Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold136G34977 Striga asiatica HOM05D005916 ORTHO05D007168 5.5e-127 457.6 223 100.0
SGA_v2.0_scaffold69G23310 Striga asiatica HOM05D005916 ORTHO05D007168 1.8e-101 372.9 199 92.0
MSTRG.8396 Avicennia marina HOM05D005916 ORTHO05D007168 4.7e-86 321.6 204 79.9
Migut.F01212 Erythranthe guttata HOM05D005916 ORTHO05D007168 4.5e-81 305.1 209 76.1
DCAR_014647 Daucus carota HOM05D005916 ORTHO05D007168 1.2e-78 297.0 200 75.0
Phvul.007G063000 Phaseolus vulgaris HOM05D005916 ORTHO05D007168 2.7e-78 295.8 208 74.0
VMungo0720G1184 Vigna mungo HOM05D005916 ORTHO05D007168 3.6e-78 295.4 208 74.5
Gorai.001G052400 Gossypium raimondii HOM05D005916 ORTHO05D007168 2.3e-77 292.7 205 75.6
Gohir.D07G049300 Gossypium hirsutum HOM05D005916 ORTHO05D007168 5.2e-77 291.6 205 75.6
Glyma.10G242500 Glycine max HOM05D005916 ORTHO05D007168 8.8e-77 290.8 207 71.5
TPR.G26100 Trifolium pratense HOM05D005916 ORTHO05D007168 8.8e-77 290.8 202 75.7
Psat6g202080 Pisum sativum HOM05D005916 ORTHO05D007168 1.2e-76 290.4 207 73.4
Thecc.03G145100 Theobroma cacao HOM05D005916 ORTHO05D007168 1.2e-76 290.4 211 73.9
Oeu046440.1 Olea europaea HOM05D005916 ORTHO05D007168 1.5e-76 290.0 201 74.1
Ciclev10032791m.g Citrus clementina HOM05D005916 ORTHO05D007168 3.4e-76 288.9 202 74.3
vmacro09932 Vaccinium macrocarpon HOM05D005916 ORTHO05D007168 7.5e-76 287.7 227 67.4
CSS0012195 Camellia sinensis var. sinensis HOM05D005916 ORTHO05D007168 9.8e-76 287.3 201 74.1
Ca_10837_v3 Cicer arietinum L. HOM05D005916 ORTHO05D007168 2.8e-75 285.8 203 72.9
Dinv34531 Davidia involucrata HOM05D005916 ORTHO05D007168 6.3e-75 284.6 205 72.2
COL.COLO4_37304 Corchorus olitorius HOM05D005916 ORTHO05D007168 8.3e-75 284.3 210 72.4
QL09p027336 Quercus lobata HOM05D005916 ORTHO05D007168 8.3e-75 284.3 202 71.3
Lj5g0003841 Lotus japonicus HOM05D005916 ORTHO05D007168 1.1e-74 283.9 206 69.9
Potri.012G113400 Populus trichocarpa HOM05D005916 ORTHO05D007168 1.4e-74 283.5 203 72.4
FAN06G3885 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.8e-74 283.1 189 75.7
RcHm_v2.0_Chr1g0373201 Rosa chinensis HOM05D005916 ORTHO05D007168 1.8e-74 283.1 203 73.4
FAN10G1904 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.4e-74 282.7 206 69.9
Cc00_g13060 Coffea canephora HOM05D005916 ORTHO05D007168 9.2e-74 280.8 205 73.7
Aqoxy3G02650 Aquilegia oxysepala HOM05D005916 ORTHO05D007168 1.6e-73 280.0 185 75.7
arahy.Tifrunner.gnm1.ann1.VH0MPJ Arachis hypogaea HOM05D005916 ORTHO05D007168 2.0e-73 279.6 209 71.3
FAN01G2833 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.7e-73 279.3 206 71.8
Cpa.g.sc13.218 Carica papaya HOM05D005916 ORTHO05D007168 3.5e-73 278.9 211 72.5
