Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold138G35211 Striga asiatica HOM05D003718 ORTHO05D004402 0.0e+00 1722.2 880 100.0
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 1.2e-299 1033.1 804 71.4
MSTRG.21485 Avicennia marina HOM05D003718 ORTHO05D004402 8.9e-298 1026.9 804 69.0
Migut.D00439 Erythranthe guttata HOM05D003718 ORTHO05D004402 9.2e-295 1016.9 803 67.7
SalBow4G0483 Salvia bowleyana HOM05D003718 ORTHO05D004402 9.5e-292 1006.9 810 67.3
Oeu052043.2 Olea europaea HOM05D003718 ORTHO05D004402 9.0e-274 947.2 886 60.2
Dinv34637 Davidia involucrata HOM05D003718 ORTHO05D004402 7.6e-265 917.5 804 61.9
Cc01_g18200 Coffea canephora HOM05D003718 ORTHO05D004402 7.9e-262 907.5 803 61.4
Sopen07g005600 Solanum pennellii HOM05D003718 ORTHO05D004402 4.5e-257 891.7 803 60.5
QL09p039591 Quercus lobata HOM05D003718 ORTHO05D004402 6.5e-256 887.9 804 60.4
Solyc05g046330.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 1.6e-254 883.2 804 60.3
Sopen05g027610 Solanum pennellii HOM05D003718 ORTHO05D004402 6.0e-254 881.3 803 60.4
Peaxi162Scf00320g00717 Petunia axillaris HOM05D003718 ORTHO05D004402 1.3e-251 873.6 803 60.6
CSS0040480 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 3.7e-251 872.1 804 60.1
CSS0049010 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 8.2e-251 870.9 804 60.0
Cfa013046 Carpinus fangiana HOM05D003718 ORTHO05D004402 1.8e-250 869.8 800 60.0
Hma1.2p1_0273F.1_g109540 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 1.8e-250 869.8 805 60.1
Actinidia07305 Actinidia chinensis HOM05D003718 ORTHO05D004402 5.3e-250 868.2 804 60.2
CAN.G106.18 Capsicum annuum HOM05D003718 ORTHO05D004402 5.3e-250 868.2 798 59.9
CiPaw.03G266000 Carya illinoinensis HOM05D003718 ORTHO05D004402 3.8e-248 862.1 806 59.3
Solyc07g014700.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 5.0e-248 861.7 738 62.7
CiPaw.04G187700 Carya illinoinensis HOM05D003718 ORTHO05D004402 3.6e-246 855.5 805 58.6
TWI75G1389 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 1.9e-244 849.7 799 58.3
CAN.G54.7 Capsicum annuum HOM05D003718 ORTHO05D004402 4.3e-244 848.6 803 58.3
TWI12G1081 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 7.4e-244 847.8 799 58.6
GSVIVG01028357001 Vitis vinifera HOM05D003718 ORTHO05D004402 2.6e-241 839.3 804 57.5
Duzib211G0290 Durio zibethinus HOM05D003718 ORTHO05D004402 4.5e-241 838.6 800 56.6
TAR633G0796 Trochodendron aralioides HOM05D003718 ORTHO05D004402 5.0e-240 835.1 806 57.4
Manes.12G033700 Manihot esculenta HOM05D003718 ORTHO05D004402 6.5e-240 834.7 784 58.0
vmacro14814 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 6.5e-240 834.7 739 62.1
CANSAT01G0671 Cannabis sativa HOM05D003718 ORTHO05D004402 2.5e-239 832.8 800 57.2
TAR362G0778 Trochodendron aralioides HOM05D003718 ORTHO05D004402 7.2e-239 831.2 805 57.9
Potri.005G226100 Populus trichocarpa HOM05D003718 ORTHO05D004402 2.1e-238 829.7 807 56.8
Thecc.01G255900 Theobroma cacao HOM05D003718 ORTHO05D004402 3.6e-238 828.9 800 56.2
Atru.chr5.1725 Acer truncatum HOM05D003718 ORTHO05D004402 4.6e-238 828.6 800 56.8
Manes.13G035300 Manihot esculenta HOM05D003718 ORTHO05D004402 6.1e-238 828.2 802 57.2
