Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold136G35048 Striga asiatica HOM05D045704 ORTHO05D000285 7.2e-133 477.2 240 100.0
SGA_v2.0_scaffold119G32761 Striga asiatica HOM05D045704 ORTHO05D000285 5.3e-35 152.1 86 86.0
QL04p079613 Quercus lobata HOM05D000876 ORTHO05D000285 8.5e-17 91.7 192 36.5
CANSAT21G1745 Cannabis sativa HOM05D000876 ORTHO05D000285 1.1e-16 91.3 206 29.6
CANSAT25G2261 Cannabis sativa HOM05D000876 ORTHO05D000285 9.4e-16 88.2 206 29.1
CANSAT11G0810 Cannabis sativa HOM05D000876 ORTHO05D000285 1.6e-15 87.4 206 29.1
CANSAT11G0869 Cannabis sativa HOM05D000876 ORTHO05D000285 1.6e-15 87.4 210 29.5
CANSAT64G0985 Cannabis sativa HOM05D000876 ORTHO05D000285 1.6e-15 87.4 210 29.5
QL08p029247 Quercus lobata HOM05D013302 ORTHO05D015047 1.6e-15 87.4 192 34.9
QL05p031161 Quercus lobata HOM05D000034 ORTHO05D000037 2.7e-15 86.7 191 31.9
CANSAT78G0895 Cannabis sativa HOM05D000876 ORTHO05D000285 6.1e-15 85.5 199 29.1
Hund23719 Selenicereus undatus HOM05D000876 ORTHO05D000285 1.8e-14 84.0 217 28.1
CANSAT21G2246 Cannabis sativa HOM05D000876 ORTHO05D000285 3.0e-14 83.2 206 28.2
Ciclev10013387m.g Citrus clementina HOM05D000876 ORTHO05D034797 3.0e-14 83.2 202 32.2
Hund08681 Selenicereus undatus HOM05D000876 ORTHO05D000285 4.4e-13 79.3 217 27.6
Atru.chr3.1562 Acer truncatum HOM05D000876 ORTHO05D000285 6.3e-12 75.5 208 28.4
Atru.chr3.1584 Acer truncatum HOM05D000876 ORTHO05D000285 6.3e-12 75.5 208 28.4
Hund14971 Selenicereus undatus HOM05D000876 ORTHO05D000285 6.3e-12 75.5 218 27.1
TAR624G0658 Trochodendron aralioides HOM05D011286 ORTHO05D000285 6.3e-12 75.5 196 30.1
arahy.Tifrunner.gnm1.ann1.NV9TN2 Arachis hypogaea HOM05D000034 ORTHO05D000037 8.2e-12 75.1 191 28.8
Hund30880 Selenicereus undatus HOM05D000876 ORTHO05D000285 5.3e-11 72.4 207 28.5
TAR636G1415 Trochodendron aralioides HOM05D011286 ORTHO05D000285 5.3e-11 72.4 188 29.3
arahy.Tifrunner.gnm1.ann1.D3784E Arachis hypogaea HOM05D000034 ORTHO05D000037 6.9e-11 72.0 191 28.3
Glyma.19G101700 Glycine max HOM05D000876 ORTHO05D000285 6.9e-11 72.0 194 28.4
Ah.01g014380 Amaranthus hybridus HOM05D000876 ORTHO05D002662 1.5e-10 70.9 201 27.4
Glyma.18G110601 Glycine max HOM05D000876 ORTHO05D000285 1.5e-10 70.9 185 28.6
Glyma.18G094800 Glycine max HOM05D000876 ORTHO05D000285 2.0e-10 70.5 194 27.8
TAR629G0381 Trochodendron aralioides HOM05D011286 ORTHO05D000285 3.4e-10 69.7 188 28.7
Hund08047 Selenicereus undatus HOM05D000876 ORTHO05D002662 4.5e-10 69.3 215 24.7
QL06p033300 Quercus lobata HOM05D000876 ORTHO05D000285 1.0e-09 68.2 196 27.6
Hund26024 Selenicereus undatus HOM05D000876 ORTHO05D002662 1.0e-09 68.2 211 26.1
