Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold137G35098 Striga asiatica HOM05D005734 ORTHO05D006990 3.8e-61 238.0 125 100.0
MSTRG.2698 Avicennia marina HOM05D005734 ORTHO05D006990 3.3e-49 198.4 116 85.3
SalBow3G4629 Salvia bowleyana HOM05D005734 ORTHO05D006990 2.8e-48 195.3 114 85.1
Cc07_g10570 Coffea canephora HOM05D005734 ORTHO05D006990 7.0e-47 190.7 111 86.5
Migut.H01144 Erythranthe guttata HOM05D005734 ORTHO05D006990 7.0e-47 190.7 117 82.9
Dinv33615 Davidia involucrata HOM05D005734 ORTHO05D006990 9.1e-47 190.3 116 82.8
TAR376G0390 Trochodendron aralioides HOM05D005734 ORTHO05D006990 1.2e-46 189.9 116 81.0
Actinidia31004 Actinidia chinensis HOM05D005734 ORTHO05D006990 3.5e-46 188.3 116 81.9
COL.COLO4_21933 Corchorus olitorius HOM05D005734 ORTHO05D006990 5.9e-46 187.6 117 80.3
Thecc.01G021200 Theobroma cacao HOM05D005734 ORTHO05D006990 7.7e-46 187.2 117 80.3
Gorai.003G010600 Gossypium raimondii HOM05D005734 ORTHO05D006990 1.0e-45 186.8 119 77.3
PGSC0003DMG400003554 Solanum tuberosum HOM05D005734 ORTHO05D006990 1.0e-45 186.8 119 79.8
Solyc02g084220.3 Solanum lycopersicum HOM05D005734 ORTHO05D006990 1.3e-45 186.4 120 80.8
Peaxi162Scf00083g00086 Petunia axillaris HOM05D005734 ORTHO05D006990 2.2e-45 185.7 116 81.0
GSVIVG01018804001 Vitis vinifera HOM05D005734 ORTHO05D006990 2.2e-45 185.7 116 78.4
Gohir.D03G010200 Gossypium hirsutum HOM05D005734 ORTHO05D006990 2.9e-45 185.3 119 76.5
Eucgr.K02152 Eucalyptus grandis HOM05D005734 ORTHO05D006990 3.8e-45 184.9 120 79.2
Lj2C466G2 Lonicera japonica HOM05D005734 ORTHO05D006990 3.8e-45 184.9 116 80.2
Aqoxy4G02678 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 5.0e-45 184.5 112 82.1
Nitab4.5_0005721g0110 Nicotiana tabacum HOM05D005734 ORTHO05D006990 8.5e-45 183.7 126 77.0
Rhsim08G0034500 Rhododendron simsii HOM05D005734 ORTHO05D006990 8.5e-45 183.7 116 77.6
Sopen02g028960 Solanum pennellii HOM05D005734 ORTHO05D006990 8.5e-45 183.7 120 80.0
Nitab4.5_0004254g0030 Nicotiana tabacum HOM05D005734 ORTHO05D006990 1.1e-44 183.3 126 76.2
Aqoxy4G02673 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 1.5e-44 183.0 112 81.2
Prupe.7G166600 Prunus persica HOM05D005734 ORTHO05D006990 1.9e-44 182.6 115 80.0
Ciclev10026469m.g Citrus clementina HOM05D005734 ORTHO05D006990 3.2e-44 181.8 111 81.1
Manes.02G102700 Manihot esculenta HOM05D005734 ORTHO05D006990 3.2e-44 181.8 116 78.4
QL06p033647 Quercus lobata HOM05D005734 ORTHO05D006990 3.2e-44 181.8 116 78.4
QL06p033653 Quercus lobata HOM05D005734 ORTHO05D006990 3.2e-44 181.8 116 78.4
CSS0031169 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 4.2e-44 181.4 114 79.8
Gohir.A02G169800 Gossypium hirsutum HOM05D005734 ORTHO05D006990 4.2e-44 181.4 119 75.6
Nn6g32291 Nelumbo nucifera HOM05D005734 ORTHO05D006990 4.2e-44 181.4 116 75.9
arahy.Tifrunner.gnm1.ann1.DFQ3ES Arachis hypogaea HOM05D005734 ORTHO05D006990 7.2e-44 180.6 114 77.2