Nitab4.5_0001572g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 1.4e-237 827.0 803 57.7
Duzib133G1085 Durio zibethinus HOM05D003718 ORTHO05D004402 4.4e-236 822.0 800 56.6
Gohir.D07G156100 Gossypium hirsutum HOM05D003718 ORTHO05D004402 4.4e-236 822.0 800 55.9
CsaV3_1G015830 Cucumis sativus L. HOM05D003718 ORTHO05D004402 5.7e-236 821.6 800 56.2
Gorai.001G179000 Gossypium raimondii HOM05D003718 ORTHO05D004402 7.4e-236 821.2 800 55.8
Nitab4.5_0000413g0180 Nicotiana tabacum HOM05D003718 ORTHO05D004402 1.3e-235 820.5 803 57.7
Potri.002G036600 Populus trichocarpa HOM05D003718 ORTHO05D004402 1.7e-235 820.1 800 56.8
Prupe.8G221600 Prunus persica HOM05D003718 ORTHO05D004402 2.8e-235 819.3 802 56.9
Duzib138G1036 Durio zibethinus HOM05D003718 ORTHO05D004402 3.7e-235 818.9 800 56.4
MELO3C025537.2 Cucumis melo HOM05D003718 ORTHO05D004402 8.2e-235 817.8 798 55.9
ECA236G3831 Erigeron canadensis HOM05D003718 ORTHO05D004402 1.1e-234 817.4 804 55.3
Sabra05G0174600 Salix brachista HOM05D003718 ORTHO05D004402 1.4e-234 817.0 823 55.4
MD05G1194900 Malus domestica HOM05D003718 ORTHO05D004402 1.8e-234 816.6 803 56.4
HanXRQChr04g0110491 Helianthus annuus HOM05D003718 ORTHO05D004402 2.4e-234 816.2 740 58.6
DCAR_000921 Daucus carota HOM05D003718 ORTHO05D004402 6.9e-234 814.7 803 55.8
Ciclev10019124m.g Citrus clementina HOM05D003718 ORTHO05D004402 2.6e-233 812.8 787 56.5
Gohir.A07G149800 Gossypium hirsutum HOM05D003718 ORTHO05D004402 4.5e-233 812.0 800 55.6
MD10G1181500 Malus domestica HOM05D003718 ORTHO05D004402 1.3e-232 810.4 805 56.4
Nn1g02814 Nelumbo nucifera HOM05D003718 ORTHO05D004402 3.8e-232 808.9 806 54.8
unitig_22.g5287 Utricularia gibba HOM05D003718 ORTHO05D004402 3.8e-232 808.9 819 55.7
Sed0001928 Sechium edule HOM05D003718 ORTHO05D004402 2.7e-230 802.7 800 55.0
Eucgr.K03255 Eucalyptus grandis HOM05D003718 ORTHO05D004402 4.7e-230 802.0 799 55.7
Gohir.D11G137575 Gossypium hirsutum HOM05D003718 ORTHO05D004402 7.9e-230 801.2 811 54.7
Gorai.007G147600 Gossypium raimondii HOM05D003718 ORTHO05D004402 1.0e-229 800.8 811 54.6
Sabra02G0029600 Salix brachista HOM05D003718 ORTHO05D004402 6.7e-229 798.1 833 54.6
FAN27G0576 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.1e-228 797.3 808 56.1
Gohir.A11G131600 Gossypium hirsutum HOM05D003718 ORTHO05D004402 2.6e-228 796.2 811 54.7
Glyma.03G164400 Glycine max HOM05D003718 ORTHO05D004402 6.3e-227 791.6 803 55.2
Lsat_1_v5_gn_8_92540 Lactuca sativa HOM05D003718 ORTHO05D004402 2.4e-226 789.6 790 54.8
RcHm_v2.0_Chr6g0287811 Rosa chinensis HOM05D003718 ORTHO05D004402 3.5e-225 785.8 800 56.1
FvH4_2g21250 Fragaria vesca HOM05D003718 ORTHO05D004402 1.7e-224 783.5 797 55.3
FAN15G3248 Fragaria x ananassa HOM05D003718 ORTHO05D004402 2.9e-224 782.7 805 54.8
Nn3g19693 Nelumbo nucifera HOM05D003718 ORTHO05D004402 1.1e-223 780.8 806 54.1
FAN24G2691 Fragaria x ananassa HOM05D003718 ORTHO05D004402 5.5e-223 778.5 805 55.0
Glyma.19G165800 Glycine max HOM05D003718 ORTHO05D004402 8.0e-222 774.6 804 54.6
Aqoxy1G01842 Aquilegia oxysepala HOM05D003718 ORTHO05D004402 2.3e-221 773.1 784 53.3
Lalb_Chr21g0313961 Lupinus albus HOM05D003718 ORTHO05D004402 4.0e-221 772.3 802 54.6
