Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 4.6e-110 402.1 375 100.0
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 1.7e-51 207.6 164 68.9
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 2.8e-51 206.8 163 68.7
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 1.5e-49 201.1 127 80.3
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 3.5e-49 199.9 163 67.5
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 7.7e-49 198.7 166 66.3
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 1.3e-48 198.0 163 66.9
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 1.7e-48 197.6 164 67.7
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 6.5e-48 195.7 154 68.2
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 1.1e-47 194.9 164 66.5
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 1.1e-47 194.9 164 66.5
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 1.1e-47 194.9 155 69.0
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 1.5e-47 194.5 165 64.8
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 1.5e-47 194.5 164 64.6
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 1.9e-47 194.1 155 69.0
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 3.2e-47 193.4 168 62.5
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 3.2e-47 193.4 163 63.8
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 9.4e-47 191.8 168 61.9
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 1.2e-46 191.4 160 65.0
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 2.1e-46 190.7 165 63.0
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 2.1e-46 190.7 163 65.0
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 2.7e-46 190.3 154 66.2
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 4.7e-46 189.5 163 64.4
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 4.7e-46 189.5 168 63.1
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 4.7e-46 189.5 157 66.2
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 8.0e-46 188.7 163 63.8
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 8.0e-46 188.7 163 63.8
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 8.0e-46 188.7 163 63.8
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 1.4e-45 188.0 157 65.0
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 1.4e-45 188.0 152 67.8
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 1.4e-45 188.0 156 64.7
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 1.4e-45 188.0 161 62.7
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 1.4e-45 188.0 162 63.0
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 1.8e-45 187.6 157 65.0
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 1.8e-45 187.6 156 64.7
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 2.3e-45 187.2 157 65.6
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 5.2e-45 186.0 155 65.8
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 8.8e-45 185.3 155 66.5
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 8.8e-45 185.3 159 63.5
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 1.5e-44 184.5 158 63.3
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 1.5e-44 184.5 158 63.3
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 1.5e-44 184.5 156 63.5
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 1.5e-44 184.5 161 63.4
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 2.0e-44 184.1 154 64.9
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 2.0e-44 184.1 154 65.6
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 3.3e-44 183.3 165 63.0
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 4.4e-44 183.0 158 62.0
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 4.4e-44 183.0 152 65.1
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 4.4e-44 183.0 153 66.0
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 4.4e-44 183.0 152 64.5
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 5.7e-44 182.6 164 63.4
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 5.7e-44 182.6 167 62.3
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 5.7e-44 182.6 156 64.1
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 7.4e-44 182.2 156 65.4
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 9.7e-44 181.8 159 63.5
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 9.7e-44 181.8 160 61.9
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 1.3e-43 181.4 165 60.6
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 1.3e-43 181.4 165 61.8
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 1.3e-43 181.4 158 64.6
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 1.3e-43 181.4 159 64.8
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 1.7e-43 181.0 161 60.9
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 2.8e-43 180.3 164 62.8
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 3.7e-43 179.9 164 62.8
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 3.7e-43 179.9 152 65.1
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 3.7e-43 179.9 152 65.1
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 3.7e-43 179.9 152 65.1
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 3.7e-43 179.9 155 63.9
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 8.2e-43 178.7 165 62.4
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 8.2e-43 178.7 150 66.0
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 8.2e-43 178.7 150 66.0
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 8.2e-43 178.7 150 66.0
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 8.2e-43 178.7 150 66.0
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 1.1e-42 178.3 161 62.7
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 1.8e-42 177.6 152 63.8
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 1.8e-42 177.6 161 62.7
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 2.4e-42 177.2 163 62.6
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 4.1e-42 176.4 165 61.8
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 4.1e-42 176.4 163 62.6
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 5.3e-42 176.0 156 61.5
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 9.1e-42 175.3 152 63.8
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 2.0e-41 174.1 165 59.4
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 1.3e-40 171.4 154 61.7
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 1.3e-40 171.4 148 63.5
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 1.3e-40 171.4 159 61.6
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 1.3e-40 171.4 158 60.1
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 1.3e-40 171.4 157 62.4