arahy.Tifrunner.gnm1.ann1.GC558H Arachis hypogaea HOM05D005734 ORTHO05D006990 7.2e-44 180.6 109 80.7
TWI73G0895 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 9.4e-44 180.3 113 79.6
Lalb_Chr16g0391171 Lupinus albus HOM05D005734 ORTHO05D006990 1.2e-43 179.9 114 77.2
Phvul.002G110400 Phaseolus vulgaris HOM05D005734 ORTHO05D006990 1.2e-43 179.9 114 78.9
Cfa006957 Carpinus fangiana HOM05D005734 ORTHO05D006990 1.6e-43 179.5 116 78.4
Duzib147G0754 Durio zibethinus HOM05D005734 ORTHO05D006990 1.6e-43 179.5 115 79.1
TAR628G0339 Trochodendron aralioides HOM05D005734 ORTHO05D006990 2.1e-43 179.1 116 75.0
CSS0012385 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 2.7e-43 178.7 114 78.9
Sabra07G0011400 Salix brachista HOM05D005734 ORTHO05D006990 3.6e-43 178.3 116 76.7
CiPaw.08G133400 Carya illinoinensis HOM05D005734 ORTHO05D006990 4.7e-43 177.9 118 78.8
AUR62018084 Chenopodium quinoa HOM05D005734 ORTHO05D006990 6.1e-43 177.6 117 76.9
CSS0021905 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 8.0e-43 177.2 114 78.1
VMungo1215G0268 Vigna mungo HOM05D005734 ORTHO05D006990 8.0e-43 177.2 116 75.9
DCAR_017347 Daucus carota HOM05D005734 ORTHO05D006990 1.4e-42 176.4 114 76.3
PSO210G7806 Papaver somniferum HOM05D005734 ORTHO05D006990 1.8e-42 176.0 118 73.7
MD15G1247200 Malus domestica HOM05D005734 ORTHO05D006990 2.3e-42 175.6 109 79.8
vmacro18422 Vaccinium macrocarpon HOM05D005734 ORTHO05D006990 3.0e-42 175.3 114 76.3
Carub.0008s2820 Capsella rubella HOM05D005734 ORTHO05D006990 5.2e-42 174.5 110 77.3
Glyma.11G075600 Glycine max HOM05D005734 ORTHO05D006990 5.2e-42 174.5 118 75.4
Ah.03g141620 Amaranthus hybridus HOM05D005734 ORTHO05D006990 6.8e-42 174.1 118 76.3
Os03g0727100 Oryza sativa ssp. japonica HOM05D005734 ORTHO05D006990 8.8e-42 173.7 112 75.0
TWI09G0878 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 8.8e-42 173.7 118 77.1
Potri.005G116300 Populus trichocarpa HOM05D005734 ORTHO05D006990 1.5e-41 172.9 116 75.0
Sp2g30330 Schrenkiella parvula HOM05D005734 ORTHO05D006990 2.0e-41 172.6 108 79.6
Hund14038 Selenicereus undatus HOM05D005734 ORTHO05D006990 2.0e-41 172.6 113 76.1
Psat2g155360 Pisum sativum HOM05D005734 ORTHO05D006990 2.6e-41 172.2 114 74.6
RcHm_v2.0_Chr2g0099641 Rosa chinensis HOM05D005734 ORTHO05D006990 2.6e-41 172.2 115 73.9
Atru.chr3.782 Acer truncatum HOM05D005734 ORTHO05D006990 4.4e-41 171.4 108 77.8
EL10Ac3g07303 Beta vulgaris HOM05D005734 ORTHO05D006990 4.4e-41 171.4 120 72.5
ClCG07G008420 Citrullus lanatus HOM05D005734 ORTHO05D006990 4.4e-41 171.4 116 71.6
AL8G45230 Arabidopsis lyrata HOM05D005734 ORTHO05D006990 5.7e-41 171.0 110 76.4
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 5.7e-41 171.0 115 73.9
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 5.7e-41 171.0 115 73.9
RcHm_v2.0_Chr5g0080231 Rosa chinensis HOM05D005734 ORTHO05D006990 5.7e-41 171.0 115 73.0
