Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold137G35082 Striga asiatica HOM05D006394 ORTHO05D008057 1.3e-213 746.1 391 100.0
MSTRG.2708 Avicennia marina HOM05D006394 ORTHO05D008057 9.4e-90 334.7 380 56.6
SalBow3G1310 Salvia bowleyana HOM05D006394 ORTHO05D008057 4.5e-84 315.8 369 48.8
Peaxi162Scf00034g02720 Petunia axillaris HOM05D006394 ORTHO05D008057 5.5e-74 282.3 292 58.2
CAN.G1735.1 Capsicum annuum HOM05D006394 ORTHO05D008057 2.7e-73 280.0 292 58.6
Sopen03g006350 Solanum pennellii HOM05D006394 ORTHO05D008057 2.0e-71 273.9 382 48.7
Migut.H01156 Erythranthe guttata HOM05D006394 ORTHO05D008057 3.3e-71 273.1 295 62.0
Solyc03g033560.3 Solanum lycopersicum HOM05D006394 ORTHO05D008057 3.3e-71 273.1 382 48.4
Nitab4.5_0006119g0030 Nicotiana tabacum HOM05D006394 ORTHO05D008057 5.7e-71 272.3 306 56.9
Cc07_g10630 Coffea canephora HOM05D006394 ORTHO05D008057 2.7e-68 263.5 306 56.9
Nitab4.5_0000438g0030 Nicotiana tabacum HOM05D006394 ORTHO05D008057 2.5e-66 256.9 346 50.6
GSVIVG01018789001 Vitis vinifera HOM05D006394 ORTHO05D008057 2.5e-66 256.9 385 48.6
Rhsim10G0213000 Rhododendron simsii HOM05D006394 ORTHO05D008057 4.2e-66 256.1 415 47.5
Duzib264G0144 Durio zibethinus HOM05D006394 ORTHO05D008057 1.6e-65 254.2 315 53.7
unitig_22.g6143 Utricularia gibba HOM05D006394 ORTHO05D008057 2.1e-65 253.8 308 54.5
Actinidia22984 Actinidia chinensis HOM05D006394 ORTHO05D008057 3.6e-65 253.1 388 47.9
CiPaw.07G057900 Carya illinoinensis HOM05D006394 ORTHO05D008057 3.6e-65 253.1 383 48.0
Potri.005G115100 Populus trichocarpa HOM05D006394 ORTHO05D008057 8.0e-65 251.9 292 54.1
Prupe.7G167400 Prunus persica HOM05D006394 ORTHO05D008057 8.0e-65 251.9 379 48.3
Ciclev10025906m.g Citrus clementina HOM05D006394 ORTHO05D008057 1.4e-64 251.1 292 54.5
Dinv33624 Davidia involucrata HOM05D006394 ORTHO05D008057 2.0e-63 247.3 275 58.5
Eucgr.J02427 Eucalyptus grandis HOM05D006394 ORTHO05D008057 5.7e-63 245.7 271 59.4
HanXRQChr14g0441351 Helianthus annuus HOM05D006394 ORTHO05D008057 9.8e-63 245.0 304 56.6
Aqoxy2G01815 Aquilegia oxysepala HOM05D006394 ORTHO05D008057 4.8e-62 242.7 307 55.7
Thecc.01G019800 Theobroma cacao HOM05D006394 ORTHO05D008057 1.8e-61 240.7 287 54.4
Haze_03772 Corylus avellana HOM05D006394 ORTHO05D008057 4.1e-61 239.6 293 54.6
Gohir.D11G183600 Gossypium hirsutum HOM05D006394 ORTHO05D008057 9.1e-61 238.4 294 55.4
Gorai.007G195500 Gossypium raimondii HOM05D006394 ORTHO05D008057 9.1e-61 238.4 294 55.4