Lj5g0026512 Lotus japonicus HOM05D003718 ORTHO05D004402 2.6e-220 769.6 806 54.5
THA.LOC104812416 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 4.4e-220 768.8 797 53.7
Phvul.001G162000 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 1.3e-219 767.3 805 54.0
AUR62013766 Chenopodium quinoa HOM05D003718 ORTHO05D004402 3.7e-219 765.8 799 52.3
PGR031G0689 Punica granatum HOM05D003718 ORTHO05D004402 3.7e-219 765.8 787 54.0
Rhsim01G0262400 Rhododendron simsii HOM05D003718 ORTHO05D004402 3.7e-219 765.8 703 60.5
Ca_09672_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 4.8e-219 765.4 818 53.1
VMungo1383G2169 Vigna mungo HOM05D003718 ORTHO05D004402 1.8e-218 763.5 797 53.7
THA.LOC104806254 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 3.1e-218 762.7 796 53.4
arahy.Tifrunner.gnm1.ann1.FU7SP6 Arachis hypogaea HOM05D003718 ORTHO05D004402 9.1e-218 761.1 813 51.8
arahy.Tifrunner.gnm1.ann1.QXN52H Arachis hypogaea HOM05D003718 ORTHO05D004402 1.6e-217 760.4 807 51.9
Thhalv10024580m.g Eutrema salsugineum HOM05D003718 ORTHO05D004402 2.0e-217 760.0 804 53.4
Lalb_Chr02g0152551 Lupinus albus HOM05D003718 ORTHO05D004402 2.0e-217 760.0 798 53.4
Lj1C68G8 Lonicera japonica HOM05D003718 ORTHO05D004402 7.7e-217 758.1 713 59.5
AL7G32970 Arabidopsis lyrata HOM05D003718 ORTHO05D004402 1.5e-215 753.8 796 53.4
Carub.0007s2028 Capsella rubella HOM05D003718 ORTHO05D004402 4.2e-215 752.3 796 53.4
Glyma.10G038000 Glycine max HOM05D003718 ORTHO05D004402 9.4e-215 751.1 805 53.0
Medtr1g069780 Medicago truncatula HOM05D003718 ORTHO05D004402 1.2e-214 750.7 779 53.5
Psat6g054080 Pisum sativum HOM05D003718 ORTHO05D004402 2.7e-214 749.6 779 53.3
Lsat_1_v5_gn_5_182920 Lactuca sativa HOM05D003718 ORTHO05D004402 6.1e-214 748.4 808 53.3
AT4G21150 Arabidopsis thaliana HOM05D003718 ORTHO05D004402 1.8e-213 746.9 801 53.1
CARHR227730 Cardamine hirsuta HOM05D003718 ORTHO05D004402 3.0e-213 746.1 796 52.9
Phvul.007G191800 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 8.8e-213 744.6 779 53.8
BcaC09g51252 Brassica carinata HOM05D003718 ORTHO05D004402 2.6e-212 743.0 801 52.8
BolC1t01458H Brassica oleracea HOM05D003718 ORTHO05D004402 2.6e-212 743.0 801 52.9
arahy.Tifrunner.gnm1.ann1.EWE7BX Arachis hypogaea HOM05D003718 ORTHO05D004402 1.7e-211 740.3 780 53.6
Sp7g19230 Schrenkiella parvula HOM05D003718 ORTHO05D004402 2.2e-211 740.0 801 52.7
ClCG03G002590 Citrullus lanatus HOM05D003718 ORTHO05D004402 2.4e-210 736.5 800 51.8
arahy.Tifrunner.gnm1.ann1.B1YDGW Arachis hypogaea HOM05D003718 ORTHO05D004402 7.0e-210 734.9 781 53.5
TPR.G5874 Trifolium pratense HOM05D003718 ORTHO05D004402 1.6e-209 733.8 741 54.9
PSO210G5136 Papaver somniferum HOM05D003718 ORTHO05D004402 7.7e-209 731.5 805 51.4
VMungo0720G0687 Vigna mungo HOM05D003718 ORTHO05D004402 1.0e-208 731.1 806 51.6
EL10Ac1g00739 Beta vulgaris HOM05D003718 ORTHO05D004402 1.3e-208 730.7 816 50.1
unitig_8.g3735 Utricularia gibba HOM05D003718 ORTHO05D004402 2.9e-208 729.6 744 55.1
Peaxi162Scf00906g00225 Petunia axillaris HOM05D003718 ORTHO05D004402 5.0e-208 728.8 762 54.7
Rhsim13G0036100 Rhododendron simsii HOM05D003718 ORTHO05D004402 3.2e-207 726.1 728 56.3