Sabra15G0132700 Salix brachista HOM05D005916 ORTHO05D007168 4.5e-73 278.5 193 74.6
PSO782G0331 Papaver somniferum HOM05D005916 ORTHO05D007168 5.9e-73 278.1 203 70.9
Eucgr.A02936 Eucalyptus grandis HOM05D005916 ORTHO05D007168 7.7e-73 277.7 205 70.2
Gohir.A07G044800 Gossypium hirsutum HOM05D005916 ORTHO05D007168 1.0e-72 277.3 205 71.7
Potri.015G110900 Populus trichocarpa HOM05D005916 ORTHO05D007168 2.3e-72 276.2 190 74.2
CsaV3_4G004400 Cucumis sativus L. HOM05D005916 ORTHO05D007168 2.9e-72 275.8 200 70.0
Carub.0006s1828 Capsella rubella HOM05D005916 ORTHO05D007168 3.8e-72 275.4 205 70.7
MD01G1174300 Malus domestica HOM05D005916 ORTHO05D007168 3.8e-72 275.4 205 69.8
PSO063G1306 Papaver somniferum HOM05D005916 ORTHO05D007168 3.8e-72 275.4 203 70.4
Atru.chr6.1973 Acer truncatum HOM05D005916 ORTHO05D007168 5.0e-72 275.0 199 71.4
Ah.01g021910 Amaranthus hybridus HOM05D005916 ORTHO05D007168 6.6e-72 274.6 201 72.1
Thhalv10014735m.g Eutrema salsugineum HOM05D005916 ORTHO05D007168 6.6e-72 274.6 203 70.9
FvH4_7g26530 Fragaria vesca HOM05D005916 ORTHO05D007168 8.6e-72 274.2 190 73.7
Manes.06G129600 Manihot esculenta HOM05D005916 ORTHO05D007168 8.6e-72 274.2 207 71.0
CANSAT56G4429 Cannabis sativa HOM05D005916 ORTHO05D007168 1.1e-71 273.9 207 69.6
AL6G31440 Arabidopsis lyrata HOM05D005916 ORTHO05D007168 2.5e-71 272.7 205 71.2
arahy.Tifrunner.gnm1.ann1.7NV6YZ Arachis hypogaea HOM05D005916 ORTHO05D007168 3.3e-71 272.3 207 70.0
GSVIVG01024482001 Vitis vinifera HOM05D005916 ORTHO05D007168 3.3e-71 272.3 201 71.1
Haze_22228 Corylus avellana HOM05D005916 ORTHO05D007168 4.3e-71 271.9 218 67.0
Sp6g24470 Schrenkiella parvula HOM05D005916 ORTHO05D007168 5.6e-71 271.6 204 68.6
EL10Ac5g12406 Beta vulgaris HOM05D005916 ORTHO05D007168 7.3e-71 271.2 201 71.6
AT5G19910 Arabidopsis thaliana HOM05D005916 ORTHO05D007168 3.6e-70 268.9 205 68.8
MELO3C017626.2 Cucumis melo HOM05D005916 ORTHO05D007168 6.1e-70 268.1 200 69.5
PSO541G5205 Papaver somniferum HOM05D005916 ORTHO05D007168 4.0e-69 265.4 202 68.8
Prupe.2G269700 Prunus persica HOM05D005916 ORTHO05D007168 4.0e-69 265.4 201 70.1
Sc17g0004780 Simmondsia chinensis HOM05D005916 ORTHO05D007168 6.8e-69 264.6 207 69.1
Glyma.20G151600 Glycine max HOM05D005916 ORTHO05D007168 8.9e-69 264.2 209 67.9
Hund13383 Selenicereus undatus HOM05D005916 ORTHO05D007168 8.9e-69 264.2 200 71.0
BcaB08g36557 Brassica carinata HOM05D005916 ORTHO05D007168 2.6e-68 262.7 203 69.0
CARHR192950 Cardamine hirsuta HOM05D005916 ORTHO05D007168 2.6e-68 262.7 198 67.7
MD07G1241000 Malus domestica HOM05D005916 ORTHO05D007168 3.4e-68 262.3 205 67.3
EL10Ac9g22675 Beta vulgaris HOM05D005916 ORTHO05D007168 7.5e-68 261.2 201 69.7
ECA233G3320 Erigeron canadensis HOM05D005916 ORTHO05D007168 7.5e-68 261.2 204 69.6