Gohir.D10G090000 Gossypium hirsutum HOM05D006394 ORTHO05D008057 2.7e-60 236.9 319 52.7
Gohir.A11G175800 Gossypium hirsutum HOM05D006394 ORTHO05D008057 3.5e-60 236.5 385 47.8
MD15G1246300 Malus domestica HOM05D006394 ORTHO05D008057 4.5e-60 236.1 265 58.1
ECA238G0838 Erigeron canadensis HOM05D006394 ORTHO05D008057 5.9e-60 235.7 259 59.1
Gorai.011G098800 Gossypium raimondii HOM05D006394 ORTHO05D008057 2.9e-59 233.4 319 52.4
CsaV3_6G047020 Cucumis sativus L. HOM05D006394 ORTHO05D008057 3.8e-59 233.0 309 54.4
Gohir.A10G098200 Gossypium hirsutum HOM05D006394 ORTHO05D008057 3.8e-59 233.0 298 55.7
MELO3C007895.2 Cucumis melo HOM05D006394 ORTHO05D008057 5.0e-59 232.6 314 55.4
CANSAT01G2157 Cannabis sativa HOM05D006394 ORTHO05D008057 6.5e-59 232.3 271 57.9
Lalb_Chr09g0333101 Lupinus albus HOM05D006394 ORTHO05D008057 3.2e-58 229.9 389 45.8
RcHm_v2.0_Chr2g0099531 Rosa chinensis HOM05D006394 ORTHO05D008057 1.0e-56 224.9 385 45.7
COL.COLO4_21919 Corchorus olitorius HOM05D006394 ORTHO05D008057 2.3e-56 223.8 287 53.7
Medtr8g075970 Medicago truncatula HOM05D006394 ORTHO05D008057 2.3e-56 223.8 385 45.7
VMungo0251G2040 Vigna mungo HOM05D006394 ORTHO05D008057 2.3e-56 223.8 321 51.1
PSO541G5117 Papaver somniferum HOM05D006394 ORTHO05D008057 5.2e-56 222.6 304 51.6
Glyma.16G129000 Glycine max HOM05D006394 ORTHO05D008057 3.4e-55 219.9 290 54.1
PSO675G2528 Papaver somniferum HOM05D006394 ORTHO05D008057 4.4e-55 219.5 305 51.8
DCAR_032392 Daucus carota HOM05D006394 ORTHO05D008057 9.8e-55 218.4 387 45.5
TWI53G2075 Tripterygium wilfordii HOM05D006394 ORTHO05D008057 2.2e-54 217.2 293 53.9
arahy.Tifrunner.gnm1.ann1.SHNU8N Arachis hypogaea HOM05D006394 ORTHO05D008057 8.3e-54 215.3 267 55.1
arahy.Tifrunner.gnm1.ann1.VDMC0V Arachis hypogaea HOM05D006394 ORTHO05D008057 8.3e-54 215.3 267 55.1
Ca_22372_v3 Cicer arietinum L. HOM05D006394 ORTHO05D008057 2.4e-53 213.8 391 43.7
Psat4g099000 Pisum sativum HOM05D006394 ORTHO05D008057 2.0e-52 210.7 386 43.0
Lj4g0024758 Lotus japonicus HOM05D006394 ORTHO05D008057 2.7e-52 210.3 298 52.0
CDE04G0153 Ceratophyllum demersum HOM05D006394 ORTHO05D008057 1.7e-51 207.6 247 56.7
FAN26G2471 Fragaria x ananassa HOM05D006394 ORTHO05D008057 1.7e-51 207.6 251 55.8
Glyma.02G048900 Glycine max HOM05D006394 ORTHO05D008057 1.1e-50 204.9 274 52.9
PGR102G2413 Punica granatum HOM05D006394 ORTHO05D008057 1.9e-50 204.1 286 51.4
FvH4_1g11930 Fragaria vesca HOM05D006394 ORTHO05D008057 2.5e-50 203.8 251 55.0
