Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold136G34979 Striga asiatica HOM05D000033 ORTHO05D403543 2.8e-85 318.5 156 100.0
SGA_v2.0_scaffold277G46726 Striga asiatica HOM05D000033 ORTHO05D006081 6.3e-21 104.8 78 71.8
Psat3g036480 Pisum sativum HOM05D000033 ORTHO05D006081 3.2e-09 65.9 96 41.7
PGR142G1887 Punica granatum HOM05D000033 ORTHO05D006081 4.2e-09 65.5 89 48.3
CiPaw.09G007300 Carya illinoinensis HOM05D000033 ORTHO05D006081 9.4e-09 64.3 71 52.1
Lj3A1005T43 Lonicera japonica HOM05D000033 ORTHO05D006081 9.4e-09 64.3 69 56.5
Medtr7g103440 Medicago truncatula HOM05D000033 ORTHO05D006081 1.2e-08 63.9 98 41.8
MSTRG.19219 Avicennia marina HOM05D000033 ORTHO05D006081 1.6e-08 63.5 89 43.8
Sabra06G0092100 Salix brachista HOM05D000033 ORTHO05D006081 2.1e-08 63.2 67 56.7
Ca_11612_v3 Cicer arietinum L. HOM05D000033 ORTHO05D006081 3.6e-08 62.4 68 52.9
Eucgr.K02082 Eucalyptus grandis HOM05D000033 ORTHO05D006081 3.6e-08 62.4 86 47.7
Cc06_g05040 Coffea canephora HOM05D000033 ORTHO05D006081 4.7e-08 62.0 89 47.2
Medtr1g061590 Medicago truncatula HOM05D000033 ORTHO05D006081 4.7e-08 62.0 64 54.7
Psat6g074400 Pisum sativum HOM05D000033 ORTHO05D006081 4.7e-08 62.0 64 54.7
MSTRG.5800 Avicennia marina HOM05D000033 ORTHO05D006081 6.1e-08 61.6 63 55.6
Ca_08956_v3 Cicer arietinum L. HOM05D000033 ORTHO05D006081 6.1e-08 61.6 96 40.6
Ca_29662_v3 Cicer arietinum L. HOM05D000033 ORTHO05D006081 6.1e-08 61.6 96 40.6
DCAR_017634 Daucus carota HOM05D000033 ORTHO05D006081 6.1e-08 61.6 99 46.5
Nn6g35088 Nelumbo nucifera HOM05D000033 ORTHO05D006081 6.1e-08 61.6 89 44.9
Hund04047 Selenicereus undatus HOM05D000033 ORTHO05D006081 6.1e-08 61.6 85 48.2
Sc02g0001230 Simmondsia chinensis HOM05D000033 ORTHO05D006081 6.1e-08 61.6 92 42.4
Ciclev10011238m.g Citrus clementina HOM05D000033 ORTHO05D006081 1.0e-07 60.8 64 53.1
Lalb_Chr21g0315381 Lupinus albus HOM05D000033 ORTHO05D006081 1.0e-07 60.8 67 50.7
Potri.006G117200 Populus trichocarpa HOM05D000033 ORTHO05D006081 1.0e-07 60.8 67 56.7
Rhsim03G0083200 Rhododendron simsii HOM05D000033 ORTHO05D006081 1.0e-07 60.8 81 46.9
Dinv37385 Davidia involucrata HOM05D000033 ORTHO05D006081 1.4e-07 60.5 83 48.2
Glyma.03G189800 Glycine max HOM05D000033 ORTHO05D006081 1.4e-07 60.5 64 53.1
Glyma.19G190200 Glycine max HOM05D000033 ORTHO05D006081 1.4e-07 60.5 64 53.1
Oeu038886.1 Olea europaea HOM05D000033 ORTHO05D006081 1.4e-07 60.5 60 58.3
RcHm_v2.0_Chr3g0471741 Rosa chinensis HOM05D000033 ORTHO05D006081 1.4e-07 60.5 104 40.4
SGA_v2.0_scaffold40G15430 Striga asiatica HOM05D000033 ORTHO05D006081 1.4e-07 60.5 60 58.3
TPR.G5687 Trifolium pratense HOM05D000033 ORTHO05D006081 1.4e-07 60.5 64 54.7
