Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold138G35322 Striga asiatica HOM05D004016 ORTHO05D004732 1.0e-146 523.5 283 100.0
SGA_v2.0_scaffold1G00497 Striga asiatica HOM05D004016 ORTHO05D004732 3.0e-82 309.3 231 78.4
Migut.D00318 Erythranthe guttata HOM05D004016 ORTHO05D004732 4.7e-59 232.3 230 58.7
MSTRG.21548 Avicennia marina HOM05D004016 ORTHO05D004732 1.4e-55 220.7 232 56.5
Cc01_g19290 Coffea canephora HOM05D004016 ORTHO05D004732 1.7e-48 197.2 245 51.8
MSTRG.18246 Avicennia marina HOM05D004016 ORTHO05D004732 1.4e-47 194.1 185 58.9
Oeu040656.1 Olea europaea HOM05D004016 ORTHO05D004732 2.3e-45 186.8 237 49.8
Lj2E1169T0 Lonicera japonica HOM05D004016 ORTHO05D004732 5.1e-45 185.7 242 50.4
Oeu028065.1 Olea europaea HOM05D004016 ORTHO05D004732 3.3e-44 183.0 236 49.6
Dinv32914 Davidia involucrata HOM05D004016 ORTHO05D004732 5.6e-44 182.2 194 57.2
Migut.N02038 Erythranthe guttata HOM05D004016 ORTHO05D004732 4.0e-42 176.0 186 53.8
Hma1.2p1_0667F.1_g199710 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 9.0e-42 174.9 240 50.0
Solyc09g065380.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 4.5e-41 172.6 197 54.8
PGSC0003DMG400019358 Solanum tuberosum HOM05D004016 ORTHO05D004732 9.9e-41 171.4 198 54.5
Sopen09g027150 Solanum pennellii HOM05D004016 ORTHO05D004732 3.8e-40 169.5 197 54.3
Hma1.2p1_0822F.1_g224340 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 1.4e-39 167.5 195 53.3
Duzib138G0182 Durio zibethinus HOM05D004016 ORTHO05D004732 2.4e-39 166.8 240 48.8
CAN.G1549.22 Capsicum annuum HOM05D004016 ORTHO05D004732 3.2e-39 166.4 204 50.0
Oeu025739.1 Olea europaea HOM05D004016 ORTHO05D004732 7.1e-39 165.2 192 53.6
COL.COLO4_09066 Corchorus olitorius HOM05D004016 ORTHO05D004732 2.1e-38 163.7 239 46.4
MSTRG.17454 Avicennia marina HOM05D004016 ORTHO05D004732 3.5e-38 162.9 185 53.5
CAN.G1549.21 Capsicum annuum HOM05D004016 ORTHO05D004732 6.0e-38 162.2 204 49.0
vmacro14911 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 7.9e-38 161.8 220 50.5
FvH4_2g23281 Fragaria vesca HOM05D004016 ORTHO05D004732 1.3e-37 161.0 198 51.0
FAN24G3262 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.3e-37 161.0 198 50.5
Gohir.A08G065500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 2.3e-37 160.2 241 46.9
CAN.G1549.11 Capsicum annuum HOM05D004016 ORTHO05D004732 5.1e-37 159.1 201 47.8
Gorai.004G078400 Gossypium raimondii HOM05D004016 ORTHO05D004732 5.1e-37 159.1 241 45.6
Nitab4.5_0002928g0010 Nicotiana tabacum HOM05D004016 ORTHO05D004732 5.1e-37 159.1 188 52.7
Gohir.D08G074000 Gossypium hirsutum HOM05D004016 ORTHO05D004732 8.7e-37 158.3 241 45.6
MD03G1262100 Malus domestica HOM05D004016 ORTHO05D004732 1.5e-36 157.5 195 53.3
Ah.02g110900 Amaranthus hybridus HOM05D004016 ORTHO05D004732 1.9e-36 157.1 200 50.0
