Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold138G35254 Striga asiatica HOM05D003606 ORTHO05D004650 1.8e-183 646.4 408 100.0
SGA_v2.0_scaffold1G00601 Striga asiatica HOM05D003606 ORTHO05D004650 2.3e-162 576.2 407 91.2
SalBow4G1900 Salvia bowleyana HOM05D003606 ORTHO05D004650 7.3e-161 571.2 424 77.1
Actinidia02534 Actinidia chinensis HOM05D000009 ORTHO05D004650 2.3e-159 566.2 420 85.0
MSTRG.2635 Avicennia marina HOM05D003606 ORTHO05D004650 2.2e-157 559.7 401 89.8
Ciclev10015115m.g Citrus clementina HOM05D003606 ORTHO05D004650 3.3e-153 545.8 404 74.8
Migut.D00412 Erythranthe guttata HOM05D003606 ORTHO05D004650 1.2e-152 543.9 418 85.2
Dinv09318 Davidia involucrata HOM05D003606 ORTHO05D004650 7.5e-150 534.6 406 85.2
Dinv43413 Davidia involucrata HOM05D003606 ORTHO05D004650 2.2e-149 533.1 406 85.7
Solyc03g112530.3 Solanum lycopersicum HOM05D003606 ORTHO05D004650 9.2e-148 527.7 415 78.6
Sopen03g031590 Solanum pennellii HOM05D003606 ORTHO05D004650 9.2e-148 527.7 415 78.6
PGSC0003DMG400018107 Solanum tuberosum HOM05D003606 ORTHO05D004650 9.2e-148 527.7 415 78.6
Cc02_g29020 Coffea canephora HOM05D003606 ORTHO05D004650 3.5e-147 525.8 400 84.0
Manes.10G139000 Manihot esculenta HOM05D003606 ORTHO05D004650 4.6e-147 525.4 401 85.0
Lj3A990T71 Lonicera japonica HOM05D003606 ORTHO05D004650 1.1e-145 520.8 403 83.1
Ah.10g038660 Amaranthus hybridus HOM05D003606 ORTHO05D004650 1.9e-145 520.0 413 74.8
PGR031G1688 Punica granatum HOM05D003606 ORTHO05D004650 2.5e-145 519.6 410 81.5
GSVIVG01032166001 Vitis vinifera HOM05D003606 ORTHO05D004650 4.3e-145 518.8 404 83.4
Sabra09G0042600 Salix brachista HOM05D003606 ORTHO05D004650 9.5e-145 517.7 401 79.3
Atru.chr11.2590 Acer truncatum HOM05D003606 ORTHO05D004650 1.6e-144 516.9 404 83.4
Nitab4.5_0001284g0090 Nicotiana tabacum HOM05D003606 ORTHO05D004650 2.1e-144 516.5 415 73.3
Potri.009G058000 Populus trichocarpa HOM05D003606 ORTHO05D004650 4.7e-144 515.4 401 82.5
HanXRQChr16g0524861 Helianthus annuus HOM05D003606 ORTHO05D004650 6.2e-144 515.0 403 82.1
Rhsim07G0058400 Rhododendron simsii HOM05D003606 ORTHO05D004650 6.2e-144 515.0 415 82.4
MELO3C023992.2 Cucumis melo HOM05D003606 ORTHO05D004650 1.4e-143 513.8 402 81.6
CsaV3_3G031990 Cucumis sativus L. HOM05D003606 ORTHO05D004650 1.4e-143 513.8 402 81.6
Oeu025828.1 Olea europaea HOM05D003606 ORTHO05D004650 2.3e-143 513.1 532 68.0
TWI32G0899 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 6.8e-143 511.5 404 80.7
CiPaw.05G024300 Carya illinoinensis HOM05D003606 ORTHO05D004650 8.9e-143 511.1 404 82.7
vmacro13693 Vaccinium macrocarpon HOM05D003606 ORTHO05D004650 1.2e-142 510.8 415 82.2
