Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold120G32899 Striga asiatica HOM05D033587 ORTHO05D399586 1.3e-63 246.5 150 100.0
SGA_v2.0_scaffold138G35175 Striga asiatica HOM05D033587 ORTHO05D405458 1.3e-63 246.5 150 100.0
SGA_v2.0_scaffold1211G53863 Striga asiatica HOM05D033587 ORTHO05D401202 9.9e-48 193.7 90 100.0
SGA_v2.0_scaffold31G12849 Striga asiatica HOM05D000517 ORTHO05D003374 2.1e-13 79.7 48 77.1
MSTRG.19310 Avicennia marina HOM05D000517 ORTHO05D003374 6.9e-09 64.7 49 59.2
MSTRG.10397 Avicennia marina HOM05D000517 ORTHO05D003374 4.5e-08 62.0 49 53.1
Gohir.D01G191400 Gossypium hirsutum HOM05D000517 ORTHO05D003374 7.7e-08 61.2 57 54.4
Gorai.002G235300 Gossypium raimondii HOM05D000517 ORTHO05D003374 7.7e-08 61.2 57 54.4
Potri.016G070500 Populus trichocarpa HOM05D000517 ORTHO05D003374 7.7e-08 61.2 59 52.5
Cc06_g06550 Coffea canephora HOM05D000517 ORTHO05D003374 1.0e-07 60.8 46 60.9
Phvul.001G195500 Phaseolus vulgaris HOM05D000517 ORTHO05D003374 1.0e-07 60.8 52 55.8
Actinidia03890 Actinidia chinensis HOM05D000517 ORTHO05D003374 1.3e-07 60.5 43 60.5
CAN.G574.18 Capsicum annuum HOM05D000517 ORTHO05D003374 1.3e-07 60.5 48 54.2
Hund20944 Selenicereus undatus HOM05D000517 ORTHO05D003374 1.3e-07 60.5 59 49.2
AUR62001547 Chenopodium quinoa HOM05D000517 ORTHO05D003374 1.7e-07 60.1 59 47.5
MD00G1049600 Malus domestica HOM05D000517 ORTHO05D003374 1.7e-07 60.1 52 53.8
Solyc01g007130.3 Solanum lycopersicum HOM05D000517 ORTHO05D003374 1.7e-07 60.1 48 60.4
Sopen01g003110 Solanum pennellii HOM05D000517 ORTHO05D003374 1.7e-07 60.1 48 60.4
TWI74G0613 Tripterygium wilfordii HOM05D000517 ORTHO05D003374 1.7e-07 60.1 59 52.5
Duzib093G1175 Durio zibethinus HOM05D000517 ORTHO05D003374 2.2e-07 59.7 43 60.5
Migut.J00704 Erythranthe guttata HOM05D000517 ORTHO05D003374 2.2e-07 59.7 48 54.2
Gohir.A01G201500 Gossypium hirsutum HOM05D000517 ORTHO05D003374 2.2e-07 59.7 46 58.7
Peaxi162Scf00211g00079 Petunia axillaris HOM05D000517 ORTHO05D003374 2.2e-07 59.7 48 56.2
Peaxi162Scf00586g00037 Petunia axillaris HOM05D000517 ORTHO05D003374 2.2e-07 59.7 48 56.2
Potri.006G203500 Populus trichocarpa HOM05D000517 ORTHO05D003374 2.2e-07 59.7 46 60.9
Thecc.05G104200 Theobroma cacao HOM05D000517 ORTHO05D003374 2.2e-07 59.7 43 60.5
MSTRG.5895 Avicennia marina HOM05D000517 ORTHO05D003374 2.9e-07 59.3 48 54.2
COL.COLO4_29576 Corchorus olitorius HOM05D000517 ORTHO05D003374 2.9e-07 59.3 43 58.1
Duzib106G1324 Durio zibethinus HOM05D000517 ORTHO05D003374 2.9e-07 59.3 43 58.1
CANSAT64G1397 Cannabis sativa HOM05D000517 ORTHO05D003374 3.8e-07 58.9 59 47.5
Cfa020028 Carpinus fangiana HOM05D000517 ORTHO05D003374 3.8e-07 58.9 46 56.5
Lalb_Chr25g0288001 Lupinus albus HOM05D000517 ORTHO05D003374 3.8e-07 58.9 61 47.5
TWI31G1131 Tripterygium wilfordii HOM05D000517 ORTHO05D003374 3.8e-07 58.9 46 56.5
Atru.chr8.1368 Acer truncatum HOM05D000517 ORTHO05D003374 5.0e-07 58.5 48 56.2
Eucgr.A02593 Eucalyptus grandis HOM05D000517 ORTHO05D003374 5.0e-07 58.5 59 49.2
PGSC0003DMG400021353 Solanum tuberosum HOM05D000517 ORTHO05D003374 5.0e-07 58.5 48 58.3
Ah.12g059180 Amaranthus hybridus HOM05D000517 ORTHO05D003374 6.5e-07 58.2 56 50.0
