Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold13G06395 Striga asiatica HOM05D000101 ORTHO05D007021 2.1e-100 369.0 181 100.0
SGA_v2.0_scaffold79G25529 Striga asiatica HOM05D000101 ORTHO05D007021 2.1e-97 359.0 181 96.1
Dinv29321 Davidia involucrata HOM05D000101 ORTHO05D007021 3.9e-67 258.5 180 68.9
MSTRG.17651 Avicennia marina HOM05D000101 ORTHO05D007021 1.5e-66 256.5 185 70.8
Migut.N02406 Erythranthe guttata HOM05D000101 ORTHO05D007021 2.0e-66 256.1 170 74.7
GSVIVG01037393001 Vitis vinifera HOM05D000101 ORTHO05D007021 2.0e-66 256.1 179 69.3
Oeu041722.1 Olea europaea HOM05D000101 ORTHO05D007021 3.3e-66 255.4 169 74.0
GSVIVG01037400001 Vitis vinifera HOM05D000101 ORTHO05D007021 4.4e-66 255.0 179 68.7
CAN.G65.208 Capsicum annuum HOM05D000101 ORTHO05D007021 7.4e-66 254.2 182 68.7
CiPaw.13G147800 Carya illinoinensis HOM05D000101 ORTHO05D007021 7.4e-66 254.2 179 67.6
Dinv29324 Davidia involucrata HOM05D000101 ORTHO05D007021 2.8e-65 252.3 180 67.8
Dinv29322 Davidia involucrata HOM05D000101 ORTHO05D007021 3.7e-65 251.9 180 67.8
Cpa.g.sc9.381 Carica papaya HOM05D000101 ORTHO05D007021 4.8e-65 251.5 175 69.7
Haze_23275 Corylus avellana HOM05D000101 ORTHO05D007021 4.8e-65 251.5 179 69.3
CSS0002182 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D007021 6.3e-65 251.1 174 71.3
Lsat_1_v5_gn_5_88160 Lactuca sativa HOM05D000101 ORTHO05D007021 1.4e-64 250.0 169 71.0
DCAR_002122 Daucus carota HOM05D000101 ORTHO05D007021 1.8e-64 249.6 182 67.6
SalBow3G0539 Salvia bowleyana HOM05D000101 ORTHO05D007021 2.4e-64 249.2 173 71.7
CANSAT54G0276 Cannabis sativa HOM05D000101 ORTHO05D007021 3.1e-64 248.8 182 66.5
SGA_v2.0_scaffold52G19230 Striga asiatica HOM05D000101 ORTHO05D007021 3.1e-64 248.8 123 98.4
Actinidia20391 Actinidia chinensis HOM05D000101 ORTHO05D007021 7.0e-64 247.7 167 70.1
Peaxi162Scf00526g00083 Petunia axillaris HOM05D000101 ORTHO05D007021 9.1e-64 247.3 182 65.9
Rhsim13G0204000 Rhododendron simsii HOM05D000101 ORTHO05D007021 1.2e-63 246.9 148 78.4
Nitab4.5_0006265g0050 Nicotiana tabacum HOM05D000101 ORTHO05D007021 3.5e-63 245.4 182 64.8
Lj2C4T1 Lonicera japonica HOM05D000101 ORTHO05D007021 4.5e-63 245.0 171 67.3
Lj2C98T13 Lonicera japonica HOM05D000101 ORTHO05D007021 4.5e-63 245.0 171 67.8
RcHm_v2.0_Chr2g0110001 Rosa chinensis HOM05D000101 ORTHO05D007021 4.5e-63 245.0 179 67.6
Lalb_Chr06g0173421 Lupinus albus HOM05D000101 ORTHO05D007021 5.9e-63 244.6 177 66.7
Nitab4.5_0000271g0210 Nicotiana tabacum HOM05D000101 ORTHO05D007021 5.9e-63 244.6 172 67.4
Sc06g0003480 Simmondsia chinensis HOM05D000101 ORTHO05D007021 5.9e-63 244.6 172 70.3
Sopen06g030030 Solanum pennellii HOM05D000101 ORTHO05D007021 7.7e-63 244.2 182 64.3
FAN23G0853 Fragaria x ananassa HOM05D002590 ORTHO05D002763 1.0e-62 243.8 179 68.2
Solyc06g073615.1 Solanum lycopersicum HOM05D000101 ORTHO05D007021 1.0e-62 243.8 182 64.3