Sc23g0005910 Simmondsia chinensis HOM05D003606 ORTHO05D004650 2.6e-142 509.6 401 80.8
HanXRQChr17g0563081 Helianthus annuus HOM05D003606 ORTHO05D004650 4.4e-142 508.8 407 76.2
Lsat_1_v5_gn_4_31941 Lactuca sativa HOM05D003606 ORTHO05D004650 4.4e-142 508.8 415 81.7
Lj5g0022697 Lotus japonicus HOM05D003606 ORTHO05D004650 4.4e-142 508.8 415 80.2
CAN.G338.7 Capsicum annuum HOM05D003606 ORTHO05D004650 5.8e-142 508.4 416 78.6
TWI34G0860 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 8.4e-141 504.6 404 81.2
CiPaw.05G162700 Carya illinoinensis HOM05D003606 ORTHO05D004650 1.1e-140 504.2 404 80.2
CDE02G3858 Ceratophyllum demersum HOM05D003606 ORTHO05D004650 1.1e-140 504.2 402 80.1
Cpa.g.sc19.249 Carica papaya HOM05D003606 ORTHO05D004650 1.4e-140 503.8 402 70.6
Eucgr.G03357 Eucalyptus grandis HOM05D003606 ORTHO05D004650 1.9e-140 503.4 406 79.6
Phvul.004G092500 Phaseolus vulgaris HOM05D003606 ORTHO05D004650 1.9e-140 503.4 415 79.0
VMungo0464G1676 Vigna mungo HOM05D003606 ORTHO05D004650 5.4e-140 501.9 415 78.8
Sed0024972 Sechium edule HOM05D003606 ORTHO05D004650 1.6e-139 500.4 402 80.6
Prupe.2G020500 Prunus persica HOM05D003606 ORTHO05D004650 2.1e-139 500.0 406 82.0
Glyma.16G165100 Glycine max HOM05D003606 ORTHO05D004650 6.0e-139 498.4 415 78.3
ECA234G3512 Erigeron canadensis HOM05D003606 ORTHO05D004650 7.8e-139 498.0 415 74.5
Thecc.01G407200 Theobroma cacao HOM05D003606 ORTHO05D004650 7.8e-139 498.0 415 79.0
Gohir.A08G142700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 1.0e-138 497.7 415 79.3
Gohir.D08G163700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 1.3e-138 497.3 415 79.3
RcHm_v2.0_Chr1g0317321 Rosa chinensis HOM05D003606 ORTHO05D004650 1.3e-138 497.3 402 74.4
Cfa010803 Carpinus fangiana HOM05D003606 ORTHO05D004650 2.3e-138 496.5 403 80.1
Nn5g28763 Nelumbo nucifera HOM05D003606 ORTHO05D004650 2.3e-138 496.5 398 73.9
Gorai.004G170600 Gossypium raimondii HOM05D003606 ORTHO05D004650 3.0e-138 496.1 415 79.0
Lalb_Chr21g0315701 Lupinus albus HOM05D003606 ORTHO05D004650 1.1e-137 494.2 414 76.8
Duzib138G0203 Durio zibethinus HOM05D003606 ORTHO05D004650 3.3e-137 492.7 402 78.6
ClCG10G012220 Citrullus lanatus HOM05D003606 ORTHO05D004650 5.6e-137 491.9 417 77.5
Haze_03155 Corylus avellana HOM05D003606 ORTHO05D004650 5.6e-137 491.9 402 80.3
FAN01G0800 Fragaria x ananassa HOM05D003606 ORTHO05D004650 3.6e-136 489.2 408 73.0
DCAR_003761 Daucus carota HOM05D003606 ORTHO05D004650 8.1e-136 488.0 406 80.0
FAN03G2659 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.1e-135 487.6 408 72.8
FAN06G2132 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.1e-135 487.6 407 68.8