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 1.7e-40 171.0 167 56.9
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 1.7e-40 171.0 148 63.5
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 2.2e-40 170.6 167 58.7
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 2.2e-40 170.6 157 61.8
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 2.9e-40 170.2 164 58.5
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 5.0e-40 169.5 166 58.4
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 5.0e-40 169.5 154 60.4
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 6.5e-40 169.1 156 59.6
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 8.5e-40 168.7 154 61.7
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 1.1e-39 168.3 157 60.5
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 1.1e-39 168.3 163 58.9
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 1.1e-39 168.3 153 61.4
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 1.5e-39 167.9 156 59.6
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 2.5e-39 167.2 152 60.5
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 5.5e-39 166.0 153 60.1
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 7.2e-39 165.6 155 59.4
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 9.4e-39 165.2 164 57.9
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 1.2e-38 164.9 166 56.0
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 1.2e-38 164.9 156 59.6
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 1.6e-38 164.5 151 60.9
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.6e-38 164.5 142 66.2
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 2.1e-38 164.1 161 59.0
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 2.7e-38 163.7 154 60.4
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 4.7e-38 162.9 156 57.1
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 4.7e-38 162.9 156 57.1
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 8.0e-38 162.2 150 58.0
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 1.4e-37 161.4 139 61.2
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 2.3e-37 160.6 150 60.7
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 3.0e-37 160.2 150 60.7
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 5.7e-36 156.0 148 58.8
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 4.8e-35 152.9 127 63.8
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 4.8e-35 152.9 127 63.8
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 4.8e-35 152.9 127 63.8
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 1.4e-34 151.4 126 63.5
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 1.4e-34 151.4 126 63.5
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 4.1e-34 149.8 126 62.7
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 7.0e-34 149.1 125 63.2
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 2.0e-33 147.5 122 67.2
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 3.5e-33 146.7 154 55.2
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 3.5e-33 146.7 124 62.9
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 5.9e-33 146.0 125 62.4
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 2.5e-31 140.6 125 60.0
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 9.4e-31 138.7 137 58.4
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 1.2e-30 138.3 128 60.9
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 3.6e-30 136.7 122 63.9
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 3.6e-30 136.7 147 55.8
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 3.6e-30 136.7 147 55.8
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 1.0e-29 135.2 109 66.1
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 3.5e-25 120.2 65 89.2
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 7.7e-25 119.0 138 50.0
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 1.0e-24 118.6 66 87.9
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 3.3e-23 113.6 65 83.1
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 3.3e-23 113.6 65 83.1
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 3.3e-23 113.6 65 83.1
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 3.3e-23 113.6 65 83.1
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 3.3e-23 113.6 65 83.1
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 3.3e-23 113.6 65 83.1
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 3.3e-23 113.6 68 83.8
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 7.2e-23 112.5 68 80.9
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 2.1e-22 110.9 65 81.5
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 2.1e-22 110.9 65 81.5
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 2.1e-22 110.9 65 81.5
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 2.1e-22 110.9 61 90.2
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 2.8e-22 110.5 65 81.5
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 4.0e-21 106.7 65 78.5
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 6.8e-21 105.9 65 76.9
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 6.8e-21 105.9 60 85.0
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 6.8e-21 105.9 60 85.0
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 5.7e-20 102.8 65 75.4
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 1.7e-19 101.3 65 73.8
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 1.7e-19 101.3 107 54.2
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 9.2e-18 95.5 60 80.0
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 1.0e-16 92.0 122 45.9
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 2.3e-16 90.9 99 54.5
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 5.0e-16 89.7 49 87.8
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 5.6e-15 86.3 103 48.5
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 3.6e-14 83.6 54 75.9
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 6.2e-14 82.8 56 75.0
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 4.4e-12 76.6 98 45.9
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 5.8e-12 76.3 51 72.5
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 3.2e-10 70.5 108 45.4
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 9.2e-10 68.9 51 62.7
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 1.6e-09 68.2 120 43.3
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 3.5e-09 67.0 40 85.0
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 5.0e-08 63.2 59 45.8


User provided reference genes

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