FAN19G0259 Fragaria x ananassa HOM05D006394 ORTHO05D008057 3.3e-50 203.4 251 55.0
Nn6g32361 Nelumbo nucifera HOM05D006394 ORTHO05D008057 3.3e-50 203.4 302 42.4
HPP92_007113 Vanilla planifolia HOM05D006394 ORTHO05D008057 4.3e-50 203.0 242 53.7
Lj2C467T3 Lonicera japonica HOM05D006394 ORTHO05D008057 4.7e-49 199.5 375 35.2
EL10As8g23834 Beta vulgaris HOM05D006394 ORTHO05D008057 1.4e-48 198.0 319 48.3
FAN28G2242 Fragaria x ananassa HOM05D006394 ORTHO05D008057 4.0e-48 196.4 251 55.0
FAN23G1778 Fragaria x ananassa HOM05D006394 ORTHO05D008057 1.5e-47 194.5 250 55.6
Hma1.2p1_0743F.1_g211600 Hydrangea macrophylla HOM05D006394 ORTHO05D008057 2.6e-47 193.7 374 36.6
vmacro21917 Vaccinium macrocarpon HOM05D006394 ORTHO05D008057 3.4e-47 193.4 377 36.9
PGSC0003DMG400022563 Solanum tuberosum HOM05D006394 ORTHO05D008057 5.7e-47 192.6 306 40.5
CSS0039773 Camellia sinensis var. sinensis HOM05D006394 ORTHO05D008057 7.0e-45 185.7 377 36.1
THA.LOC104804261 Tarenaya hassleriana HOM05D006394 ORTHO05D008057 2.1e-41 174.1 241 52.7
Actinidia28701 Actinidia chinensis HOM05D006394 ORTHO05D008057 8.9e-40 168.7 371 33.2
AL3G51010 Arabidopsis lyrata HOM05D006394 ORTHO05D008057 8.9e-40 168.7 264 47.7
Hund16487 Selenicereus undatus HOM05D006394 ORTHO05D008057 1.2e-39 168.3 290 46.6
AT2G17975 Arabidopsis thaliana HOM05D006394 ORTHO05D008057 4.4e-39 166.4 264 46.6
BcaB03g16582 Brassica carinata HOM05D006394 ORTHO05D008057 9.8e-39 165.2 265 47.5
QL06p032614 Quercus lobata HOM05D006394 ORTHO05D008057 2.2e-38 164.1 285 37.2
Thhalv10022807m.g Eutrema salsugineum HOM05D006394 ORTHO05D008057 3.7e-38 163.3 264 47.0
Carub.0003s3211 Capsella rubella HOM05D006394 ORTHO05D008057 4.9e-38 162.9 239 50.2
Aa31LG8G15150 Aethionema arabicum HOM05D006394 ORTHO05D008057 6.4e-38 162.5 294 44.9
Sp3g31400 Schrenkiella parvula HOM05D006394 ORTHO05D008057 8.3e-38 162.2 239 49.8
Sabra05G0094200 Salix brachista HOM05D006394 ORTHO05D008057 9.2e-37 158.7 281 33.8
ClCG01G020230 Citrullus lanatus HOM05D006394 ORTHO05D008057 1.2e-36 158.3 293 38.9
Sc16g0002110 Simmondsia chinensis HOM05D006394 ORTHO05D008057 1.6e-36 157.9 242 38.8
C07p05000 Brassica napus HOM05D006394 ORTHO05D008057 4.6e-36 156.4 264 46.2
BcaC06g36350 Brassica carinata HOM05D006394 ORTHO05D008057 6.0e-36 156.0 264 46.2
Sed0000291 Sechium edule HOM05D006394 ORTHO05D008057 5.0e-35 152.9 280 36.1
TAR365G0979 Trochodendron aralioides HOM05D006394 ORTHO05D008057 6.6e-35 152.5 318 36.2