Sabra05G0095300 Salix brachista HOM05D005734 ORTHO05D006990 5.7e-41 171.0 116 73.3
Sed0005630 Sechium edule HOM05D005734 ORTHO05D006990 5.7e-41 171.0 116 72.4
Sc16g0002040 Simmondsia chinensis HOM05D005734 ORTHO05D006990 7.5e-41 170.6 110 79.1
TPR.G2344 Trifolium pratense HOM05D005734 ORTHO05D006990 7.5e-41 170.6 114 73.7
AT5G66290 Arabidopsis thaliana HOM05D005734 ORTHO05D006990 9.8e-41 170.2 110 75.5
Thhalv10004735m.g Eutrema salsugineum HOM05D005734 ORTHO05D006990 1.3e-40 169.9 108 76.9
FvH4_1g12000 Fragaria vesca HOM05D005734 ORTHO05D006990 1.3e-40 169.9 119 70.6
FAN19G0086 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.3e-40 169.9 119 70.6
FAN26G0019 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.3e-40 169.9 119 71.4
Glyma.01G167600 Glycine max HOM05D005734 ORTHO05D006990 1.3e-40 169.9 115 73.0
A07p17570 Brassica napus HOM05D005734 ORTHO05D006990 1.7e-40 169.5 108 76.9
HPP92_018404 Vanilla planifolia HOM05D005734 ORTHO05D006990 1.7e-40 169.5 116 73.3
CsaV3_4G005730 Cucumis sativus L. HOM05D005734 ORTHO05D006990 2.2e-40 169.1 114 72.8
CARHR281420 Cardamine hirsuta HOM05D005734 ORTHO05D006990 2.8e-40 168.7 108 76.9
Lj2g0025294 Lotus japonicus HOM05D005734 ORTHO05D006990 2.8e-40 168.7 115 73.9
MD02G1134200 Malus domestica HOM05D005734 ORTHO05D006990 2.8e-40 168.7 109 77.1
Medtr5g021750 Medicago truncatula HOM05D005734 ORTHO05D006990 2.8e-40 168.7 114 72.8
Zm00001eb055930 Zea mays HOM05D005734 ORTHO05D006990 3.7e-40 168.3 118 71.2
Aa31LG1G14770 Aethionema arabicum HOM05D005734 ORTHO05D006990 4.8e-40 167.9 114 72.8
Ca_24908_v3 Cicer arietinum L. HOM05D005734 ORTHO05D006990 4.8e-40 167.9 108 75.9
unitig_699.g19712 Utricularia gibba HOM05D005734 ORTHO05D006990 4.8e-40 167.9 120 72.5
BcaB02g10036 Brassica carinata HOM05D005734 ORTHO05D006990 1.1e-39 166.8 108 75.0
THA.LOC104819182 Tarenaya hassleriana HOM05D005734 ORTHO05D006990 1.4e-39 166.4 110 74.5
BcaC06g34694 Brassica carinata HOM05D005734 ORTHO05D006990 1.8e-39 166.0 108 75.0
C07p25530 Brassica napus HOM05D005734 ORTHO05D006990 1.8e-39 166.0 108 75.0
BolC7t43073H Brassica oleracea HOM05D005734 ORTHO05D006990 1.8e-39 166.0 108 75.0
ATR0147G004 Amborella trichopoda HOM05D005734 ORTHO05D006990 2.4e-39 165.6 113 69.0
ECA246G4348 Erigeron canadensis HOM05D000013 ORTHO05D000011 3.1e-39 165.2 116 71.6
ATR0876G001 Amborella trichopoda HOM05D005734 ORTHO05D006990 2.0e-38 162.5 111 68.5
HanXRQChr16g0531031 Helianthus annuus HOM05D005734 ORTHO05D006990 2.0e-38 162.5 117 70.9
HanXRQChr15g0482851 Helianthus annuus HOM05D005734 ORTHO05D006990 3.5e-38 161.8 118 72.0
BcaC04g23120 Brassica carinata HOM05D005734 ORTHO05D006990 4.5e-38 161.4 110 70.9
BcaC04g23124 Brassica carinata HOM05D005734 ORTHO05D006990 4.5e-38 161.4 110 70.9
BcaNung05273 Brassica carinata HOM05D005734 ORTHO05D006990 4.5e-38 161.4 110 70.9