THA.LOC104799659 Tarenaya hassleriana HOM05D005916 ORTHO05D007168 7.5e-68 261.2 212 67.9
BcaC04g19397 Brassica carinata HOM05D005916 ORTHO05D007168 8.3e-67 257.7 203 66.5
A02p05910 Brassica napus HOM05D005916 ORTHO05D007168 1.1e-66 257.3 192 70.3
BraA02t05543Z Brassica rapa HOM05D005916 ORTHO05D007168 1.1e-66 257.3 192 70.3
ClCG07G017200 Citrullus lanatus HOM05D005916 ORTHO05D007168 1.1e-66 257.3 201 67.7
PSO675G3127 Papaver somniferum HOM05D005916 ORTHO05D007168 1.1e-66 257.3 189 70.9
BolC2t06995H Brassica oleracea HOM05D005916 ORTHO05D007168 1.8e-66 256.5 206 67.5
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 1.8e-66 256.5 206 65.5
Sopen03g024920 Solanum pennellii HOM05D005916 ORTHO05D007168 1.8e-66 256.5 184 72.8
TWI39G0778 Tripterygium wilfordii HOM05D005916 ORTHO05D007168 1.8e-66 256.5 192 69.3
Medtr1g102540 Medicago truncatula HOM05D005916 ORTHO05D007168 2.4e-66 256.1 204 66.7
BNapus_Darmor_BZH_scaffold_38p01960 Brassica napus HOM05D005916 ORTHO05D007168 3.2e-66 255.8 204 67.6
Lsat_1_v5_gn_8_11541 Lactuca sativa HOM05D005916 ORTHO05D007168 3.2e-66 255.8 203 67.0
Nitab4.5_0000103g0220 Nicotiana tabacum HOM05D005916 ORTHO05D007168 3.2e-66 255.8 202 69.3
Sed0012421 Sechium edule HOM05D001364 ORTHO05D007168 9.2e-66 254.2 184 72.3
PGR083G1688 Punica granatum HOM05D005916 ORTHO05D007168 1.2e-65 253.8 183 71.0
PGSC0003DMG403008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 1.6e-65 253.4 184 71.2
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 2.0e-65 253.1 206 65.0
Solyc03g094030.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 2.0e-65 253.1 182 72.5
HPP92_020684 Vanilla planifolia HOM05D005916 ORTHO05D007168 2.7e-65 252.7 198 68.2
HanXRQChr08g0223361 Helianthus annuus HOM05D005916 ORTHO05D007168 7.8e-65 251.1 201 67.2
Nn6g33759 Nelumbo nucifera HOM05D005916 ORTHO05D007168 7.8e-65 251.1 211 63.5
HanXRQChr03g0069461 Helianthus annuus HOM05D005916 ORTHO05D007168 1.0e-64 250.8 201 67.2
Aa31LG2G19640 Aethionema arabicum HOM05D005916 ORTHO05D007168 5.0e-64 248.4 190 70.0
CDE06G1827 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 8.6e-64 247.7 204 64.2
MBI04_g13855_MAGBIO Magnolia biondii HOM05D005916 ORTHO05D007168 2.5e-63 246.1 183 71.6
QL02p099223 Quercus lobata HOM05D005916 ORTHO05D007168 5.6e-63 245.0 198 64.6
Lalb_Chr24g0402981 Lupinus albus HOM05D005916 ORTHO05D007168 1.2e-62 243.8 206 63.1
AUR62029119 Chenopodium quinoa HOM05D005916 ORTHO05D007168 2.1e-62 243.0 193 67.9
FvH4_5g39330 Fragaria vesca HOM05D005916 ORTHO05D007168 2.1e-62 243.0 142 82.4
FAN08G1750 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.1e-62 243.0 142 82.4
Zm00001eb038950 Zea mays HOM05D005916 ORTHO05D007168 8.0e-62 241.1 189 68.3