Prupe.8G238400 Prunus persica HOM05D004016 ORTHO05D004732 1.9e-36 157.1 193 52.8
Duzib133G1129 Durio zibethinus HOM05D004016 ORTHO05D004732 4.3e-36 156.0 244 46.7
FAN20G3152 Fragaria x ananassa HOM05D004016 ORTHO05D004732 5.6e-36 155.6 196 49.5
Thecc.01G275600 Theobroma cacao HOM05D004016 ORTHO05D004732 7.4e-36 155.2 246 46.3
Sopen06g035580 Solanum pennellii HOM05D004016 ORTHO05D004732 9.6e-36 154.8 192 49.5
Haze_04687 Corylus avellana HOM05D004016 ORTHO05D004732 1.3e-35 154.5 198 50.5
Solyc06g084200.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 2.8e-35 153.3 201 49.3
Lj1C48T4 Lonicera japonica HOM05D004016 ORTHO05D004732 3.7e-35 152.9 238 45.4
Peaxi162Scf00783g00017 Petunia axillaris HOM05D004016 ORTHO05D004732 3.7e-35 152.9 205 47.3
Nitab4.5_0008064g0020 Nicotiana tabacum HOM05D004016 ORTHO05D004732 4.8e-35 152.5 187 49.7
Nitab4.5_0005172g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 6.2e-35 152.1 199 48.7
PGSC0003DMG400020056 Solanum tuberosum HOM05D004016 ORTHO05D004732 6.2e-35 152.1 201 46.3
FAN15G1959 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.4e-34 151.0 234 44.4
FAN27G2694 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.8e-34 150.6 178 52.2
MD11G1282800 Malus domestica HOM05D004016 ORTHO05D004732 1.8e-34 150.6 177 52.5
Rhsim01G0273500 Rhododendron simsii HOM05D004016 ORTHO05D004732 2.4e-34 150.2 230 47.8
Cfa006163 Carpinus fangiana HOM05D004016 ORTHO05D004732 6.9e-34 148.7 198 49.0
TAR633G2817 Trochodendron aralioides HOM05D004016 ORTHO05D004732 1.2e-33 147.9 191 51.3
arahy.Tifrunner.gnm1.ann1.256EAD Arachis hypogaea HOM05D004016 ORTHO05D004732 1.5e-33 147.5 197 48.2
EL10Ac5g10544 Beta vulgaris HOM05D004016 ORTHO05D004732 1.5e-33 147.5 195 48.7
AUR62028601 Chenopodium quinoa HOM05D004016 ORTHO05D004732 2.0e-33 147.1 185 49.2
Manes.05G079900 Manihot esculenta HOM05D004016 ORTHO05D004732 2.0e-33 147.1 198 46.0
Manes.01G206100 Manihot esculenta HOM05D004016 ORTHO05D004732 2.6e-33 146.7 198 50.5
Ca_09744_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 3.4e-33 146.4 189 49.7
Ciclev10022155m.g Citrus clementina HOM05D004016 ORTHO05D004732 3.4e-33 146.4 202 50.0
Gohir.A11G124100 Gossypium hirsutum HOM05D004016 ORTHO05D004732 4.5e-33 146.0 232 44.8
RcHm_v2.0_Chr6g0290651 Rosa chinensis HOM05D004016 ORTHO05D004732 4.5e-33 146.0 193 48.7
Atru.chr5.1471 Acer truncatum HOM05D004016 ORTHO05D004732 2.9e-32 143.3 233 45.9
Potri.002G050900 Populus trichocarpa HOM05D004016 ORTHO05D004732 2.9e-32 143.3 205 47.3
Nitab4.5_0009529g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 4.9e-32 142.5 170 49.4
Sc05g0001440 Simmondsia chinensis HOM05D004016 ORTHO05D004732 1.1e-31 141.4 219 44.7
Actinidia21126 Actinidia chinensis HOM05D004016 ORTHO05D004732 1.9e-31 140.6 195 49.2
