Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 3.8e-91 338.2 174 100.0
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 1.4e-69 266.5 137 100.0
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 1.4e-69 266.5 137 100.0
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 1.4e-69 266.5 137 100.0
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 1.2e-68 263.5 137 98.5
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 7.2e-66 254.2 153 88.9
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 7.2e-66 254.2 153 88.9
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 2.1e-65 252.7 148 90.5
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 3.9e-64 248.4 148 88.5
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 8.7e-64 247.3 149 87.9
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 1.9e-63 246.1 153 86.3
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 7.4e-63 244.2 170 75.3
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 9.7e-63 243.8 185 75.1
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 1.3e-62 243.4 157 80.3
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 3.7e-62 241.9 146 85.6
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 3.7e-62 241.9 146 85.6
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 6.3e-62 241.1 148 83.8
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 8.2e-62 240.7 148 84.5
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 1.1e-61 240.4 150 85.3
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 1.4e-61 240.0 147 83.0
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 1.4e-61 240.0 149 83.2
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 1.4e-61 240.0 145 86.2
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 9.1e-61 237.3 148 81.1
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 9.1e-61 237.3 150 81.3
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 1.2e-60 236.9 151 82.8
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 2.0e-60 236.1 150 82.7
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 2.6e-60 235.7 147 81.6
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 3.4e-60 235.3 144 84.0
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 3.4e-60 235.3 150 82.0
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 3.4e-60 235.3 151 80.8
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 5.9e-60 234.6 149 81.2
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 5.9e-60 234.6 149 81.2
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 7.7e-60 234.2 144 85.4
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 7.7e-60 234.2 150 82.7
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 1.0e-59 233.8 152 81.6
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 1.3e-59 233.4 153 81.0
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 1.7e-59 233.0 164 77.4
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 1.7e-59 233.0 147 82.3
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 2.9e-59 232.3 148 81.8
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 3.8e-59 231.9 147 83.0
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 5.0e-59 231.5 149 81.2
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 5.0e-59 231.5 149 81.2
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 6.5e-59 231.1 146 82.9
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 8.5e-59 230.7 162 74.7
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 1.1e-58 230.3 148 81.1
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 1.1e-58 230.3 146 82.2
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.1e-58 230.3 150 79.3
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 1.1e-58 230.3 147 77.6
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 1.9e-58 229.6 149 80.5
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 1.9e-58 229.6 148 81.8
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 1.9e-58 229.6 147 79.6
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 3.2e-58 228.8 151 78.1
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 3.2e-58 228.8 148 80.4
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 5.5e-58 228.0 149 79.9
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 7.2e-58 227.6 151 80.1
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 7.2e-58 227.6 148 79.1
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 7.2e-58 227.6 150 76.0
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 1.2e-57 226.9 164 76.2
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 1.2e-57 226.9 144 79.2
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 1.2e-57 226.9 144 79.2
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 1.2e-57 226.9 150 80.0
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 1.6e-57 226.5 147 78.2
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 2.1e-57 226.1 115 98.3
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 2.7e-57 225.7 153 76.5
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 3.6e-57 225.3 147 77.6
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 3.6e-57 225.3 146 79.5
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 4.7e-57 224.9 147 77.6
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 4.7e-57 224.9 150 80.0
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 4.7e-57 224.9 150 75.3
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 7.9e-57 224.2 145 82.8
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 1.4e-56 223.4 149 80.5
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 1.8e-56 223.0 152 76.3
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 1.8e-56 223.0 152 76.3
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 2.3e-56 222.6 149 77.2
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 2.3e-56 222.6 148 76.4
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 3.9e-56 221.9 150 78.0
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 5.1e-56 221.5 148 77.7
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 6.7e-56 221.1 151 75.5
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 8.8e-56 220.7 157 76.4
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 8.8e-56 220.7 158 72.2
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 1.1e-55 220.3 150 76.7
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 2.0e-55 219.5 149 77.2