Glyma.03G202000 Glycine max HOM05D000517 ORTHO05D003374 6.5e-07 58.2 43 60.5
Gohir.D09G130800 Gossypium hirsutum HOM05D000517 ORTHO05D003374 6.5e-07 58.2 43 60.5
Gorai.006G149500 Gossypium raimondii HOM05D000517 ORTHO05D003374 6.5e-07 58.2 43 60.5
Manes.09G045200 Manihot esculenta HOM05D000517 ORTHO05D003374 6.5e-07 58.2 46 58.7
Gohir.A09G134300 Gossypium hirsutum HOM05D000517 ORTHO05D003374 8.5e-07 57.8 43 58.1
Oeu045043.2 Olea europaea HOM05D000517 ORTHO05D003374 8.5e-07 57.8 53 54.7
VMungo1383G2328 Vigna mungo HOM05D000517 ORTHO05D003374 8.5e-07 57.8 52 51.9
Actinidia04000 Actinidia chinensis HOM05D000517 ORTHO05D003374 1.1e-06 57.4 43 55.8
Aqoxy1G00660 Aquilegia oxysepala HOM05D000517 ORTHO05D003374 1.1e-06 57.4 56 46.4
TAR633G0422 Trochodendron aralioides HOM05D000517 ORTHO05D003374 1.1e-06 57.4 46 56.5
CiPaw.09G020800 Carya illinoinensis HOM05D000517 ORTHO05D003374 1.4e-06 57.0 43 55.8
Hma1.2p1_0064F.1_g034680 Hydrangea macrophylla HOM05D000517 ORTHO05D003374 1.4e-06 57.0 46 54.3
Medtr4g051605 Medicago truncatula HOM05D000517 ORTHO05D003374 1.4e-06 57.0 43 53.5
Psat3g029240 Pisum sativum HOM05D000517 ORTHO05D003374 1.4e-06 57.0 46 56.5
Aa31sc52G200 Aethionema arabicum HOM05D000517 ORTHO05D003374 1.9e-06 56.6 47 57.4
Haze_20186 Corylus avellana HOM05D000517 ORTHO05D003374 1.9e-06 56.6 46 54.3
Oeu052617.1 Olea europaea HOM05D000517 ORTHO05D003374 1.9e-06 56.6 46 56.5
Psat7g206520 Pisum sativum HOM05D000517 ORTHO05D003374 1.9e-06 56.6 43 55.8
Ca_09056_v3 Cicer arietinum L. HOM05D000517 ORTHO05D003374 2.5e-06 56.2 46 56.5
Medtr7g106210 Medicago truncatula HOM05D000517 ORTHO05D003374 2.5e-06 56.2 46 56.5
THA.LOC104826803 Tarenaya hassleriana HOM05D000517 ORTHO05D003374 2.5e-06 56.2 46 56.5
arahy.Tifrunner.gnm1.ann1.83HZ7F Arachis hypogaea HOM05D000517 ORTHO05D003374 3.2e-06 55.8 56 44.6
arahy.Tifrunner.gnm1.ann1.U7NMZN Arachis hypogaea HOM05D000517 ORTHO05D003374 3.2e-06 55.8 56 44.6
MD03G1154600 Malus domestica HOM05D000517 ORTHO05D003374 3.2e-06 55.8 52 48.1
Oeu031456.1 Olea europaea HOM05D000517 ORTHO05D003374 3.2e-06 55.8 59 45.8
Prupe.6G143800 Prunus persica HOM05D000517 ORTHO05D003374 3.2e-06 55.8 43 53.5
PGR004G2679 Punica granatum HOM05D000517 ORTHO05D003374 3.2e-06 55.8 48 50.0
QL01p020110 Quercus lobata HOM05D000517 ORTHO05D003374 3.2e-06 55.8 59 44.1
QL07p036767 Quercus lobata HOM05D000517 ORTHO05D003374 3.2e-06 55.8 48 47.9
THA.LOC104816620 Tarenaya hassleriana HOM05D000517 ORTHO05D003374 3.2e-06 55.8 46 56.5
arahy.Tifrunner.gnm1.ann1.6R2SWB Arachis hypogaea HOM05D000517 ORTHO05D003374 4.2e-06 55.5 46 54.3
arahy.Tifrunner.gnm1.ann1.XW0L3B Arachis hypogaea HOM05D000517 ORTHO05D003374 4.2e-06 55.5 46 54.3
Cfa009939 Carpinus fangiana HOM05D000517 ORTHO05D003374 4.2e-06 55.5 46 54.3
Haze_23306 Corylus avellana HOM05D000517 ORTHO05D003374 4.2e-06 55.5 46 52.2
DCAR_020705 Daucus carota HOM05D000517 ORTHO05D003374 4.2e-06 55.5 46 54.3
Potri.001G217700 Populus trichocarpa HOM05D000517 ORTHO05D003374 4.2e-06 55.5 46 54.3
RcHm_v2.0_Chr5g0048201 Rosa chinensis HOM05D000517 ORTHO05D003374 4.2e-06 55.5 43 48.8
Sabra06G0156700 Salix brachista HOM05D000517 ORTHO05D003374 4.2e-06 55.5 46 56.5