Ah.03g141330 Amaranthus hybridus HOM05D000876 ORTHO05D000285 1.3e-09 67.8 205 26.3
Ah.10g031690 Amaranthus hybridus HOM05D000034 ORTHO05D000285 1.3e-09 67.8 205 26.3
arahy.Tifrunner.gnm1.ann1.T11VTH Arachis hypogaea HOM05D000034 ORTHO05D000037 1.7e-09 67.4 188 28.7
Gorai.002G171600 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.7e-09 67.4 206 27.7
QL03p014458 Quercus lobata HOM05D000876 ORTHO05D000285 1.7e-09 67.4 192 26.6
Gorai.010G149000 Gossypium raimondii HOM05D000876 ORTHO05D000285 2.9e-09 66.6 197 26.9
Hma1.2p1_0148F.1_g066070 Hydrangea macrophylla HOM05D000876 ORTHO05D000285 2.9e-09 66.6 202 28.7
Hma1.2p1_0148F.1_g066080 Hydrangea macrophylla HOM05D000876 ORTHO05D000285 2.9e-09 66.6 202 28.7
Medtr1g080080 Medicago truncatula HOM05D000876 ORTHO05D000285 2.9e-09 66.6 199 26.1
Medtr2g086350 Medicago truncatula HOM05D000876 ORTHO05D000285 2.9e-09 66.6 199 26.1
Medtr5g054570 Medicago truncatula HOM05D000876 ORTHO05D000285 2.9e-09 66.6 199 26.1
Potri.008G074066 Populus trichocarpa HOM05D000876 ORTHO05D000285 2.9e-09 66.6 203 29.1
Medtr4g046743 Medicago truncatula HOM05D000876 ORTHO05D000285 3.8e-09 66.2 188 25.5
QL01p041709 Quercus lobata HOM05D000876 ORTHO05D000285 3.8e-09 66.2 196 27.0
CANSAT54G1231 Cannabis sativa HOM05D000876 ORTHO05D000285 5.0e-09 65.9 201 23.9
Medtr3g110155 Medicago truncatula HOM05D000876 ORTHO05D000285 5.0e-09 65.9 207 28.0
Medtr8g006585 Medicago truncatula HOM05D000876 ORTHO05D000285 5.0e-09 65.9 207 28.0
Medtr8g006695 Medicago truncatula HOM05D000876 ORTHO05D000285 5.0e-09 65.9 207 28.0
CANSAT56G2973 Cannabis sativa HOM05D000876 ORTHO05D000285 6.5e-09 65.5 195 24.6
Lj2g0008174 Lotus japonicus HOM05D000876 ORTHO05D000285 6.5e-09 65.5 184 30.4
Medtr2g018710 Medicago truncatula HOM05D000876 ORTHO05D000285 6.5e-09 65.5 199 26.1
Glyma.02G166900 Glycine max HOM05D000876 ORTHO05D000285 8.5e-09 65.1 170 28.8
Hund26462 Selenicereus undatus HOM05D000876 ORTHO05D002662 8.5e-09 65.1 194 27.3
Gorai.006G019900 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.4e-08 64.3 197 25.9
Gorai.004G102900 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.9e-08 63.9 197 25.9
arahy.Tifrunner.gnm1.ann1.AG0B9Q Arachis hypogaea HOM05D000034 ORTHO05D000285 2.5e-08 63.5 199 28.6
Gorai.012G070700 Gossypium raimondii HOM05D000876 ORTHO05D000285 2.5e-08 63.5 197 26.4
Gorai.N004200 Gossypium raimondii HOM05D000876 ORTHO05D000285 2.5e-08 63.5 194 24.7
Medtr2g435870 Medicago truncatula HOM05D000876 ORTHO05D000285 2.5e-08 63.5 188 26.1
Atru.chr7.239 Acer truncatum HOM05D000034 ORTHO05D000037 3.2e-08 63.2 208 27.9
arahy.Tifrunner.gnm1.ann1.2911W9 Arachis hypogaea HOM05D000876 ORTHO05D000285 3.2e-08 63.2 191 27.2