BolC7t40901H Brassica oleracea HOM05D006394 ORTHO05D008057 8.6e-35 152.1 264 45.8
Cpa.g.sc6.241 Carica papaya HOM05D006394 ORTHO05D008057 1.9e-34 151.0 275 35.3
CARHR108450 Cardamine hirsuta HOM05D006394 ORTHO05D008057 3.3e-34 150.2 237 47.7
TAR133G0002 Trochodendron aralioides HOM05D006394 ORTHO05D008057 5.6e-34 149.4 222 42.3
MD02G1133300 Malus domestica HOM05D006394 ORTHO05D008057 3.6e-33 146.7 394 29.2
A07p02700 Brassica napus HOM05D006394 ORTHO05D008057 1.1e-32 145.2 247 47.0
BraA07t28070Z Brassica rapa HOM05D006394 ORTHO05D008057 1.1e-32 145.2 247 47.0
Hma1.2p1_0589F.1_g184775 Hydrangea macrophylla HOM05D006394 ORTHO05D008057 5.2e-32 142.9 194 42.3
TPR.G30047 Trifolium pratense HOM05D006394 ORTHO05D008057 8.9e-32 142.1 385 31.4
SMO347G0374 Selaginella moellendorffii HOM05D006394 ORTHO05D008057 2.2e-30 137.5 239 49.0
Manes.01G145300 Manihot esculenta HOM05D006394 ORTHO05D008057 3.5e-28 130.2 204 40.7
Phvul.003G262300 Phaseolus vulgaris HOM05D006394 ORTHO05D008057 1.3e-27 128.3 203 40.9
unitig_8.g2966 Utricularia gibba HOM05D006394 ORTHO05D008057 5.6e-26 122.9 264 34.5
Os04g0110600 Oryza sativa ssp. japonica HOM05D006394 ORTHO05D008057 1.2e-23 115.2 173 39.9
Lsat_1_v5_gn_4_146641 Lactuca sativa HOM05D006394 ORTHO05D008057 2.0e-23 114.4 258 32.9
Zm00001eb418470 Zea mays HOM05D006394 ORTHO05D008057 4.4e-23 113.2 169 39.6
Zm00001eb089410 Zea mays HOM05D006394 ORTHO05D008057 3.8e-22 110.2 174 38.5
Zm00001eb411540 Zea mays HOM05D006394 ORTHO05D008057 1.1e-21 108.6 169 38.5
ATR0421G001 Amborella trichopoda HOM05D006394 ORTHO05D008057 7.8e-20 102.4 48 91.7
CSS0034598 Camellia sinensis var. sinensis HOM05D006394 ORTHO05D008057 7.8e-20 102.4 49 91.8
Sopen04g013660 Solanum pennellii HOM05D006394 ORTHO05D008057 1.1e-18 98.6 89 52.8
Oeu048467.1 Olea europaea HOM05D006394 ORTHO05D008057 1.3e-11 75.1 115 46.1
Actinidia31001 Actinidia chinensis HOM05D006394 ORTHO05D008057 4.3e-10 70.1 166 31.9
Solyc10g038030.3 Solanum lycopersicum HOM05D006394 ORTHO05D008057 4.3e-10 70.1 117 35.9
Sopen04g013620 Solanum pennellii HOM05D006394 ORTHO05D008057 4.3e-10 70.1 80 43.8
CBR_g22407 Chara braunii HOM05D006394 ORTHO05D008057 2.8e-09 67.4 83 43.4
MBI05_g15342_MAGBIO Magnolia biondii HOM05D006394 ORTHO05D008057 4.5e-07 60.1 79 39.2
CBR_g82288 Chara braunii HOM05D006394 ORTHO05D008057 8.4e-06 55.8 34 61.8
Lalb_Chr08g0243981 Lupinus albus HOM05D001564 ORTHO05D001439 8.4e-06 55.8 209 25.8


User provided reference genes

Program Settings