ATR0736G006 Amborella trichopoda HOM05D003718 ORTHO05D004402 9.5e-207 724.5 741 54.0
PSO832G2930 Papaver somniferum HOM05D003718 ORTHO05D004402 1.2e-206 724.2 805 51.1
BraA03t14340Z Brassica rapa HOM05D003718 ORTHO05D004402 2.1e-206 723.4 812 51.5
CDE07G1087 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 3.0e-205 719.5 804 50.2
CDE04G2599 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 4.0e-205 719.2 805 51.1
BcaNung03839 Brassica carinata HOM05D003718 ORTHO05D004402 2.8e-203 713.0 796 50.8
Hund17111 Selenicereus undatus HOM05D003718 ORTHO05D004402 4.9e-203 712.2 756 51.3
Os01g0911200 Oryza sativa ssp. japonica HOM05D003718 ORTHO05D004402 3.3e-199 699.5 786 50.6
C01p15100 Brassica napus HOM05D003718 ORTHO05D004402 2.8e-198 696.4 762 51.7
BraA01t01195Z Brassica rapa HOM05D003718 ORTHO05D004402 8.0e-198 694.9 766 51.3
A01p12510 Brassica napus HOM05D003718 ORTHO05D004402 1.4e-197 694.1 766 51.3
Zm00001eb143710 Zea mays HOM05D003718 ORTHO05D004402 1.8e-197 693.7 796 49.4
Aa31LG6G3160 Aethionema arabicum HOM05D003718 ORTHO05D004402 1.7e-195 687.2 760 51.6
C07p51100 Brassica napus HOM05D003718 ORTHO05D004402 5.4e-194 682.2 765 50.8
BolC7t45610H Brassica oleracea HOM05D003718 ORTHO05D004402 5.4e-194 682.2 765 50.8
TPR.G9204 Trifolium pratense HOM05D003718 ORTHO05D004402 5.4e-194 682.2 779 49.8
A03p52670 Brassica napus HOM05D003718 ORTHO05D004402 7.0e-194 681.8 765 51.0
COL.COLO4_04023 Corchorus olitorius HOM05D003718 ORTHO05D004402 7.0e-194 681.8 733 53.2
Zm00001eb365020 Zea mays HOM05D003718 ORTHO05D004402 4.6e-193 679.1 792 49.2
Psat3g056400 Pisum sativum HOM05D003718 ORTHO05D004402 1.9e-191 673.7 804 49.4
Sc02g0003190 Simmondsia chinensis HOM05D003718 ORTHO05D004402 8.9e-189 664.8 725 51.4
BolC3t20629H Brassica oleracea HOM05D003718 ORTHO05D004402 4.4e-188 662.5 805 49.2
Nitab4.5_0005411g0050 Nicotiana tabacum HOM05D003718 ORTHO05D004402 9.8e-188 661.4 763 50.2
AUR62023389 Chenopodium quinoa HOM05D003718 ORTHO05D004402 4.9e-187 659.1 799 47.3
Ca_08683_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 5.0e-184 649.0 805 48.6
HPP92_000351 Vanilla planifolia HOM05D003718 ORTHO05D004402 3.3e-183 646.4 784 48.5
C03p83480 Brassica napus HOM05D003718 ORTHO05D004402 7.5e-180 635.2 814 47.4
BcaC01g00710 Brassica carinata HOM05D003718 ORTHO05D004402 9.9e-164 581.6 627 53.3
Ah.05g177770 Amaranthus hybridus HOM05D003718 ORTHO05D004402 7.1e-154 548.9 642 47.5
Cpa.g.sc20.44 Carica papaya HOM05D003718 ORTHO05D004402 7.1e-154 548.9 805 43.4
Nitab4.5_0005095g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 1.3e-150 538.1 596 51.2
Mapoly0028s0115 Marchantia polymorpha HOM05D003718 ORTHO05D004402 1.9e-127 461.1 804 38.6
Actinidia37517 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.1e-125 455.3 686 43.0
CsaV3_UNG055470 Cucumis sativus L. HOM05D003718 ORTHO05D004402 1.0e-123 448.7 501 51.5
AUR62043414 Chenopodium quinoa HOM05D003718 ORTHO05D004402 1.6e-113 414.8 356 59.8
SEGI_27157 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 3.8e-107 393.7 361 57.9
HanXRQChr11g0336771 Helianthus annuus HOM05D003718 ORTHO05D004402 1.2e-105 388.7 380 56.6