Aqoxy2G03523 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 1.3e-62 243.4 169 70.4
HanXRQChr10g0307811 Helianthus annuus HOM05D000101 ORTHO05D007021 1.3e-62 243.4 161 72.0
VMungo0540G1253 Vigna mungo HOM05D000101 ORTHO05D007021 1.3e-62 243.4 179 66.5
Cc01_g07360 Coffea canephora HOM05D000101 ORTHO05D007021 1.7e-62 243.0 185 66.5
Glyma.20G043800 Glycine max HOM05D000101 ORTHO05D007021 1.7e-62 243.0 177 67.2
Phvul.006G016500 Phaseolus vulgaris HOM05D000101 ORTHO05D007021 2.2e-62 242.7 169 68.6
TWI79G1559 Tripterygium wilfordii HOM05D000101 ORTHO05D007021 2.2e-62 242.7 171 69.0
Ciclev10016806m.g Citrus clementina HOM05D000101 ORTHO05D007021 2.9e-62 242.3 181 64.6
FvH4_1g18980 Fragaria vesca HOM05D000101 ORTHO05D007021 2.9e-62 242.3 150 75.3
PGSC0003DMG400005919 Solanum tuberosum HOM05D000101 ORTHO05D007021 2.9e-62 242.3 172 68.0
TAR383G0318 Trochodendron aralioides HOM05D000101 ORTHO05D007021 3.8e-62 241.9 169 71.0
Glyma.07G235100 Glycine max HOM05D000101 ORTHO05D007021 6.5e-62 241.1 169 68.0
TAR383G0810 Trochodendron aralioides HOM05D000101 ORTHO05D007021 6.5e-62 241.1 167 71.9
ECA234G3554 Erigeron canadensis HOM05D000101 ORTHO05D007021 1.5e-61 240.0 173 68.8
QL01p016256 Quercus lobata HOM05D000101 ORTHO05D007021 1.5e-61 240.0 171 69.0
Ah.06g194870 Amaranthus hybridus HOM05D000101 ORTHO05D007021 1.9e-61 239.6 167 70.1
Lj6g0006302 Lotus japonicus HOM05D000101 ORTHO05D007021 1.9e-61 239.6 177 65.0
MBI16_g00843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 2.5e-61 239.2 170 67.1
FAN28G0419 Fragaria x ananassa HOM05D000101 ORTHO05D007021 4.2e-61 238.4 150 74.7
unitig_22.g6178 Utricularia gibba HOM05D000101 ORTHO05D007021 4.2e-61 238.4 172 68.0
Eucgr.J00668 Eucalyptus grandis HOM05D000101 ORTHO05D007021 5.5e-61 238.0 181 65.7
Manes.01G177200 Manihot esculenta HOM05D000101 ORTHO05D007021 5.5e-61 238.0 171 67.8
A05p03970 Brassica napus HOM05D000101 ORTHO05D007021 7.2e-61 237.7 171 66.7
Gorai.001G132800 Gossypium raimondii HOM05D000101 ORTHO05D007021 7.2e-61 237.7 171 67.8
TPR.G11957 Trifolium pratense HOM05D000101 ORTHO05D007021 7.2e-61 237.7 172 67.4
EL10Ac4g10078 Beta vulgaris HOM05D000101 ORTHO05D007021 9.4e-61 237.3 171 67.8
BcaC02g12365 Brassica carinata HOM05D000101 ORTHO05D007021 9.4e-61 237.3 171 66.1
C04p04720 Brassica napus HOM05D000101 ORTHO05D007021 9.4e-61 237.3 171 66.1
BolC4t22102H Brassica oleracea HOM05D000101 ORTHO05D007021 9.4e-61 237.3 171 66.1
Prupe.4G269700 Prunus persica HOM05D000101 ORTHO05D007021 9.4e-61 237.3 181 65.7
QL01p016239 Quercus lobata HOM05D000101 ORTHO05D007021 9.4e-61 237.3 171 68.4
A04p33060 Brassica napus HOM05D000101 ORTHO05D007021 1.2e-60 236.9 177 66.1
BraA04t18766Z Brassica rapa HOM05D000101 ORTHO05D007021 1.2e-60 236.9 177 66.1
CsaV3_6G038720 Cucumis sativus L. HOM05D000101 ORTHO05D007021 1.2e-60 236.9 194 60.3
Duzib150G0203 Durio zibethinus HOM05D000101 ORTHO05D007021 1.2e-60 236.9 171 66.7