PSO675G6796 Papaver somniferum HOM05D003606 ORTHO05D004650 1.4e-135 487.3 405 72.3
FvH4_7g01500 Fragaria vesca HOM05D003606 ORTHO05D004650 2.4e-135 486.5 407 73.0
FAN10G3084 Fragaria x ananassa HOM05D003606 ORTHO05D004650 2.4e-135 486.5 408 72.5
COL.COLO4_04879 Corchorus olitorius HOM05D003606 ORTHO05D004650 5.2e-135 485.3 402 77.9
Ca_19553_v3 Cicer arietinum L. HOM05D003606 ORTHO05D004650 2.2e-133 479.9 410 67.8
AUR62023088 Chenopodium quinoa HOM05D003606 ORTHO05D004650 4.9e-133 478.8 423 65.2
AUR62029807 Chenopodium quinoa HOM05D003606 ORTHO05D004650 4.9e-133 478.8 423 65.2
THA.LOC104819092 Tarenaya hassleriana HOM05D003606 ORTHO05D004650 1.1e-132 477.6 402 66.2
Aqoxy2G00153 Aquilegia oxysepala HOM05D003606 ORTHO05D004650 1.9e-132 476.9 406 78.3
ATR0626G036 Amborella trichopoda HOM05D003606 ORTHO05D004650 2.4e-132 476.5 397 67.5
Glyma.02G080600 Glycine max HOM05D003606 ORTHO05D004650 2.4e-132 476.5 399 78.2
MD17G1287700 Malus domestica HOM05D003606 ORTHO05D004650 1.6e-131 473.8 406 79.3
Medtr1g054300 Medicago truncatula HOM05D003606 ORTHO05D004650 6.0e-131 471.9 410 66.3
PSO541G2647 Papaver somniferum HOM05D003606 ORTHO05D004650 7.8e-131 471.5 398 71.4
Nitab4.5_0012005g0010 Nicotiana tabacum HOM05D003606 ORTHO05D004650 6.6e-130 468.4 415 68.7
Psat6g110240 Pisum sativum HOM05D003606 ORTHO05D004650 4.3e-129 465.7 404 66.3
TPR.G14490 Trifolium pratense HOM05D003606 ORTHO05D004650 1.6e-128 463.8 410 66.3
Aa31LG3G9060 Aethionema arabicum HOM05D003606 ORTHO05D004650 3.4e-126 456.1 400 73.0
BcaB05g21983 Brassica carinata HOM05D003606 ORTHO05D004650 1.3e-125 454.1 391 74.9
Thhalv10013442m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 2.2e-125 453.4 399 73.7
Manes.07G008500 Manihot esculenta HOM05D003606 ORTHO05D004650 2.2e-125 453.4 401 77.3
Peaxi162Scf00089g01530 Petunia axillaris HOM05D003606 ORTHO05D004650 2.9e-125 453.0 415 74.9
BcaC03g14497 Brassica carinata HOM05D003606 ORTHO05D004650 3.8e-125 452.6 391 74.7
C02p19350 Brassica napus HOM05D003606 ORTHO05D004650 3.8e-125 452.6 391 74.7
BolC2t08070H Brassica oleracea HOM05D003606 ORTHO05D004650 3.8e-125 452.6 391 74.7
MD02G1305600 Malus domestica HOM05D003606 ORTHO05D004650 3.8e-125 452.6 389 71.7
Os11g0594200 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 4.9e-125 452.2 389 75.8
Sp6g14980 Schrenkiella parvula HOM05D003606 ORTHO05D004650 1.1e-124 451.1 389 74.6
AT5G52820 Arabidopsis thaliana HOM05D003606 ORTHO05D004650 1.6e-123 447.2 393 73.3
SEGI_00890 Sequoiadendron giganteum HOM05D003606 ORTHO05D004650 2.1e-123 446.8 396 69.7
TAR633G2243 Trochodendron aralioides HOM05D003606 ORTHO05D004650 3.5e-123 446.0 518 59.8