Cpa.g.sc487.4 Carica papaya HOM05D004016 ORTHO05D004732 2.4e-31 140.2 246 43.1
Lsat_1_v5_gn_8_56660 Lactuca sativa HOM05D004016 ORTHO05D004732 3.2e-31 139.8 250 42.8
Potri.005G211400 Populus trichocarpa HOM05D004016 ORTHO05D004732 5.5e-31 139.0 202 48.0
TWI18G0383 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 5.5e-31 139.0 226 46.9
ClCG07G000350 Citrullus lanatus HOM05D004016 ORTHO05D004732 2.1e-30 137.1 218 44.0
Sabra02G0041700 Salix brachista HOM05D004016 ORTHO05D004732 2.1e-30 137.1 205 47.3
TWI12G1445 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 2.1e-30 137.1 223 43.9
HanXRQChr04g0118991 Helianthus annuus HOM05D004016 ORTHO05D004732 3.5e-30 136.3 247 42.5
Sc17g0001350 Simmondsia chinensis HOM05D004016 ORTHO05D004732 3.5e-30 136.3 186 48.4
Gorai.004G216600 Gossypium raimondii HOM05D004016 ORTHO05D004732 7.9e-30 135.2 238 42.0
Eucgr.H01463 Eucalyptus grandis HOM05D004016 ORTHO05D004732 1.0e-29 134.8 235 43.0
Oeu013891.1 Olea europaea HOM05D004016 ORTHO05D004732 1.0e-29 134.8 160 51.2
Gohir.A08G186500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 2.3e-29 133.7 232 42.2
Hund02825 Selenicereus undatus HOM05D004016 ORTHO05D004732 2.3e-29 133.7 243 43.6
Gohir.D08G204600 Gossypium hirsutum HOM05D004016 ORTHO05D004732 3.0e-29 133.3 232 42.2
Peaxi162Scf01248g00010 Petunia axillaris HOM05D004016 ORTHO05D004732 5.1e-29 132.5 180 45.0
Gorai.007G138300 Gossypium raimondii HOM05D004016 ORTHO05D004732 6.7e-29 132.1 233 43.8
CsaV3_6G037200 Cucumis sativus L. HOM05D004016 ORTHO05D004732 8.7e-29 131.7 174 48.9
Lalb_Chr02g0142631 Lupinus albus HOM05D004016 ORTHO05D004732 8.7e-29 131.7 186 47.3
CiPaw.08G107200 Carya illinoinensis HOM05D004016 ORTHO05D004732 1.9e-28 130.6 176 46.6
Glyma.10G027800 Glycine max HOM05D004016 ORTHO05D004732 1.9e-28 130.6 239 41.0
Gohir.D11G129300 Gossypium hirsutum HOM05D004016 ORTHO05D004732 2.5e-28 130.2 232 42.2
Lj1g0004863 Lotus japonicus HOM05D004016 ORTHO05D004732 2.5e-28 130.2 178 46.6
Lj5g0005099 Lotus japonicus HOM05D004016 ORTHO05D004732 2.5e-28 130.2 185 44.3
LjContig00056g0010505 Lotus japonicus HOM05D004016 ORTHO05D004732 2.5e-28 130.2 178 46.6
Thhalv10028968m.g Eutrema salsugineum HOM05D004016 ORTHO05D004732 3.3e-28 129.8 240 40.0
THA.LOC104801244 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 3.3e-28 129.8 204 44.1
unitig_0.g129 Utricularia gibba HOM05D004016 ORTHO05D004732 3.3e-28 129.8 136 52.9
Oeu034146.1 Olea europaea HOM05D004016 ORTHO05D004732 4.3e-28 129.4 168 46.4
VMungo1383G1854 Vigna mungo HOM05D004016 ORTHO05D004732 4.3e-28 129.4 192 44.3
Lalb_Chr21g0306401 Lupinus albus HOM05D004016 ORTHO05D004732 7.4e-28 128.6 171 49.7
Hund27940 Selenicereus undatus HOM05D004016 ORTHO05D004732 7.4e-28 128.6 195 47.7
Ca_08613_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 9.6e-28 128.3 200 44.5