C09p11890 Brassica napus HOM05D005734 ORTHO05D006990 4.5e-38 161.4 110 70.9
BolC9t54077H Brassica oleracea HOM05D005734 ORTHO05D006990 4.5e-38 161.4 110 70.9
Lsat_1_v5_gn_3_73980 Lactuca sativa HOM05D005734 ORTHO05D006990 7.7e-38 160.6 111 73.0
BcaNung04509 Brassica carinata HOM05D005734 ORTHO05D006990 1.0e-37 160.2 109 71.6
MBI05_g26512_MAGBIO Magnolia biondii HOM05D005734 ORTHO05D006990 3.8e-37 158.3 130 63.8
A09p10030 Brassica napus HOM05D005734 ORTHO05D006990 5.0e-37 157.9 108 70.4
Cpa.g.sc6.229 Carica papaya HOM05D005734 ORTHO05D006990 3.3e-36 155.2 116 69.0
Lsat_1_v5_gn_4_152781 Lactuca sativa HOM05D005734 ORTHO05D006990 5.5e-36 154.5 118 63.6
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 1.3e-32 143.3 110 68.2
Gohir.A12G060300 Gossypium hirsutum HOM05D005734 ORTHO05D006990 2.2e-32 142.5 117 65.0
CDE11G0627 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 8.6e-29 130.6 97 64.9
Sc16g0006390 Simmondsia chinensis HOM05D005734 ORTHO05D006990 5.6e-28 127.9 85 78.8
Sc18g0002570 Simmondsia chinensis HOM05D005734 ORTHO05D006990 5.6e-28 127.9 80 82.5
Sc09g0006730 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.4e-26 123.2 85 76.5
FAN23G1819 Fragaria x ananassa HOM05D005734 ORTHO05D006990 4.0e-26 121.7 120 57.5
BraA09t36646Z Brassica rapa HOM05D005734 ORTHO05D006990 4.6e-22 108.2 91 62.6
Haze_03794 Corylus avellana HOM05D005734 ORTHO05D006990 3.3e-20 102.1 67 77.6
Pp3c1_42750 Physcomitrium patens HOM05D005734 ORTHO05D006990 2.1e-19 99.4 108 46.3
Potri.007G014000 Populus trichocarpa HOM05D005734 ORTHO05D006990 2.1e-19 99.4 83 62.7
MELO3C016376.2 Cucumis melo HOM05D005734 ORTHO05D006990 2.3e-18 95.9 65 72.3
RcHm_v2.0_Chr2g0126361 Rosa chinensis HOM05D005734 ORTHO05D006990 5.2e-18 94.7 61 75.4
Pp3c14_25740 Physcomitrium patens HOM05D005734 ORTHO05D006990 2.0e-17 92.8 111 42.3
SMO228G0004 Selaginella moellendorffii HOM05D005734 ORTHO05D006990 3.4e-17 92.0 104 44.2
Mapoly0166s0009 Marchantia polymorpha HOM05D005734 ORTHO05D006990 1.4e-15 86.7 115 39.1
Lj2C474G2 Lonicera japonica HOM05D005734 ORTHO05D006990 1.3e-13 80.1 49 77.6
PSO170G3799 Papaver somniferum HOM05D005734 ORTHO05D006990 3.0e-13 79.0 53 71.7
CDE05G1720 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 5.8e-09 64.7 54 61.1
Lsat_1_v5_gn_4_38760 Lactuca sativa HOM05D005734 ORTHO05D006990 1.7e-08 63.2 52 51.9
AagrBONN_evm.TU.Sc2ySwM_117.481 Anthoceros agrestis HOM05D005734 ORTHO05D006990 2.9e-08 62.4 69 40.6
Gorai.008G063500 Gossypium raimondii HOM05D005734 ORTHO05D006990 4.9e-08 61.6 42 73.8
Gohir.D12G060400 Gossypium hirsutum HOM05D005734 ORTHO05D006990 3.2e-07 58.9 42 71.4
Lj2A474G36 Lonicera japonica HOM05D005734 ORTHO05D006990 5.4e-07 58.2 37 73.0
HanXRQChr04g0110971 Helianthus annuus HOM05D000316 ORTHO05D012803 3.5e-06 55.5 63 52.4


User provided reference genes

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