A02p11600 Brassica napus HOM05D003606 ORTHO05D004650 7.9e-123 444.9 391 73.9
BraA02t06222Z Brassica rapa HOM05D003606 ORTHO05D004650 7.9e-123 444.9 391 73.9
Os10g0104500 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 5.1e-122 442.2 398 74.6
AL8G27260 Arabidopsis lyrata HOM05D003606 ORTHO05D004650 3.3e-121 439.5 390 72.8
CARHR265750 Cardamine hirsuta HOM05D003606 ORTHO05D004650 5.6e-121 438.7 400 66.5
SHI00285 Sapria himalayana HOM05D003606 ORTHO05D004650 5.6e-121 438.7 426 62.7
Zm00001eb297740 Zea mays HOM05D003606 ORTHO05D004650 5.6e-121 438.7 388 74.0
Carub.0008s1298 Capsella rubella HOM05D003606 ORTHO05D004650 1.6e-120 437.2 389 73.5
arahy.Tifrunner.gnm1.ann1.ZXEF1Z Arachis hypogaea HOM05D003606 ORTHO05D004650 2.8e-120 436.4 417 64.7
Hund21610 Selenicereus undatus HOM05D003606 ORTHO05D004650 3.6e-120 436.0 432 62.7
QL06p005538 Quercus lobata HOM05D003606 ORTHO05D004650 1.5e-118 430.6 364 77.5
arahy.Tifrunner.gnm1.ann1.F9F3MK Arachis hypogaea HOM05D003606 ORTHO05D004650 6.4e-117 425.2 404 73.0
arahy.Tifrunner.gnm1.ann1.V59V4E Arachis hypogaea HOM05D003606 ORTHO05D004650 8.4e-117 424.9 404 72.5
arahy.Tifrunner.gnm1.ann1.GAUK41 Arachis hypogaea HOM05D003606 ORTHO05D004650 1.1e-116 424.5 404 72.8
CANSAT01G2566 Cannabis sativa HOM05D003606 ORTHO05D004650 2.4e-116 423.3 389 73.5
BcaNung04849 Brassica carinata HOM05D003606 ORTHO05D004650 4.8e-112 409.1 403 59.6
BolC9t59770H Brassica oleracea HOM05D003606 ORTHO05D004650 4.8e-112 409.1 403 59.6
C09p70260 Brassica napus HOM05D003606 ORTHO05D004650 1.8e-111 407.1 403 59.6
AagrBONN_evm.TU.Sc2ySwM_344.4930 Anthoceros agrestis HOM05D003606 ORTHO05D004650 1.4e-108 397.5 396 65.2
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 5.5e-108 395.6 430 60.0
BcaB08g35635 Brassica carinata HOM05D003606 ORTHO05D004650 1.6e-107 394.0 404 53.2
Mapoly0082s0085 Marchantia polymorpha HOM05D003606 ORTHO05D004650 2.7e-107 393.3 392 66.1
CBR_g38286 Chara braunii HOM05D003606 ORTHO05D004650 4.6e-107 392.5 395 58.0
SGA_v2.0_scaffold90G27689 Striga asiatica HOM05D003606 ORTHO05D004650 4.6e-107 392.5 314 87.6
PSO541G4704 Papaver somniferum HOM05D003606 ORTHO05D004650 1.5e-105 387.5 392 59.2
Thhalv10025051m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 4.3e-105 386.0 406 54.2
Pp3c1_35350 Physcomitrium patens HOM05D003606 ORTHO05D004650 3.4e-102 376.3 391 63.9
BolC7t45366H Brassica oleracea HOM05D003606 ORTHO05D004650 1.7e-101 374.0 399 53.9
BcaC04g20537 Brassica carinata HOM05D003606 ORTHO05D004650 2.2e-101 373.6 403 53.6
BcaC06g33533 Brassica carinata HOM05D003606 ORTHO05D004650 5.5e-100 369.0 423 51.5
BcaNung04664 Brassica carinata HOM05D003606 ORTHO05D004650 1.0e-98 364.8 403 52.6