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 2.0e-55 219.5 151 77.5
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 2.0e-55 219.5 151 77.5
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 2.0e-55 219.5 153 77.1
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 2.0e-55 219.5 147 76.9
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 2.6e-55 219.2 147 75.5
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 3.3e-55 218.8 149 74.5
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 3.3e-55 218.8 143 81.1
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 5.7e-55 218.0 150 76.7
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 9.7e-55 217.2 148 76.4
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 9.7e-55 217.2 147 75.5
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 1.3e-54 216.9 149 77.9
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 1.7e-54 216.5 147 76.9
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 2.8e-54 215.7 145 77.2
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 3.7e-54 215.3 147 76.2
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 4.8e-54 214.9 148 73.6
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 6.3e-54 214.5 146 74.7
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 6.3e-54 214.5 148 73.0
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 6.3e-54 214.5 147 74.1
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 1.4e-53 213.4 146 74.7
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 1.4e-53 213.4 145 79.3
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 2.4e-53 212.6 147 72.8
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 2.4e-53 212.6 165 67.9
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 4.1e-53 211.8 142 76.1
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 5.3e-53 211.5 158 70.3
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 9.1e-53 210.7 147 72.1
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 9.1e-53 210.7 149 73.2
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 1.2e-52 210.3 145 73.8
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.2e-52 210.3 148 75.0
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 1.5e-52 209.9 145 74.5
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 2.0e-52 209.5 145 73.8
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 3.4e-52 208.8 145 73.1
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 5.9e-52 208.0 150 74.0
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 5.9e-52 208.0 122 87.7
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 7.7e-52 207.6 145 72.4
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 7.7e-52 207.6 145 72.4
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 7.7e-52 207.6 162 70.4
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 7.7e-52 207.6 148 70.9
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 1.0e-51 207.2 142 74.6
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 1.7e-51 206.5 147 71.4
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 1.7e-51 206.5 143 76.2
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 2.9e-51 205.7 148 76.4
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 1.4e-50 203.4 145 73.1
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 5.5e-50 201.4 148 69.6
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 2.1e-49 199.5 148 74.3
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 2.7e-49 199.1 148 72.3
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 3.0e-48 195.7 149 69.8
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 7.4e-47 191.0 122 81.1
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 9.7e-47 190.7 146 69.2
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 1.7e-46 189.9 134 76.1
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 2.8e-46 189.1 125 79.2
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 1.1e-45 187.2 150 71.3
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 1.8e-45 186.4 148 64.9
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 2.4e-45 186.0 123 78.9
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 5.3e-45 184.9 149 61.1
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 9.1e-45 184.1 143 72.7
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 5.9e-44 181.4 121 78.5
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 1.8e-40 169.9 105 81.0
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 2.3e-40 169.5 101 85.1
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 5.2e-40 168.3 150 60.0
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 4.8e-38 161.8 144 61.8
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 6.3e-38 161.4 101 82.2
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 5.3e-37 158.3 101 77.2
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 1.6e-36 156.8 172 54.7
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 2.0e-36 156.4 96 83.3
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 7.7e-36 154.5 106 75.5
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 9.4e-34 147.5 90 84.4
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 4.7e-33 145.2 93 80.6
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 2.3e-32 142.9 83 85.5
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 1.0e-27 127.5 82 81.7
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 1.6e-25 120.2 153 54.2
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 3.6e-25 119.0 116 61.2
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 2.3e-24 116.3 68 86.8
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 2.4e-21 106.3 103 53.4
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 5.0e-19 98.6 63 81.0
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 2.5e-18 96.3 139 40.3
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 9.5e-18 94.4 164 34.1
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 6.6e-11 71.6 76 55.3
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 9.5e-10 67.8 174 29.3
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 2.8e-09 66.2 68 58.8
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 2.8e-09 66.2 88 51.1
Sopen04g030300 Solanum pennellii HOM05D004280 ORTHO05D005059 1.3e-06 57.4 38 78.9


User provided reference genes

Program Settings