arahy.Tifrunner.gnm1.ann1.2F6TQ9 Arachis hypogaea HOM05D000876 ORTHO05D000285 4.2e-08 62.8 199 28.6
arahy.Tifrunner.gnm1.ann1.I2TZJW Arachis hypogaea HOM05D000876 ORTHO05D000285 4.2e-08 62.8 199 28.6
FAN05G0722 Fragaria x ananassa HOM05D000876 ORTHO05D000285 4.2e-08 62.8 211 27.0
Gorai.005G209400 Gossypium raimondii HOM05D000876 ORTHO05D000285 4.2e-08 62.8 202 25.7
Gorai.013G094800 Gossypium raimondii HOM05D000876 ORTHO05D000285 4.2e-08 62.8 208 25.5
QL08p009302 Quercus lobata HOM05D000876 ORTHO05D000285 4.2e-08 62.8 192 26.0
FvH4_5g23913 Fragaria vesca HOM05D000876 ORTHO05D000285 5.5e-08 62.4 206 26.2
Gorai.001G159400 Gossypium raimondii HOM05D000876 ORTHO05D000285 5.5e-08 62.4 219 26.0
TPR.G30704 Trifolium pratense HOM05D000876 ORTHO05D000285 5.5e-08 62.4 197 26.9
TAR636G0716 Trochodendron aralioides HOM05D011286 ORTHO05D000285 5.5e-08 62.4 162 29.0
arahy.Tifrunner.gnm1.ann1.PEG6DJ Arachis hypogaea HOM05D000034 ORTHO05D000037 7.2e-08 62.0 192 26.6
FAN17G2644 Fragaria x ananassa HOM05D000876 ORTHO05D000285 7.2e-08 62.0 211 25.6
arahy.Tifrunner.gnm1.ann1.GG5U8X Arachis hypogaea HOM05D000876 ORTHO05D000285 9.4e-08 61.6 199 28.1
arahy.Tifrunner.gnm1.ann1.GL17HH Arachis hypogaea HOM05D000034 ORTHO05D000037 9.4e-08 61.6 191 25.7
arahy.Tifrunner.gnm1.ann1.R6BV2D Arachis hypogaea HOM05D000876 ORTHO05D000285 9.4e-08 61.6 199 28.1
Gorai.007G232100 Gossypium raimondii HOM05D000876 ORTHO05D000285 9.4e-08 61.6 205 27.8
Lj1g0007225 Lotus japonicus HOM05D000034 ORTHO05D000037 1.2e-07 61.2 186 28.0
Lj2g0028060 Lotus japonicus HOM05D000034 ORTHO05D000037 1.2e-07 61.2 186 28.0
Aqoxy4G02707 Aquilegia oxysepala HOM05D000876 ORTHO05D000285 1.6e-07 60.8 192 26.6
arahy.Tifrunner.gnm1.ann1.Z2QP4M Arachis hypogaea HOM05D000034 ORTHO05D000037 1.6e-07 60.8 197 26.9
CANSAT78G1247 Cannabis sativa HOM05D000876 ORTHO05D000285 1.6e-07 60.8 192 24.0
FAN17G2734 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.6e-07 60.8 206 27.2
RcHm_v2.0_Chr4g0428601 Rosa chinensis HOM05D000876 ORTHO05D000285 1.6e-07 60.8 211 23.2
TAR371G0686 Trochodendron aralioides HOM05D011286 ORTHO05D000285 1.6e-07 60.8 149 30.2
Gorai.013G171200 Gossypium raimondii HOM05D000876 ORTHO05D000285 2.1e-07 60.5 199 25.1
Prupe.5G207000 Prunus persica HOM05D000876 ORTHO05D000285 2.1e-07 60.5 205 24.9
Dinv34430 Davidia involucrata HOM05D000876 ORTHO05D000285 2.7e-07 60.1 111 32.4
Gorai.006G056900 Gossypium raimondii HOM05D000876 ORTHO05D000285 2.7e-07 60.1 199 25.6
Sed0005915 Sechium edule HOM05D000876 ORTHO05D000285 2.7e-07 60.1 201 27.9
Atru.chr11.998 Acer truncatum HOM05D000876 ORTHO05D000285 3.6e-07 59.7 192 26.0