A10p29890 Brassica napus HOM05D003606 ORTHO05D004650 7.4e-97 358.6 403 52.9
C07p48580 Brassica napus HOM05D003606 ORTHO05D004650 2.2e-96 357.1 433 49.7
HPP92_026819 Vanilla planifolia HOM05D003606 ORTHO05D004650 6.9e-95 352.1 443 44.2
SMO259G0032 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 7.7e-94 348.6 409 50.9
MCO05G213 Micromonas commoda HOM05D003606 ORTHO05D004650 2.1e-91 340.5 386 52.8
AUR62009405 Chenopodium quinoa HOM05D003606 ORTHO05D004650 3.9e-90 336.3 314 71.0
Hund00228 Selenicereus undatus HOM05D003606 ORTHO05D004650 6.3e-88 328.9 382 54.7
TPR.G7603 Trifolium pratense HOM05D003606 ORTHO05D004650 8.2e-88 328.6 335 61.8
MD09G1280600 Malus domestica HOM05D003606 ORTHO05D004650 1.5e-86 324.3 258 75.2
PRCOL_00003575 Prasinoderma coloniale HOM05D003606 ORTHO05D004650 9.7e-81 305.1 416 49.8
BraA10t45027Z Brassica rapa HOM05D003606 ORTHO05D004650 6.3e-80 302.4 252 68.7
BcaC06g32566 Brassica carinata HOM05D003606 ORTHO05D004650 1.9e-76 290.8 394 44.7
BcaNung05838 Brassica carinata HOM05D003606 ORTHO05D004650 5.5e-76 289.3 384 44.0
COL.COLO4_04880 Corchorus olitorius HOM05D003606 ORTHO05D004650 6.1e-75 285.8 293 79.5
Ca_22822_v3 Cicer arietinum L. HOM05D003606 ORTHO05D000002 2.6e-73 280.4 209 65.1
BraA10t43107Z Brassica rapa HOM05D003606 ORTHO05D004650 3.1e-71 273.5 256 62.1
A10p10270 Brassica napus HOM05D003606 ORTHO05D004650 1.6e-70 271.2 256 62.1
Haze_26363 Corylus avellana HOM05D003606 ORTHO05D004650 2.2e-69 267.3 397 43.6
Cre01.g000600 Chlamydomonas reinhardtii HOM05D003606 ORTHO05D004650 5.2e-58 229.6 398 43.7
HanXRQChr15g0491881 Helianthus annuus HOM05D003606 ORTHO05D004650 1.6e-54 218.0 194 58.8
Sc03g0002540 Simmondsia chinensis HOM05D003606 ORTHO05D004650 3.0e-50 203.8 125 78.4
BolC9t57121H Brassica oleracea HOM05D003606 ORTHO05D004650 5.2e-50 203.0 292 41.1
C09p42410 Brassica napus HOM05D003606 ORTHO05D004650 8.9e-50 202.2 292 41.1
Cfa026891 Carpinus fangiana HOM05D003606 ORTHO05D004650 1.1e-44 185.3 387 38.5
CSS0037178 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 2.8e-43 180.6 98 85.7
AUR62034729 Chenopodium quinoa HOM05D003606 ORTHO05D004650 1.7e-40 171.4 97 81.4
CSS0009389 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 2.2e-40 171.0 81 93.8
Manes.07G009860 Manihot esculenta HOM05D003606 ORTHO05D004650 1.2e-38 165.2 81 90.1
Oeu060950.1 Olea europaea HOM05D003606 ORTHO05D016710 1.3e-37 161.8 183 51.4
SalBow4G2833 Salvia bowleyana HOM05D003606 ORTHO05D004650 8.6e-37 159.1 292 43.5
TAR636G3369 Trochodendron aralioides HOM05D003606 ORTHO05D003127 7.5e-33 146.0 153 52.9
CSS0038697 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D016710 4.1e-31 140.2 69 85.5