Sc22g0002870 Simmondsia chinensis HOM05D000517 ORTHO05D003374 4.2e-06 55.5 56 46.4
TPR.G4676 Trifolium pratense HOM05D000517 ORTHO05D003374 4.2e-06 55.5 43 55.8
VMungo0720G1394 Vigna mungo HOM05D000517 ORTHO05D003374 4.2e-06 55.5 46 54.3
AUR62030746 Chenopodium quinoa HOM05D000517 ORTHO05D003374 5.5e-06 55.1 59 47.5
AUR62036384 Chenopodium quinoa HOM05D000517 ORTHO05D003374 5.5e-06 55.1 59 47.5
Dinv08142 Davidia involucrata HOM05D000517 ORTHO05D003374 5.5e-06 55.1 46 52.2
Glyma.12G094200 Glycine max HOM05D000517 ORTHO05D003374 5.5e-06 55.1 56 44.6
Gohir.A07G113100 Gossypium hirsutum HOM05D000517 ORTHO05D003374 5.5e-06 55.1 43 51.2
Gohir.D07G116600 Gossypium hirsutum HOM05D000517 ORTHO05D003374 5.5e-06 55.1 43 51.2
Gorai.001G125200 Gossypium raimondii HOM05D000517 ORTHO05D003374 5.5e-06 55.1 43 51.2
Lj1g0024773 Lotus japonicus HOM05D000517 ORTHO05D003374 5.5e-06 55.1 56 46.4
Nitab4.5_0004452g0040 Nicotiana tabacum HOM05D000517 ORTHO05D003374 5.5e-06 55.1 49 55.1
Phvul.007G268200 Phaseolus vulgaris HOM05D000517 ORTHO05D003374 5.5e-06 55.1 43 53.5
Sabra16G0070700 Salix brachista HOM05D000517 ORTHO05D003374 5.5e-06 55.1 43 55.8
Sabra16G0072900 Salix brachista HOM05D000517 ORTHO05D003374 5.5e-06 55.1 43 55.8
Sc21g0006830 Simmondsia chinensis HOM05D000517 ORTHO05D003374 5.5e-06 55.1 57 47.4
Thecc.09G273700 Theobroma cacao HOM05D000517 ORTHO05D003374 5.5e-06 55.1 56 42.9
TPR.G35569 Trifolium pratense HOM05D000517 ORTHO05D003374 5.5e-06 55.1 46 54.3
GSVIVG01033956001 Vitis vinifera HOM05D000517 ORTHO05D003374 5.5e-06 55.1 52 48.1
Duzib168G0473 Durio zibethinus HOM05D000517 ORTHO05D003374 7.2e-06 54.7 56 42.9
Nn6g34693 Nelumbo nucifera HOM05D000517 ORTHO05D003374 7.2e-06 54.7 43 53.5
TAR636G0888 Trochodendron aralioides HOM05D000517 ORTHO05D003374 7.2e-06 54.7 46 54.3
CiPaw.13G130700 Carya illinoinensis HOM05D000517 ORTHO05D003374 9.4e-06 54.3 57 47.4
COL.COLO4_10189 Corchorus olitorius HOM05D000517 ORTHO05D003374 9.4e-06 54.3 56 42.9
FAN02G4105 Fragaria x ananassa HOM05D000517 ORTHO05D003374 9.4e-06 54.3 59 45.8
FAN05G3015 Fragaria x ananassa HOM05D000517 ORTHO05D003374 9.4e-06 54.3 59 44.1
FAN05G5189 Fragaria x ananassa HOM05D000517 ORTHO05D003374 9.4e-06 54.3 59 44.1
Gohir.D09G098200 Gossypium hirsutum HOM05D000517 ORTHO05D003374 9.4e-06 54.3 56 44.6
Gorai.006G115200 Gossypium raimondii HOM05D000517 ORTHO05D003374 9.4e-06 54.3 56 44.6
Lj1A1052T38 Lonicera japonica HOM05D000517 ORTHO05D003374 9.4e-06 54.3 43 48.8
MD14G1038700 Malus domestica HOM05D000517 ORTHO05D003374 9.4e-06 54.3 43 51.2
Medtr2g087230 Medicago truncatula HOM05D000517 ORTHO05D003374 9.4e-06 54.3 43 48.8
Rhsim03G0065700 Rhododendron simsii HOM05D000517 ORTHO05D003374 9.4e-06 54.3 44 54.5
Sabra16G0126200 Salix brachista HOM05D000517 ORTHO05D003374 9.4e-06 54.3 59 44.1
Solyc06g074070.3 Solanum lycopersicum HOM05D000517 ORTHO05D003374 9.4e-06 54.3 46 50.0
Sopen06g030490 Solanum pennellii HOM05D000517 ORTHO05D003374 9.4e-06 54.3 46 50.0
PGSC0003DMG400005896 Solanum tuberosum HOM05D000517 ORTHO05D003374 9.4e-06 54.3 46 50.0


User provided reference genes

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