Sed0007164 Sechium edule HOM05D004016 ORTHO05D004732 1.6e-27 127.5 191 48.2
TAR636G0684 Trochodendron aralioides HOM05D004016 ORTHO05D004732 1.6e-27 127.5 189 46.6
AT4G02715 Arabidopsis thaliana HOM05D004016 ORTHO05D004732 2.1e-27 127.1 224 40.6
vmacro02591 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 2.1e-27 127.1 206 44.7
TPR.G27140 Trifolium pratense HOM05D004016 ORTHO05D004732 3.7e-27 126.3 171 47.4
Sp6g02620 Schrenkiella parvula HOM05D004016 ORTHO05D004732 6.2e-27 125.6 193 44.0
THA.LOC104825992 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 6.2e-27 125.6 199 47.7
Aqoxy5G00450 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 1.1e-26 124.8 235 42.6
Glyma.02G146200 Glycine max HOM05D004016 ORTHO05D004732 1.1e-26 124.8 176 46.0
Phvul.001G153100 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 1.1e-26 124.8 192 43.2
Psat3g063280 Pisum sativum HOM05D004016 ORTHO05D004732 1.4e-26 124.4 193 45.1
Actinidia24906 Actinidia chinensis HOM05D004016 ORTHO05D004732 1.8e-26 124.0 158 48.7
MELO3C014394.2 Cucumis melo HOM05D004016 ORTHO05D004732 1.8e-26 124.0 175 48.6
Lalb_Chr06g0162891 Lupinus albus HOM05D004016 ORTHO05D004732 1.8e-26 124.0 190 43.2
Aa31LG5G2350 Aethionema arabicum HOM05D004016 ORTHO05D004732 2.4e-26 123.6 239 38.1
Medtr7g095160 Medicago truncatula HOM05D004016 ORTHO05D004732 4.0e-26 122.9 176 46.0
Phvul.007G173300 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 4.0e-26 122.9 190 44.2
CARHR251020 Cardamine hirsuta HOM05D004016 ORTHO05D004732 5.3e-26 122.5 238 39.1
Glyma.03G155700 Glycine max HOM05D004016 ORTHO05D004732 5.3e-26 122.5 235 41.3
VMungo0720G0880 Vigna mungo HOM05D004016 ORTHO05D004732 9.0e-26 121.7 177 45.2
AL6G50300 Arabidopsis lyrata HOM05D004016 ORTHO05D004732 1.2e-25 121.3 224 40.2
Sabra05G0161500 Salix brachista HOM05D004016 ORTHO05D004732 1.2e-25 121.3 202 44.6
Carub.0006s3440 Capsella rubella HOM05D004016 ORTHO05D004732 4.5e-25 119.4 224 39.3
DCAR_002723 Daucus carota HOM05D004016 ORTHO05D004732 4.5e-25 119.4 253 37.9
Rhsim13G0026600 Rhododendron simsii HOM05D004016 ORTHO05D004732 5.8e-25 119.0 206 42.2
PGR044G0005 Punica granatum HOM05D004016 ORTHO05D004732 1.3e-24 117.9 172 47.1
BcaB01g02015 Brassica carinata HOM05D004016 ORTHO05D004732 6.5e-24 115.5 237 38.8
QL12p021105 Quercus lobata HOM05D004016 ORTHO05D004732 6.5e-24 115.5 186 46.2
DCAR_018429 Daucus carota HOM05D004016 ORTHO05D004732 8.4e-24 115.2 262 36.3
Psat6g059840 Pisum sativum HOM05D004016 ORTHO05D004732 1.9e-23 114.0 167 43.7
PSO761G0274 Papaver somniferum HOM05D004016 ORTHO05D004732 2.5e-23 113.6 164 48.2
ECA236G1435 Erigeron canadensis HOM05D004016 ORTHO05D004732 4.2e-23 112.8 231 39.8
Glyma.19G157800 Glycine max HOM05D004016 ORTHO05D004732 9.3e-23 111.7 191 44.0
