.0
FAN23G1954 Fragaria x ananassa HOM05D005062 ORTHO05D006410 4.9e-76 289.3 412 47.1
TAR623G1543 Trochodendron aralioides HOM05D005062 ORTHO05D006410 1.1e-75 288.1 347 53.3
ECA233G2289 Erigeron canadensis HOM05D005062 ORTHO05D006410 3.2e-75 286.6 462 43.9
Gorai.008G099000 Gossypium raimondii HOM05D005062 ORTHO05D006410 5.4e-75 285.8 404 46.8
DCAR_006341 Daucus carota HOM05D005062 ORTHO05D006410 7.1e-75 285.4 480 41.9
FAN23G1474 Fragaria x ananassa HOM05D005062 ORTHO05D006410 7.1e-75 285.4 398 48.2
Atru.chr12.1008 Acer truncatum HOM05D005062 ORTHO05D006410 1.2e-74 284.6 453 44.6
CSS0050380 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 1.3e-73 281.2 482 43.8
Nitab4.5_0010225g0010 Nicotiana tabacum HOM05D005062 ORTHO05D006410 2.3e-73 280.4 424 46.5
Lsat_1_v5_gn_8_23960 Lactuca sativa HOM05D005062 ORTHO05D006410 3.9e-73 279.6 477 42.3
Gohir.A12G092722 Gossypium hirsutum HOM05D005062 ORTHO05D006410 5.1e-73 279.3 401 46.1
Lalb_Chr19g0129181 Lupinus albus HOM05D005062 ORTHO05D006410 1.1e-72 278.1 473 41.9
FAN23G2695 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.9e-72 277.3 346 52.3
FAN06G1220 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.5e-72 276.9 433 45.0
Aqoxy2G01214 Aquilegia oxysepala HOM05D005062 ORTHO05D006410 4.3e-72 276.2 434 44.2
Manes.10G058650 Manihot esculenta HOM05D005062 ORTHO05D006410 2.1e-71 273.9 358 51.1
CsaV3_2G034960 Cucumis sativus L. HOM05D005062 ORTHO05D006410 3.6e-71 273.1 401 45.1
Glyma.10G111800 Glycine max HOM05D005062 ORTHO05D006410 8.1e-71 271.9 478 40.2
Nn2g14130 Nelumbo nucifera HOM05D005062 ORTHO05D006410 8.1e-71 271.9 471 41.6
Phvul.007G247700 Phaseolus vulgaris HOM05D005062 ORTHO05D006410 1.4e-70 271.2 434 42.9
Sabra08G0014600 Salix brachista HOM05D005062 ORTHO05D006410 1.4e-70 271.2 474 42.2
Peaxi162Scf00235g10011 Petunia axillaris HOM05D005062 ORTHO05D006410 1.8e-70 270.8 469 41.8
Potri.008G021600 Populus trichocarpa HOM05D005062 ORTHO05D006410 1.8e-70 270.8 472 41.5
AUR62034504 Chenopodium quinoa HOM05D005062 ORTHO05D006410 1.2e-69 268.1 447 42.1
Ca_12731_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 1.2e-69 268.1 406 42.4
Medtr1g050462 Medicago truncatula HOM05D005062 ORTHO05D006410 1.2e-69 268.1 406 43.6
CSS0021342 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 1.5e-69 267.7 482 42.1
TPR.G10638 Trifolium pratense HOM05D005062 ORTHO05D006410 1.5e-69 267.7 345 48.7
Lsat_1_v5_gn_2_104621 Lactuca sativa HOM05D005062 ORTHO05D006410 3.4e-69 266.5 447 41.2
HanXRQChr11g0342201 Helianthus annuus HOM05D005062 ORTHO05D006410 4.5e-69 266.2 482 39.8
Rhsim03G0099700 Rhododendron simsii HOM05D005062 ORTHO05D006410 4.5e-69 266.2 493 40.8
THA.LOC104824209 Tarenaya hassleriana HOM05D005062 ORTHO05D006410 2.2e-68 263.8 350 47.4
ECA238G3155 Erigeron canadensis HOM05D005062 ORTHO05D006410 4.9e-68 262.7 361 46.5
Lj5g0026270 Lotus japonicus HOM05D005062 ORTHO05D006410 1.8e-65 254.2 395 41.8
Os02g0531200 Oryza sativa ssp. japonica HOM05D005062 ORTHO05D006410 6.7e-65 252.3 406 41.4
HanXRQChr08g0217571 Helianthus annuus HOM05D005062 ORTHO05D006410 3.3e-64 250.0 489 37.8
CDE06G2329 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 9.6e-64 248.4 479 38.2
