Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold138G35181 Striga asiatica HOM05D007918 ORTHO05D010025 8.7e-69 263.5 128 100.0
SGA_v2.0_scaffold1G00664 Striga asiatica HOM05D007918 ORTHO05D010025 2.1e-30 136.0 103 66.0
SalBow4G0315 Salvia bowleyana HOM05D007918 ORTHO05D010025 6.7e-21 104.4 106 50.9
Oeu015438.1 Olea europaea HOM05D007918 ORTHO05D010025 7.0e-18 94.4 106 51.9
Migut.D00482 Erythranthe guttata HOM05D007918 ORTHO05D010025 3.5e-17 92.0 101 51.5
Cc01_g17750 Coffea canephora HOM05D007918 ORTHO05D010025 2.6e-12 75.9 98 44.9
Hma1.2p1_2127F.1_g314650 Hydrangea macrophylla HOM05D007918 ORTHO05D010025 1.3e-11 73.6 105 39.0
TAR362G0051 Trochodendron aralioides HOM05D007918 ORTHO05D010025 1.3e-11 73.6 86 44.2
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 1.7e-11 73.2 83 49.4
Rhsim01G0260000 Rhododendron simsii HOM05D007918 ORTHO05D010025 2.2e-11 72.8 81 45.7
Manes.13G039200 Manihot esculenta HOM05D007918 ORTHO05D010025 2.8e-11 72.4 78 47.4
Aqoxy5G00124 Aquilegia oxysepala HOM05D007918 ORTHO05D010025 8.3e-11 70.9 95 38.9
CiPaw.03G271500 Carya illinoinensis HOM05D007918 ORTHO05D010025 2.0e-09 66.2 72 50.0
Glyma.03G167700 Glycine max HOM05D007918 ORTHO05D010025 2.7e-09 65.9 93 43.0
PGSC0003DMG400008578 Solanum tuberosum HOM05D007918 ORTHO05D010025 3.5e-09 65.5 73 46.6
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 4.5e-09 65.1 71 49.3
Sopen09g025600 Solanum pennellii HOM05D000691 ORTHO05D000378 4.5e-09 65.1 73 46.6
Atru.chr5.1868 Acer truncatum HOM05D007918 ORTHO05D010025 5.9e-09 64.7 98 38.8
TWI12G1379 Tripterygium wilfordii HOM05D007918 ORTHO05D010025 7.7e-09 64.3 75 42.7
Ciclev10024004m.g Citrus clementina HOM05D007918 ORTHO05D010025 1.3e-08 63.5 71 46.5
Actinidia23702 Actinidia chinensis HOM05D007918 ORTHO05D010025 1.7e-08 63.2 65 50.8
Solyc09g064460.1 Solanum lycopersicum HOM05D007918 ORTHO05D010025 2.2e-08 62.8 73 45.2
Sabra02G0194600 Salix brachista HOM05D007918 ORTHO05D010025 5.0e-08 61.6 73 43.8
Cpa.g.sc87.38 Carica papaya HOM05D007918 ORTHO05D010025 6.5e-08 61.2 76 40.8
CsaV3_6G007330 Cucumis sativus L. HOM05D007918 ORTHO05D010025 6.5e-08 61.2 103 35.9
Glyma.19G168900 Glycine max HOM05D007918 ORTHO05D010025 8.5e-08 60.8 72 44.4
QL09p041632 Quercus lobata HOM05D007918 ORTHO05D010025 8.5e-08 60.8 76 39.5
Thecc.01G249400 Theobroma cacao HOM05D007918 ORTHO05D010025 8.5e-08 60.8 82 40.2
AUR62008804 Chenopodium quinoa HOM05D000474 ORTHO05D001061 1.1e-07 60.5 74 44.6
Eucgr.K01423 Eucalyptus grandis HOM05D007918 ORTHO05D010025 1.1e-07 60.5 66 47.0
Lalb_Chr25g0289821 Lupinus albus HOM05D007918 ORTHO05D010025 1.1e-07 60.5 102 31.4
Nn1g03000 Nelumbo nucifera HOM05D007918 ORTHO05D010025 1.1e-07 60.5 66 45.5
Sed0001064 Sechium edule HOM05D007918 ORTHO05D010025 1.1e-07 60.5 59 55.9
ClCG06G001390 Citrullus lanatus HOM05D007918 ORTHO05D010025 1.5e-07 60.1 65 52.3
Gohir.A07G203900 Gossypium hirsutum HOM05D007918 ORTHO05D010025 1.5e-07 60.1 69 42.0
Lj1g0000049 Lotus japonicus HOM05D007918 ORTHO05D010025 1.5e-07 60.1 73 42.5
Sc05g0002860 Simmondsia chinensis HOM05D007918 ORTHO05D010025 1.5e-07 60.1 104 33.7
Phvul.001G165400 Phaseolus vulgaris HOM05D007918 ORTHO05D010025 1.9e-07 59.7 80 41.2
Manes.12G038300 Manihot esculenta HOM05D007918 ORTHO05D010025 3.2e-07 58.9 79 38.0
Medtr7g098680 Medicago truncatula HOM05D007918 ORTHO05D010025 3.2e-07 58.9 74 41.9
unitig_22.g6306 Utricularia gibba HOM05D007918 ORTHO05D010025 3.2e-07 58.9 76 43.4
Gohir.D07G209900 Gossypium hirsutum HOM05D007918 ORTHO05D010025 5.5e-07 58.2 69 40.6
Gorai.001G237300 Gossypium raimondii HOM05D007918 ORTHO05D010025 5.5e-07 58.2 69 40.6
VMungo1383G2778 Vigna mungo HOM05D007918 ORTHO05D010025 5.5e-07 58.2 72 43.1
COL.COLO4_02903 Corchorus olitorius HOM05D007918 ORTHO05D010025 1.2e-06 57.0 110 32.7
FAN15G1752 Fragaria x ananassa HOM05D007918 ORTHO05D010025 1.6e-06 56.6 77 40.3
Lsat_1_v5_gn_0_19161 Lactuca sativa HOM05D007918 ORTHO05D010025 1.6e-06 56.6 74 40.5
TPR.G29178 Trifolium pratense HOM05D007918 ORTHO05D010025 1.6e-06 56.6 73 39.7
Lsat_1_v5_gn_8_91021 Lactuca sativa HOM05D007918 ORTHO05D010025 2.1e-06 56.2 96 36.5
DCAR_000468 Daucus carota HOM05D000121 ORTHO05D000102 2.7e-06 55.8 69 44.9
Potri.002G256100 Populus trichocarpa HOM05D007918 ORTHO05D010025 2.7e-06 55.8 73 39.7
FvH4_2g20371 Fragaria vesca HOM05D007918 ORTHO05D010025 3.6e-06 55.5 73 41.1
FAN24G2847 Fragaria x ananassa HOM05D007918 ORTHO05D010025 3.6e-06 55.5 73 41.1
Ah.08g213630 Amaranthus hybridus HOM05D000474 ORTHO05D001061 4.7e-06 55.1 69 42.0
DCAR_012594 Daucus carota HOM05D000121 ORTHO05D000102 6.1e-06 54.7 79 39.2
Duzib211G0621 Durio zibethinus HOM05D007918 ORTHO05D010025 6.1e-06 54.7 82 32.9
HanXRQChr04g0107631 Helianthus annuus HOM05D007918 ORTHO05D010025 8.0e-06 54.3 70 40.0


User provided reference genes

Program Settings