BcaB05g23659 Brassica carinata HOM05D004016 ORTHO05D004732 1.0e-21 108.2 241 36.5
TPR.G24294 Trifolium pratense HOM05D004016 ORTHO05D004732 3.0e-21 106.7 212 37.7
BcaC04g24008 Brassica carinata HOM05D004016 ORTHO05D004732 3.9e-21 106.3 209 38.8
BolC9t53149H Brassica oleracea HOM05D004016 ORTHO05D004732 3.9e-21 106.3 209 38.8
C09p02200 Brassica napus HOM05D004016 ORTHO05D004732 5.7e-20 102.4 207 38.2
A09p02110 Brassica napus HOM05D004016 ORTHO05D004732 7.4e-20 102.1 209 37.8
Aqoxy2G03410 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 9.7e-20 101.7 173 38.2
BraA09t35860Z Brassica rapa HOM05D004016 ORTHO05D004732 9.7e-20 101.7 209 37.8
PSO210G5515 Papaver somniferum HOM05D004016 ORTHO05D004732 9.7e-20 101.7 151 46.4
ECA247G1708 Erigeron canadensis HOM05D004016 ORTHO05D004732 6.3e-19 99.0 143 44.8
Medtr1g071810 Medicago truncatula HOM05D004016 ORTHO05D004732 5.3e-18 95.9 78 62.8
HPP92_013967 Vanilla planifolia HOM05D004016 ORTHO05D004732 9.0e-18 95.1 165 42.4
BcaC03g16166 Brassica carinata HOM05D004016 ORTHO05D004732 2.0e-17 94.0 202 38.1
ClCG09G007200 Citrullus lanatus HOM05D004016 ORTHO05D004732 3.8e-16 89.7 173 41.6
C02p39140 Brassica napus HOM05D004016 ORTHO05D004732 5.0e-16 89.4 206 36.4
Psat1g067520 Pisum sativum HOM05D004016 ORTHO05D004732 1.1e-15 88.2 167 37.7
Os03g0160200 Oryza sativa ssp. japonica HOM05D004016 ORTHO05D004732 1.4e-15 87.8 168 42.3
BolC2t09924H Brassica oleracea HOM05D004016 ORTHO05D004732 2.5e-15 87.0 164 40.2
A02p24930 Brassica napus HOM05D004016 ORTHO05D004732 3.2e-15 86.7 162 39.5
BraA02t07483Z Brassica rapa HOM05D004016 ORTHO05D004732 7.2e-15 85.5 162 39.5
ATR0697G155 Amborella trichopoda HOM05D004016 ORTHO05D004732 9.4e-15 85.1 74 60.8
Zm00001eb047890 Zea mays HOM05D004016 ORTHO05D004732 9.4e-15 85.1 145 42.1
CsaV3_7G027970 Cucumis sativus L. HOM05D004016 ORTHO05D004732 2.1e-14 84.0 120 46.7
Zm00001eb403300 Zea mays HOM05D004016 ORTHO05D004732 2.3e-13 80.5 206 36.9
MELO3C015815.2 Cucumis melo HOM05D004016 ORTHO05D004732 8.8e-13 78.6 120 48.3
A03p30890 Brassica napus HOM05D004016 ORTHO05D004732 4.8e-11 72.8 120 41.7
Gorai.009G456000 Gossypium raimondii HOM05D004016 ORTHO05D004732 2.6e-09 67.0 111 40.5
SEGI_39625 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 2.2e-08 63.9 62 51.6
BcaC01g06738 Brassica carinata HOM05D004016 ORTHO05D004732 8.5e-08 62.0 44 65.9
Sed0001131 Sechium edule HOM05D004016 ORTHO05D004732 2.5e-07 60.5 80 51.2
BcaC01g06736 Brassica carinata HOM05D002144 ORTHO05D002170 9.4e-07 58.5 116 38.8
SMO134G0037 Selaginella moellendorffii HOM05D004016 ORTHO05D004732 2.7e-06 57.0 114 39.5
AagrBONN_evm.TU.Sc2ySwM_362.2843 Anthoceros agrestis HOM05D004016 ORTHO05D004732 4.7e-06 56.2 51 58.8


User provided reference genes

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