Duzib150G0818 Durio zibethinus HOM05D000101 ORTHO05D007021 1.2e-60 236.9 171 66.7
Glyma.07G235000 Glycine max HOM05D000101 ORTHO05D007021 1.2e-60 236.9 169 66.3
Lj6g0007250 Lotus japonicus HOM05D000101 ORTHO05D007021 1.6e-60 236.5 177 64.4
COL.COLO4_33246 Corchorus olitorius HOM05D000101 ORTHO05D007021 2.1e-60 236.1 171 67.3
ClCG02G022620 Citrullus lanatus HOM05D000101 ORTHO05D007021 2.7e-60 235.7 150 72.7
Carub.0004s2629 Capsella rubella HOM05D000101 ORTHO05D007021 4.7e-60 235.0 177 63.8
PGR119G0271 Punica granatum HOM05D000101 ORTHO05D007021 4.7e-60 235.0 182 65.9
Sp4g25830 Schrenkiella parvula HOM05D000101 ORTHO05D007021 4.7e-60 235.0 184 62.5
Thecc.09G252400 Theobroma cacao HOM05D000101 ORTHO05D007021 4.7e-60 235.0 178 65.7
BraA05t19385Z Brassica rapa HOM05D000101 ORTHO05D007021 6.1e-60 234.6 171 65.5
CARHR138950 Cardamine hirsuta HOM05D000101 ORTHO05D007021 6.1e-60 234.6 177 64.4
AT2G43760 Arabidopsis thaliana HOM05D000101 ORTHO05D007021 8.0e-60 234.2 178 62.9
Duzib170G0394 Durio zibethinus HOM05D000101 ORTHO05D007021 8.0e-60 234.2 167 68.3
AL4G42630 Arabidopsis lyrata HOM05D000101 ORTHO05D007021 1.0e-59 233.8 178 62.9
Thhalv10001567m.g Eutrema salsugineum HOM05D000101 ORTHO05D007021 1.0e-59 233.8 150 71.3
Nn2g10490 Nelumbo nucifera HOM05D000101 ORTHO05D007021 1.4e-59 233.4 148 74.3
MELO3C014535.2 Cucumis melo HOM05D000101 ORTHO05D007021 3.0e-59 232.3 185 62.7
Aa31LG1G25480 Aethionema arabicum HOM05D000101 ORTHO05D007021 4.0e-59 231.9 177 63.3
Ca_25981_v3 Cicer arietinum L. HOM05D000101 ORTHO05D007021 4.0e-59 231.9 169 68.0
Gohir.D08G019100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 4.0e-59 231.9 171 66.1
Gorai.004G013600 Gossypium raimondii HOM05D000101 ORTHO05D007021 4.0e-59 231.9 171 66.1
AUR62000226 Chenopodium quinoa HOM05D000101 ORTHO05D007021 5.2e-59 231.5 169 66.9
Psat5g198640 Pisum sativum HOM05D000101 ORTHO05D007021 6.7e-59 231.1 180 64.4
Sed0019464 Sechium edule HOM05D000101 ORTHO05D007021 6.7e-59 231.1 179 62.6
THA.LOC104808404 Tarenaya hassleriana HOM05D000101 ORTHO05D007021 8.8e-59 230.7 175 64.0
Potri.001G272100 Populus trichocarpa HOM05D000101 ORTHO05D007021 4.4e-58 228.4 168 64.9
PSO675G1036 Papaver somniferum HOM05D000101 ORTHO05D007021 1.7e-57 226.5 170 66.5
Medtr8g036270 Medicago truncatula HOM05D000101 ORTHO05D007021 4.8e-57 224.9 174 62.1
Medtr3g041720 Medicago truncatula HOM05D000101 ORTHO05D007021 1.1e-56 223.8 179 62.6
PSO017G1758 Papaver somniferum HOM05D000101 ORTHO05D007021 1.4e-56 223.4 170 64.7
Gohir.A08G009100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.8e-56 223.0 171 64.3
MBI15_g46843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 1.2e-55 220.3 167 62.9
CDE04G1472 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 7.7e-55 217.6 181 59.1
CDE06G1918 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 1.7e-54 216.5 181 58.6
SEGI_13887 Sequoiadendron giganteum HOM05D000101 ORTHO05D007021 2.7e-52 209.1 170 62.4