Actinidia11322 Actinidia chinensis HOM05D000033 ORTHO05D006081 1.8e-07 60.1 67 56.7
CANSAT80G1590 Cannabis sativa HOM05D000033 ORTHO05D006081 1.8e-07 60.1 67 55.2
FvH4_6g17500 Fragaria vesca HOM05D000033 ORTHO05D006081 2.3e-07 59.7 82 45.1
FAN05G1699 Fragaria x ananassa HOM05D000033 ORTHO05D006081 2.3e-07 59.7 82 45.1
FAN05G3258 Fragaria x ananassa HOM05D000033 ORTHO05D006081 2.3e-07 59.7 82 45.1
FAN09G1738 Fragaria x ananassa HOM05D000033 ORTHO05D006081 2.3e-07 59.7 82 45.1
FAN14G3990 Fragaria x ananassa HOM05D000033 ORTHO05D006081 2.3e-07 59.7 82 45.1
MD12G1097300 Malus domestica HOM05D000033 ORTHO05D006081 2.3e-07 59.7 67 50.7
Duzib093G2155 Durio zibethinus HOM05D000033 ORTHO05D006081 3.0e-07 59.3 76 48.7
Migut.J00494 Erythranthe guttata HOM05D000033 ORTHO05D006081 3.0e-07 59.3 60 56.7
MD14G1094000 Malus domestica HOM05D000033 ORTHO05D006081 3.0e-07 59.3 95 42.1
Nitab4.5_0000680g0020 Nicotiana tabacum HOM05D000033 ORTHO05D006081 3.0e-07 59.3 85 47.1
TAR636G3301 Trochodendron aralioides HOM05D000033 ORTHO05D006081 3.0e-07 59.3 90 42.2
GSVIVG01033749001 Vitis vinifera HOM05D000033 ORTHO05D006081 3.0e-07 59.3 60 56.7
Actinidia39871 Actinidia chinensis HOM05D000033 ORTHO05D006081 4.0e-07 58.9 67 56.7
MSTRG.10341 Avicennia marina HOM05D000033 ORTHO05D006081 4.0e-07 58.9 60 56.7
FAN02G2009 Fragaria x ananassa HOM05D000033 ORTHO05D006081 4.0e-07 58.9 89 42.7
Lj5g0026411 Lotus japonicus HOM05D000033 ORTHO05D006081 4.0e-07 58.9 60 55.0
Nn4g26056 Nelumbo nucifera HOM05D000033 ORTHO05D006081 4.0e-07 58.9 89 43.8
Peaxi162Scf00795g00310 Petunia axillaris HOM05D000033 ORTHO05D006081 4.0e-07 58.9 83 48.2
Phvul.001G185400 Phaseolus vulgaris HOM05D000033 ORTHO05D006081 4.0e-07 58.9 64 53.1
SalBow3G2495 Salvia bowleyana HOM05D000033 ORTHO05D006081 4.0e-07 58.9 60 56.7
VMungo1383G1474 Vigna mungo HOM05D000033 ORTHO05D006081 4.0e-07 58.9 64 53.1
AL4G32740 Arabidopsis lyrata HOM05D000033 ORTHO05D006081 5.2e-07 58.5 66 51.5
AT2G36570 Arabidopsis thaliana HOM05D000033 ORTHO05D006081 5.2e-07 58.5 66 51.5
CSS0031274 Camellia sinensis var. sinensis HOM05D000033 ORTHO05D006081 5.2e-07 58.5 101 41.6
CSS0039918 Camellia sinensis var. sinensis HOM05D000033 ORTHO05D006081 5.2e-07 58.5 101 41.6
AUR62033602 Chenopodium quinoa HOM05D000033 ORTHO05D006081 5.2e-07 58.5 90 43.3
Nn2g13962 Nelumbo nucifera HOM05D000033 ORTHO05D006081 5.2e-07 58.5 81 48.1
QL07p040896 Quercus lobata HOM05D000033 ORTHO05D006081 5.2e-07 58.5 83 45.8
Atru.chr8.1666 Acer truncatum HOM05D000033 ORTHO05D006081 6.7e-07 58.2 93 44.1
arahy.Tifrunner.gnm1.ann1.490CYA Arachis hypogaea HOM05D000033 ORTHO05D006081 6.7e-07 58.2 60 55.0
arahy.Tifrunner.gnm1.ann1.YPGZ9D Arachis hypogaea HOM05D000033 ORTHO05D006081 6.7e-07 58.2 60 55.0