BcaC06g33525 Brassica carinata HOM05D003606 ORTHO05D004650 5.6e-28 129.8 97 61.9
BraA10t45028Z Brassica rapa HOM05D003606 ORTHO05D004650 2.1e-27 127.9 81 74.1
MD09G1280700 Malus domestica HOM05D003606 ORTHO05D004650 3.1e-26 124.0 81 72.8
BcaNung04851 Brassica carinata HOM05D003606 ORTHO05D004650 1.2e-25 122.1 95 65.3
BcaC01g02187 Brassica carinata HOM05D003606 ORTHO05D016710 3.4e-25 120.6 120 70.0
Medtr0421s0030 Medicago truncatula HOM05D003606 ORTHO05D004650 7.6e-25 119.4 199 38.2
C02p14020 Brassica napus HOM05D003606 ORTHO05D016710 5.1e-21 106.7 164 35.4
BolC9t57120H Brassica oleracea HOM05D003606 ORTHO05D033191 5.1e-21 106.7 83 60.2
SMO259G0025 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 2.5e-20 104.4 50 88.0
TPR.G39665 Trifolium pratense HOM05D003606 ORTHO05D033191 7.3e-20 102.8 81 58.0
GSVIVG01032170001 Vitis vinifera HOM05D003606 ORTHO05D004650 1.5e-17 95.1 63 68.3
QL06p005531 Quercus lobata HOM05D011240 ORTHO05D014254 1.3e-16 92.0 44 90.9
C09p42400 Brassica napus HOM05D003606 ORTHO05D033191 8.4e-16 89.4 72 55.6
TAR636G2756 Trochodendron aralioides HOM05D003606 ORTHO05D004650 1.1e-15 89.0 43 90.7
COL.COLO4_24393 Corchorus olitorius HOM05D003606 ORTHO05D004650 2.4e-15 87.8 45 82.2
Eucgr.G03346 Eucalyptus grandis HOM05D003606 ORTHO05D004650 2.7e-14 84.3 45 80.0
Hund00229 Selenicereus undatus HOM05D003606 ORTHO05D004650 3.5e-14 84.0 43 83.7
CSS0009074 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 3.0e-13 80.9 40 92.5
CSS0037126 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 3.0e-13 80.9 40 92.5
Eucgr.G03354 Eucalyptus grandis HOM05D003606 ORTHO05D004650 9.6e-12 75.9 45 73.3
BolC2t06237H Brassica oleracea HOM05D003606 ORTHO05D016710 3.6e-11 73.9 140 32.9
Oeu060951.1 Olea europaea HOM05D003606 ORTHO05D004650 3.6e-11 73.9 38 84.2
BolC2t07520H Brassica oleracea HOM05D003606 ORTHO05D016710 4.8e-11 73.6 47 61.7
C03p42670 Brassica napus HOM05D003606 ORTHO05D016710 1.8e-10 71.6 140 32.1
C03p67300 Brassica napus HOM05D003606 ORTHO05D016710 1.8e-10 71.6 140 32.1
BolSC21t60295H Brassica oleracea HOM05D003606 ORTHO05D016710 1.8e-10 71.6 140 32.1
TPR.G8471 Trifolium pratense HOM05D003606 ORTHO05D004650 9.9e-09 65.9 40 70.0
CSS0046585 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 2.4e-07 61.2 55 56.4
SMO361G0390 Selaginella moellendorffii HOM05D002303 ORTHO05D006504 2.1e-06 58.2 69 43.5
CANSAT51G0014 Cannabis sativa HOM05D003606 ORTHO05D004650 6.0e-06 56.6 81 39.5
Haze_01483 Corylus avellana HOM05D000526 ORTHO05D000956 7.9e-06 56.2 290 22.1


User provided reference genes

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