Gorai.011G116300 Gossypium raimondii HOM05D000876 ORTHO05D000285 3.6e-07 59.7 195 25.1
Prupe.5G020800 Prunus persica HOM05D000876 ORTHO05D000285 3.6e-07 59.7 205 24.9
Gorai.007G190400 Gossypium raimondii HOM05D000876 ORTHO05D000285 4.7e-07 59.3 209 23.9
Gorai.012G109800 Gossypium raimondii HOM05D000876 ORTHO05D000285 4.7e-07 59.3 199 25.6
CSS0033511 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 6.1e-07 58.9 195 26.2
Sc20g0002990 Simmondsia chinensis HOM05D018396 ORTHO05D018884 6.1e-07 58.9 190 25.8
Atru.chr2.2393 Acer truncatum HOM05D000034 ORTHO05D000037 8.0e-07 58.5 199 22.1
AT5G05800 Arabidopsis thaliana HOM05D000876 ORTHO05D000285 8.0e-07 58.5 184 28.8
CSS0001395 Camellia sinensis var. sinensis HOM05D021170 ORTHO05D000285 8.0e-07 58.5 186 26.3
FAN14G5489 Fragaria x ananassa HOM05D000876 ORTHO05D000285 8.0e-07 58.5 209 24.9
Gorai.002G171500 Gossypium raimondii HOM05D000876 ORTHO05D000285 8.0e-07 58.5 195 25.6
MD15G1314200 Malus domestica HOM05D000876 ORTHO05D000285 8.0e-07 58.5 206 26.7
Rhsim04G0111300 Rhododendron simsii HOM05D000034 ORTHO05D000037 8.0e-07 58.5 179 25.1
CANSAT35G1570 Cannabis sativa HOM05D000876 ORTHO05D000285 1.0e-06 58.2 184 24.5
Carub.0003s3346 Capsella rubella HOM05D000876 ORTHO05D000285 1.0e-06 58.2 61 42.6
Medtr1g016370 Medicago truncatula HOM05D000876 ORTHO05D000285 1.0e-06 58.2 202 28.7
Nn8g39983 Nelumbo nucifera HOM05D000876 ORTHO05D000285 1.0e-06 58.2 226 25.7
AL6G15700 Arabidopsis lyrata HOM05D000876 ORTHO05D000285 1.4e-06 57.8 62 46.8
AT3G11310 Arabidopsis thaliana HOM05D000876 ORTHO05D000285 1.4e-06 57.8 62 43.5
CSS0005241 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 1.4e-06 57.8 113 31.9
Carub.0006s0470 Capsella rubella HOM05D000876 ORTHO05D000285 1.4e-06 57.8 190 24.2
COL.COLO4_28651 Corchorus olitorius HOM05D009321 ORTHO05D000285 1.4e-06 57.8 161 25.5
GSVIVG01016378001 Vitis vinifera HOM05D000876 ORTHO05D000285 1.4e-06 57.8 63 41.3
arahy.Tifrunner.gnm1.ann1.7Y6611 Arachis hypogaea HOM05D000034 ORTHO05D000037 1.8e-06 57.4 199 27.6
Gorai.005G108600 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.8e-06 57.4 195 24.6
Gorai.006G154000 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.8e-06 57.4 191 26.7
AT3G11290 Arabidopsis thaliana HOM05D000876 ORTHO05D000285 2.3e-06 57.0 61 42.6
Gorai.008G062400 Gossypium raimondii HOM05D000876 ORTHO05D000285 2.3e-06 57.0 199 24.1
Lj1g0019277 Lotus japonicus HOM05D000876 ORTHO05D000285 2.3e-06 57.0 189 24.3
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 2.3e-06 57.0 195 29.7
Sp3g09570 Schrenkiella parvula HOM05D000876 ORTHO05D000285 2.3e-06 57.0 66 42.4