ClCG10G019490 Citrullus lanatus HOM05D000033 ORTHO05D006081 6.7e-07 58.2 60 56.7
MELO3C009424.2 Cucumis melo HOM05D000033 ORTHO05D006081 6.7e-07 58.2 60 56.7
CsaV3_3G036700 Cucumis sativus L. HOM05D000033 ORTHO05D006081 6.7e-07 58.2 60 56.7
DCAR_015028 Daucus carota HOM05D000033 ORTHO05D006081 6.7e-07 58.2 106 40.6
Oeu018706.1 Olea europaea HOM05D000033 ORTHO05D006081 6.7e-07 58.2 90 44.4
Prupe.7G120500 Prunus persica HOM05D000033 ORTHO05D006081 6.7e-07 58.2 60 55.0
Sp4g18860 Schrenkiella parvula HOM05D000033 ORTHO05D006081 6.7e-07 58.2 64 48.4
Sed0008478 Sechium edule HOM05D000033 ORTHO05D006081 6.7e-07 58.2 60 56.7
Aa31LG5G21770 Aethionema arabicum HOM05D000033 ORTHO05D006081 8.8e-07 57.8 64 48.4
arahy.Tifrunner.gnm1.ann1.BP98XH Arachis hypogaea HOM05D000033 ORTHO05D006081 8.8e-07 57.8 60 55.0
arahy.Tifrunner.gnm1.ann1.H2EMZS Arachis hypogaea HOM05D000033 ORTHO05D006081 8.8e-07 57.8 60 55.0
EL10Ac7g16767 Beta vulgaris HOM05D000033 ORTHO05D006081 8.8e-07 57.8 59 55.9
Carub.0004s1839 Capsella rubella HOM05D000033 ORTHO05D006081 8.8e-07 57.8 66 51.5
AUR62037896 Chenopodium quinoa HOM05D000033 ORTHO05D006081 8.8e-07 57.8 59 55.9
Duzib128G0447 Durio zibethinus HOM05D000033 ORTHO05D006081 8.8e-07 57.8 60 55.0
Thhalv10016353m.g Eutrema salsugineum HOM05D000033 ORTHO05D006081 8.8e-07 57.8 59 52.5
Glyma.13G150000 Glycine max HOM05D000033 ORTHO05D006081 8.8e-07 57.8 60 55.0
Gohir.A01G210300 Gossypium hirsutum HOM05D000033 ORTHO05D006081 8.8e-07 57.8 60 55.0
Gohir.D01G199200 Gossypium hirsutum HOM05D000033 ORTHO05D006081 8.8e-07 57.8 60 55.0
Gorai.002G243600 Gossypium raimondii HOM05D000033 ORTHO05D006081 8.8e-07 57.8 60 55.0
Manes.09G060900 Manihot esculenta HOM05D000033 ORTHO05D006081 8.8e-07 57.8 60 55.0
Thecc.05G078800 Theobroma cacao HOM05D000033 ORTHO05D006081 8.8e-07 57.8 60 55.0
Nitab4.5_0005344g0010 Nicotiana tabacum HOM05D000033 ORTHO05D006081 1.2e-06 57.4 60 55.0
Solyc09g008860.4 Solanum lycopersicum HOM05D000033 ORTHO05D006081 1.2e-06 57.4 88 42.0
TAR633G0274 Trochodendron aralioides HOM05D000033 ORTHO05D006081 1.2e-06 57.4 60 56.7
BcaB01g03826 Brassica carinata HOM05D000033 ORTHO05D006081 1.5e-06 57.0 59 52.5
BcaC01g05649 Brassica carinata HOM05D000033 ORTHO05D006081 1.5e-06 57.0 59 52.5
BcaC01g05650 Brassica carinata HOM05D000033 ORTHO05D006081 1.5e-06 57.0 59 52.5
A03p20190 Brassica napus HOM05D000033 ORTHO05D006081 1.5e-06 57.0 59 52.5
C03p23670 Brassica napus HOM05D000033 ORTHO05D006081 1.5e-06 57.0 59 52.5
BolC3t14762H Brassica oleracea HOM05D000033 ORTHO05D006081 1.5e-06 57.0 59 52.5
BraA03t11270Z Brassica rapa HOM05D000033 ORTHO05D006081 1.5e-06 57.0 59 52.5