arahy.Tifrunner.gnm1.ann1.ZAGE2X Arachis hypogaea HOM05D005062 ORTHO05D006410 3.7e-63 246.5 345 45.2
AL5G37480 Arabidopsis lyrata HOM05D005062 ORTHO05D006410 4.8e-63 246.1 455 40.0
arahy.Tifrunner.gnm1.ann1.BZ57JC Arachis hypogaea HOM05D005062 ORTHO05D006410 1.8e-62 244.2 334 47.0
FAN03G1004 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.1e-62 243.4 376 47.1
AT3G56160 Arabidopsis thaliana HOM05D005062 ORTHO05D006410 9.0e-62 241.9 396 42.4
Hund06778 Selenicereus undatus HOM05D005062 ORTHO05D006410 5.8e-61 239.2 377 43.5
ATR0081G026 Amborella trichopoda HOM05D005062 ORTHO05D006410 7.6e-61 238.8 401 40.4
Sp5g06340 Schrenkiella parvula HOM05D005062 ORTHO05D006410 1.1e-59 235.0 429 40.6
BcaB01g00026 Brassica carinata HOM05D002435 ORTHO05D002550 1.9e-59 234.2 351 44.7
BcaC07g39930 Brassica carinata HOM05D002435 ORTHO05D002550 2.5e-59 233.8 438 39.7
BolC8t50765H Brassica oleracea HOM05D002435 ORTHO05D002550 2.5e-59 233.8 438 39.7
BraA09t40366Z Brassica rapa HOM05D005062 ORTHO05D006410 2.5e-59 233.8 359 44.0
C08p31440 Brassica napus HOM05D002435 ORTHO05D002550 5.5e-59 232.6 335 46.3
A09p49130 Brassica napus HOM05D002435 ORTHO05D002550 7.1e-59 232.3 351 44.7
CARHR166310 Cardamine hirsuta HOM05D005062 ORTHO05D006410 3.5e-58 229.9 301 49.2
GSVIVG01036146001 Vitis vinifera HOM05D005062 ORTHO05D006410 1.8e-57 227.6 459 38.8
Eucgr.B03869 Eucalyptus grandis HOM05D005062 ORTHO05D006410 3.9e-57 226.5 364 40.4
EL10As25g24233 Beta vulgaris HOM05D005062 ORTHO05D006410 1.5e-56 224.6 455 36.5
Sopen07g005620 Solanum pennellii HOM05D000002 ORTHO05D000001 8.2e-55 218.8 418 40.0
CiPaw.14G101300 Carya illinoinensis HOM05D005062 ORTHO05D006410 5.8e-53 212.6 436 36.5
HPP92_007815 Vanilla planifolia HOM05D005062 ORTHO05D006410 7.6e-53 212.2 390 38.2
PGR102G2753 Punica granatum HOM05D005062 ORTHO05D006410 4.9e-52 209.5 350 40.9
Thhalv10006005m.g Eutrema salsugineum HOM05D005062 ORTHO05D006410 6.5e-52 209.1 444 37.8
Ah.09g232820 Amaranthus hybridus HOM05D005062 ORTHO05D006410 1.9e-51 207.6 385 38.2
Ah.08g215800 Amaranthus hybridus HOM05D005062 ORTHO05D006410 2.5e-48 197.2 411 36.5
Sc12g0004460 Simmondsia chinensis HOM05D005062 ORTHO05D006410 2.5e-48 197.2 346 39.9
Sed0016949 Sechium edule HOM05D005062 ORTHO05D006410 4.1e-46 189.9 302 42.4
unitig_578.g16343 Utricularia gibba HOM05D005062 ORTHO05D006410 4.1e-46 189.9 335 42.1
Duzib128G0173 Durio zibethinus HOM05D005062 ORTHO05D006410 4.5e-45 186.4 238 51.7
Lj3A928T57 Lonicera japonica HOM05D005062 ORTHO05D006410 7.7e-45 185.7 248 51.2
CiPaw.14G101100 Carya illinoinensis HOM05D005062 ORTHO05D006410 6.5e-44 182.6 431 35.5
Psat6g129720 Pisum sativum HOM05D005062 ORTHO05D006410 8.5e-44 182.2 153 64.7
Haze_02484 Corylus avellana HOM05D005062 ORTHO05D006410 1.0e-41 175.3 159 62.3
VMungo0720G3089 Vigna mungo HOM05D000444 ORTHO05D000489 6.7e-41 172.6 440 34.5
MD02G1256200 Malus domestica HOM05D005062 ORTHO05D006410 1.1e-40 171.8 127 70.1
Thecc.10G106400 Theobroma cacao HOM05D005062 ORTHO05D006410 1.5e-40 171.4 308 39.6
Gohir.D12G091480 Gossypium hirsutum HOM05D005062 ORTHO05D006410 4.5e-37 159.8 305 39.0
QL01p012456 Quercus lobata HOM05D005062 ORTHO05D006410 7.2e-35 152.5 133 60.2