vmacro02673 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 6.1e-105 386.3 322 64.9
EL10Ac1g02094 Beta vulgaris HOM05D003718 ORTHO05D004402 1.2e-87 328.9 307 55.7
A08p15230 Brassica napus HOM05D003718 ORTHO05D001664 1.4e-80 305.4 616 35.4
Haze_21407 Corylus avellana HOM05D003718 ORTHO05D004402 1.4e-80 305.4 381 48.0
Psat0ss9065g0080 Pisum sativum HOM05D003718 ORTHO05D004402 5.2e-80 303.5 520 37.9
FAN20G1425 Fragaria x ananassa HOM05D003718 ORTHO05D004402 2.6e-79 301.2 381 48.0
AagrBONN_evm.TU.Sc2ySwM_340.234 Anthoceros agrestis HOM05D003718 ORTHO05D004402 2.3e-75 288.1 414 42.5
Hma1.2p1_0576F.1_g181950 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 2.9e-62 244.6 309 49.2
Pp3c7_6480 Physcomitrium patens HOM05D003718 ORTHO05D004402 1.1e-61 242.7 379 40.4
CBR_g32152 Chara braunii HOM05D003718 ORTHO05D004402 8.9e-56 223.0 533 34.3
Actinidia09538 Actinidia chinensis HOM05D003718 ORTHO05D004402 3.4e-55 221.1 156 73.7
Actinidia09536 Actinidia chinensis HOM05D003718 ORTHO05D004402 4.0e-48 197.6 320 41.2
FAN27G1677 Fragaria x ananassa HOM05D003718 ORTHO05D004402 3.5e-44 184.5 178 53.9
SEGI_31370 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 1.7e-43 182.2 258 46.1
Psat7g093680 Pisum sativum HOM05D003718 ORTHO05D004402 8.4e-38 163.3 393 31.8
HPP92_000418 Vanilla planifolia HOM05D003718 ORTHO05D004402 1.9e-34 152.1 206 44.2
SMO367G0218 Selaginella moellendorffii HOM05D003718 ORTHO05D004402 6.2e-33 147.1 135 57.0
SHI09762 Sapria himalayana HOM05D003718 ORTHO05D004402 4.0e-32 144.4 187 45.5
CsaV3_UNG055460 Cucumis sativus L. HOM05D003718 ORTHO05D004402 9.9e-31 139.8 212 42.5
Actinidia09537 Actinidia chinensis HOM05D003718 ORTHO05D004402 3.8e-30 137.9 163 50.3
arahy.Tifrunner.gnm1.ann1.S1G2KX Arachis hypogaea HOM05D003718 ORTHO05D004402 2.3e-27 128.6 118 54.2
arahy.Tifrunner.gnm1.ann1.6B4W14 Arachis hypogaea HOM05D003718 ORTHO05D004402 3.0e-27 128.3 79 77.2
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 3.9e-27 127.9 89 69.7
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 5.1e-27 127.5 89 69.7
Actinidia25800 Actinidia chinensis HOM05D003718 ORTHO05D004402 2.1e-25 122.1 236 36.9
Actinidia30158 Actinidia chinensis HOM05D003718 ORTHO05D004402 2.6e-23 115.2 104 55.8
Psat6g086960 Pisum sativum HOM05D003718 ORTHO05D004402 1.3e-22 112.8 86 69.8
Lsat_1_v5_gn_4_881 Lactuca sativa HOM05D003718 ORTHO05D004402 6.3e-17 94.0 199 28.6
Psat6g087000 Pisum sativum HOM05D003718 ORTHO05D004402 1.2e-15 89.7 67 71.6
Cre08.g368450 Chlamydomonas reinhardtii HOM05D003718 ORTHO05D004402 2.0e-15 89.0 273 32.2
Actinidia30157 Actinidia chinensis HOM05D003718 ORTHO05D057597 5.0e-14 84.3 85 57.6
Lsat_1_v5_gn_3_107020 Lactuca sativa HOM05D003718 ORTHO05D004402 1.6e-12 79.3 143 37.8
Lsat_1_v5_gn_9_27880 Lactuca sativa HOM05D003718 ORTHO05D004402 3.0e-11 75.1 114 42.1
Actinidia25801 Actinidia chinensis HOM05D003718 ORTHO05D004402 6.7e-11 73.9 117 39.3
arahy.Tifrunner.gnm1.ann1.LM6F6Z Arachis hypogaea HOM05D003718 ORTHO05D004402 4.8e-09 67.8 115 36.5
Gohir.A01G185580 Gossypium hirsutum HOM05D003718 ORTHO05D000087 1.1e-08 66.6 76 52.6


User provided reference genes

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