Hund09957 Selenicereus undatus HOM05D000876 ORTHO05D002662 2.3e-06 57.0 167 28.1
CARHR207460 Cardamine hirsuta HOM05D000876 ORTHO05D000285 3.0e-06 56.6 66 42.4
Glyma.01G052000 Glycine max HOM05D000876 ORTHO05D000285 3.0e-06 56.6 208 25.5
Gorai.009G359600 Gossypium raimondii HOM05D000876 ORTHO05D000285 3.0e-06 56.6 199 24.6
Psat4g162920 Pisum sativum HOM05D000876 ORTHO05D000285 3.0e-06 56.6 195 24.1
Actinidia33947 Actinidia chinensis HOM05D000876 ORTHO05D000285 3.9e-06 56.2 111 32.4
A10p30570 Brassica napus HOM05D000876 ORTHO05D000285 3.9e-06 56.2 83 38.6
CSS0003136 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 3.9e-06 56.2 113 31.0
Glyma.09G090801 Glycine max HOM05D000876 ORTHO05D000285 3.9e-06 56.2 180 25.6
Prupe.2G245300 Prunus persica HOM05D000876 ORTHO05D000285 3.9e-06 56.2 63 42.9
VMungo1383G2642 Vigna mungo HOM05D000665 ORTHO05D000285 3.9e-06 56.2 76 35.5
AL3G22820 Arabidopsis lyrata HOM05D000876 ORTHO05D000285 5.2e-06 55.8 61 42.6
Hma1.2p1_1123F.1_g259380 Hydrangea macrophylla HOM05D000876 ORTHO05D000285 5.2e-06 55.8 188 25.5
Aa31LG11G6810 Aethionema arabicum HOM05D000876 ORTHO05D000285 6.7e-06 55.5 83 34.9
CANSAT01G0041 Cannabis sativa HOM05D000876 ORTHO05D000285 6.7e-06 55.5 197 21.8
COL.COLO4_20268 Corchorus olitorius HOM05D009321 ORTHO05D000285 6.7e-06 55.5 185 23.2
FvH4_1g28413 Fragaria vesca HOM05D000876 ORTHO05D015047 6.7e-06 55.5 184 25.5
Glyma.18G191100 Glycine max HOM05D000876 ORTHO05D000285 6.7e-06 55.5 184 26.6
Lj5g0006232 Lotus japonicus HOM05D000876 ORTHO05D000285 6.7e-06 55.5 195 30.3
Rhsim08G0056200 Rhododendron simsii HOM05D000034 ORTHO05D000037 6.7e-06 55.5 176 24.4
vmacro11323 Vaccinium macrocarpon HOM05D009321 ORTHO05D000285 6.7e-06 55.5 195 23.1
arahy.Tifrunner.gnm1.ann1.L4SQ9F Arachis hypogaea HOM05D000034 ORTHO05D000037 8.8e-06 55.1 191 24.1
arahy.Tifrunner.gnm1.ann1.M8N6J9 Arachis hypogaea HOM05D000876 ORTHO05D000285 8.8e-06 55.1 183 24.6
BcaC06g32288 Brassica carinata HOM05D000876 ORTHO05D000285 8.8e-06 55.1 62 43.5
BcaNung06184 Brassica carinata HOM05D000876 ORTHO05D000285 8.8e-06 55.1 62 43.5
C09p71030 Brassica napus HOM05D000876 ORTHO05D000285 8.8e-06 55.1 62 43.5
BolC9t59867H Brassica oleracea HOM05D000876 ORTHO05D000285 8.8e-06 55.1 62 43.5
BraA10t45098Z Brassica rapa HOM05D000876 ORTHO05D000285 8.8e-06 55.1 62 43.5
DCAR_026451 Daucus carota HOM05D000876 ORTHO05D000285 8.8e-06 55.1 206 25.2
Phvul.001G240000 Phaseolus vulgaris HOM05D000665 ORTHO05D000285 8.8e-06 55.1 62 38.7
Sp6g37100 Schrenkiella parvula HOM05D000876 ORTHO05D000285 8.8e-06 55.1 62 43.5


User provided reference genes

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