EL10Ac7g15813 Beta vulgaris HOM05D005062 ORTHO05D006410 5.7e-32 142.9 188 43.1
A02p12720 Brassica napus HOM05D005062 ORTHO05D006410 1.3e-31 141.7 282 39.4
Haze_23392 Corylus avellana HOM05D005062 ORTHO05D006410 3.7e-31 140.2 278 36.7
Cfa010034 Carpinus fangiana HOM05D005062 ORTHO05D006410 1.7e-28 131.3 122 55.7
COL.COLO4_24555 Corchorus olitorius HOM05D005062 ORTHO05D006410 2.2e-28 131.0 102 70.6
AUR62009772 Chenopodium quinoa HOM05D005062 ORTHO05D006410 5.0e-28 129.8 142 49.3
AUR62039218 Chenopodium quinoa HOM05D005062 ORTHO05D006410 6.5e-28 129.4 287 36.2
Ciclev10032297m.g Citrus clementina HOM05D005062 ORTHO05D006410 8.0e-26 122.5 273 35.5
Ciclev10033893m.g Citrus clementina HOM05D005062 ORTHO05D006410 1.0e-25 122.1 104 65.4
Zm00001eb242730 Zea mays HOM05D005062 ORTHO05D006410 1.4e-25 121.7 239 35.6
FAN06G3794 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.5e-24 118.2 98 67.3
Mapoly0046s0115 Marchantia polymorpha HOM05D005062 ORTHO05D006410 2.2e-23 114.4 188 37.2
Prupe.2G079400 Prunus persica HOM05D005062 ORTHO05D006410 3.5e-21 107.1 267 34.5
Sc20g0001180 Simmondsia chinensis HOM05D003607 ORTHO05D004049 1.3e-20 105.1 252 34.5
Zm00001eb296300 Zea mays HOM05D005062 ORTHO05D006410 7.2e-19 99.4 231 32.5
MD02G1256100 Malus domestica HOM05D005062 ORTHO05D006410 1.2e-18 98.6 228 36.0
AagrBONN_evm.TU.Sc2ySwM_117.1142 Anthoceros agrestis HOM05D005062 ORTHO05D006410 2.6e-16 90.9 263 30.4
Cre09.g395700 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 3.5e-13 80.5 275 29.1
Carub.0005s2291 Capsella rubella HOM05D005062 ORTHO05D006410 4.5e-13 80.1 268 29.5
FAN01G2288 Fragaria x ananassa HOM05D005062 ORTHO05D006410 5.0e-12 76.6 55 72.7
PRCOL_00003606 Prasinoderma coloniale HOM05D005062 ORTHO05D006410 8.5e-12 75.9 304 27.6
CBR_g48207 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-11 75.1 106 45.3
SMO347G0520 Selaginella moellendorffii HOM05D005062 ORTHO05D006410 1.9e-11 74.7 333 28.8
RcHm_v2.0_Chr1g0332541 Rosa chinensis HOM05D005062 ORTHO05D006410 4.2e-11 73.6 60 66.7
FAN01G2457 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.6e-10 71.6 109 46.8
FvH4_7g05870 Fragaria vesca HOM05D005062 ORTHO05D006410 4.0e-09 67.0 166 35.5
FAN06G0036 Fragaria x ananassa HOM05D005062 ORTHO05D006410 4.0e-09 67.0 166 35.5
Cre09.g393250 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 2.0e-08 64.7 187 33.7
BraA02t06329Z Brassica rapa HOM05D005062 ORTHO05D006410 2.6e-08 64.3 109 41.3
Lj3C928T13 Lonicera japonica HOM05D005062 ORTHO05D006410 2.6e-08 64.3 154 34.4
Cre12.g521950 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 3.4e-08 63.9 185 28.1
Ca_12794_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 3.4e-08 63.9 54 63.0
Cre02.g147450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 5.7e-08 63.2 202 31.7
MCO15G192 Micromonas commoda HOM05D005062 ORTHO05D006410 9.8e-08 62.4 281 24.9
CDE08G0076 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 1.3e-07 62.0 35 80.0
MELO3C034937.2 Cucumis melo HOM05D005062 ORTHO05D006410 2.2e-07 61.2 68 54.4
Haze_02485 Corylus avellana HOM05D005062 ORTHO05D006410 5.4e-06 56.6 153 30.1


User provided reference genes

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