ATR0626G326 Amborella trichopoda HOM05D000101 ORTHO05D007021 6.8e-51 204.5 166 63.3
HPP92_017376 Vanilla planifolia HOM05D000101 ORTHO05D007021 9.8e-50 200.7 169 58.0
BcaC02g07150 Brassica carinata HOM05D000101 ORTHO05D007021 6.3e-49 198.0 177 58.8
Mapoly0016s0014 Marchantia polymorpha HOM05D000101 ORTHO05D007021 3.1e-48 195.7 149 63.1
SHI24924 Sapria himalayana HOM05D000101 ORTHO05D007021 2.3e-46 189.5 150 61.3
Lsat_1_v5_gn_5_88140 Lactuca sativa HOM05D000101 ORTHO05D007021 2.9e-46 189.1 169 58.0
Os02g0140300 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 6.6e-46 188.0 173 56.1
SMO119G0082 Selaginella moellendorffii HOM05D000101 ORTHO05D007021 2.1e-44 183.0 150 59.3
Gohir.D07G123100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.4e-43 180.3 123 69.1
Zm00001eb208120 Zea mays HOM05D000101 ORTHO05D007021 1.4e-43 180.3 166 55.4
AUR62006572 Chenopodium quinoa HOM05D000101 ORTHO05D007021 1.2e-42 177.2 181 53.0
AagrBONN_evm.TU.Sc2ySwM_228.724 Anthoceros agrestis HOM05D000101 ORTHO05D007021 3.4e-42 175.6 151 55.0
Gohir.A07G118800 Gossypium hirsutum HOM05D000101 ORTHO05D007021 7.5e-42 174.5 122 67.2
Pp3c13_8000 Physcomitrium patens HOM05D000101 ORTHO05D007021 9.8e-42 174.1 161 55.3
Atru.chr5.404 Acer truncatum HOM05D000101 ORTHO05D007021 7.3e-37 157.9 117 67.5
Aqoxy102s002 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 4.7e-36 155.2 110 68.2
Cre07.g322250 Chlamydomonas reinhardtii HOM05D000101 ORTHO05D007021 4.9e-33 145.2 129 51.2
Oeu046204.1 Olea europaea HOM05D000101 ORTHO05D007021 3.2e-32 142.5 91 74.7
CBR_g72677 Chara braunii HOM05D000101 ORTHO05D007021 1.7e-30 136.7 145 46.9
Atru.chr3.2842 Acer truncatum HOM05D000101 ORTHO05D007021 1.2e-28 130.6 82 73.2
MCO04G049 Micromonas commoda HOM05D000101 ORTHO05D007021 2.1e-28 129.8 133 46.6
Sabra16G0167400 Salix brachista HOM05D000101 ORTHO05D007021 8.9e-27 124.4 168 44.6
BcaC01g02229 Brassica carinata HOM05D000101 ORTHO05D007021 5.8e-26 121.7 146 45.2
C04p70760 Brassica napus HOM05D000101 ORTHO05D007021 3.2e-24 115.9 177 41.2
BolC4t28578H Brassica oleracea HOM05D000101 ORTHO05D007021 3.2e-24 115.9 177 41.2
PRCOL_00006009 Prasinoderma coloniale HOM05D000101 ORTHO05D007021 3.9e-22 109.0 161 40.4
C03p67630 Brassica napus HOM05D000101 ORTHO05D007021 3.6e-20 102.4 146 41.1
BolSC21t60259H Brassica oleracea HOM05D000101 ORTHO05D007021 3.6e-20 102.4 146 41.1
GSVIVG01027252001 Vitis vinifera HOM05D000101 ORTHO05D007021 1.2e-18 97.4 51 84.3
BcaB02g08903 Brassica carinata HOM05D005622 ORTHO05D002854 4.4e-18 95.5 71 64.8
Cfa024344 Carpinus fangiana HOM05D000101 ORTHO05D007021 1.9e-16 90.1 120 38.3
BcaB02g08904 Brassica carinata HOM05D005622 ORTHO05D002854 4.6e-15 85.5 61 67.2
Os02g0517366 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 7.1e-08 61.6 55 50.9


User provided reference genes

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