COL.COLO4_22292 Corchorus olitorius HOM05D000033 ORTHO05D006081 1.5e-06 57.0 60 55.0
Dinv35858 Davidia involucrata HOM05D000033 ORTHO05D006081 1.5e-06 57.0 94 42.6
SEGI_40541 Sequoiadendron giganteum HOM05D000033 ORTHO05D006081 1.5e-06 57.0 103 39.8
Aqoxy1G00971_Aqoxy1G00972 Aquilegia oxysepala HOM05D000033 ORTHO05D006081 2.0e-06 56.6 60 55.0
Hma1.2p1_0084F.1_g043040 Hydrangea macrophylla HOM05D000033 ORTHO05D006081 2.0e-06 56.6 64 53.1
PSO063G3046 Papaver somniferum HOM05D000033 ORTHO05D006081 2.0e-06 56.6 67 49.3
PSO339G1542 Papaver somniferum HOM05D000033 ORTHO05D006081 2.0e-06 56.6 67 49.3
Phvul.007G224300 Phaseolus vulgaris HOM05D000033 ORTHO05D006081 2.0e-06 56.6 64 53.1
VMungo0720G2353 Vigna mungo HOM05D000033 ORTHO05D006081 2.0e-06 56.6 64 53.1
Ah.15g091200 Amaranthus hybridus HOM05D000033 ORTHO05D006081 2.6e-06 56.2 98 40.8
ATR0820G135 Amborella trichopoda HOM05D000033 ORTHO05D006081 2.6e-06 56.2 66 50.0
Haze_19514 Corylus avellana HOM05D000033 ORTHO05D006081 2.6e-06 56.2 64 53.1
Nn4g23764 Nelumbo nucifera HOM05D000033 ORTHO05D006081 2.6e-06 56.2 60 53.3
PSO339G6528 Papaver somniferum HOM05D000033 ORTHO05D006081 2.6e-06 56.2 89 43.8
Sopen09g003650 Solanum pennellii HOM05D000033 ORTHO05D006081 2.6e-06 56.2 60 56.7
PGSC0003DMG400002689 Solanum tuberosum HOM05D000033 ORTHO05D006081 2.6e-06 56.2 60 56.7
CAN.G824.43 Capsicum annuum HOM05D000033 ORTHO05D006081 3.3e-06 55.8 100 42.0
Cpa.g.sc5.100 Carica papaya HOM05D000033 ORTHO05D006081 3.3e-06 55.8 64 53.1
PSO384G3725 Papaver somniferum HOM05D000033 ORTHO05D006081 3.3e-06 55.8 90 42.2
SalBow5G4690 Salvia bowleyana HOM05D000033 ORTHO05D006081 3.3e-06 55.8 61 52.5
THA.LOC104827490 Tarenaya hassleriana HOM05D000033 ORTHO05D006081 3.3e-06 55.8 60 53.3
TWI13G0015 Tripterygium wilfordii HOM05D000033 ORTHO05D006081 3.3e-06 55.8 60 53.3
TWI74G0838 Tripterygium wilfordii HOM05D000033 ORTHO05D006081 3.3e-06 55.8 60 53.3
HanXRQChr01g0028411 Helianthus annuus HOM05D000033 ORTHO05D006081 4.4e-06 55.5 54 55.6
Oeu040554.1 Olea europaea HOM05D000033 ORTHO05D006081 4.4e-06 55.5 64 53.1
CARHR130860 Cardamine hirsuta HOM05D000033 ORTHO05D006081 5.7e-06 55.1 59 50.8
Pp3c25_15360 Physcomitrium patens HOM05D000033 ORTHO05D004067 5.7e-06 55.1 78 44.9
vmacro07337 Vaccinium macrocarpon HOM05D000033 ORTHO05D006081 5.7e-06 55.1 82 45.1
CSS0018756 Camellia sinensis var. sinensis HOM05D000033 ORTHO05D006081 7.5e-06 54.7 64 51.6
CSS0032262 Camellia sinensis var. sinensis HOM05D000033 ORTHO05D006081 7.5e-06 54.7 64 51.6
Cfa016512 Carpinus fangiana HOM05D000033 ORTHO05D006081 7.5e-06 54.7 64 53.1
MBI17_g20224_MAGBIO Magnolia biondii HOM05D000033 ORTHO05D006081 9.7e-06 54.3 55 54.5


User provided reference genes

Program Settings