FAN18G1579 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.3e-61 239.6 142 81.7
Nitab4.5_0003429g0010 Nicotiana tabacum HOM05D005916 ORTHO05D007168 8.9e-61 237.7 202 65.8
ATR1098G017 Amborella trichopoda HOM05D005916 ORTHO05D007168 1.2e-60 237.3 184 67.9
Hma1.2p1_1014F.1_g247870 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 2.6e-60 236.1 207 66.2
TPR.G9644 Trifolium pratense HOM05D005916 ORTHO05D007168 4.4e-60 235.3 127 87.4
FAN25G1847 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.7e-59 233.4 141 79.4
CiPaw.07G182800 Carya illinoinensis HOM05D005916 ORTHO05D007168 2.2e-59 233.0 208 62.0
SalBow2G2523 Salvia bowleyana HOM05D005916 ORTHO05D007168 9.2e-58 227.6 155 76.8
Os07g0164600 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 2.7e-57 226.1 111 91.0
Atru.chr6.592 Acer truncatum HOM05D005916 ORTHO05D007168 3.5e-57 225.7 149 74.5
CAN.G297.9 Capsicum annuum HOM05D005916 ORTHO05D007168 6.0e-57 224.9 201 62.7
Lj8A49T46 Lonicera japonica HOM05D005916 ORTHO05D007168 1.7e-56 223.4 151 76.8
Os10g0564100 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 2.5e-55 219.5 191 62.3
CDE06G2153 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 3.6e-54 215.7 204 58.3
Mapoly0098s0031 Marchantia polymorpha HOM05D005916 ORTHO05D007168 3.6e-54 215.7 180 63.3
Pp3c26_180 Physcomitrium patens HOM05D005916 ORTHO05D007168 3.6e-54 215.7 129 77.5
Rhsim09G0188200 Rhododendron simsii HOM05D001364 ORTHO05D001316 6.8e-53 211.5 202 61.4
Dinv21889 Davidia involucrata HOM05D005916 ORTHO05D007168 2.9e-51 206.1 194 59.3
AagrBONN_evm.TU.Sc2ySwM_362.2892 Anthoceros agrestis HOM05D005916 ORTHO05D007168 4.6e-49 198.7 125 74.4
AUR62015003 Chenopodium quinoa HOM05D005916 ORTHO05D007168 2.3e-48 196.4 108 86.1
SEGI_39874 Sequoiadendron giganteum HOM05D005916 ORTHO05D007168 3.3e-47 192.6 95 91.6
Hma1.2p1_1014F.1_g247880 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 2.1e-46 189.9 91 95.6
CAN.G706.26 Capsicum annuum HOM05D005916 ORTHO05D007168 8.1e-46 188.0 158 65.2
unitig_90.g27553 Utricularia gibba HOM05D005916 ORTHO05D007168 2.6e-36 156.4 121 66.9
SMO197G0072 Selaginella moellendorffii HOM05D005916 ORTHO05D007168 1.1e-34 151.0 82 82.9
Actinidia31761 Actinidia chinensis HOM05D005916 ORTHO05D007168 1.9e-34 150.2 205 47.8
PRCOL_00001580 Prasinoderma coloniale HOM05D005916 ORTHO05D007168 1.8e-29 133.7 101 57.4
Peaxi162Scf00073g01818 Petunia axillaris HOM05D005916 ORTHO05D007168 1.3e-27 127.5 125 56.8
Dinv34527 Davidia involucrata HOM05D005916 ORTHO05D007168 1.6e-25 120.6 59 91.5
Actinidia01032 Actinidia chinensis HOM05D005916 ORTHO05D007168 6.7e-24 115.2 209 44.0
MCO04G185 Micromonas commoda HOM05D005916 ORTHO05D007168 9.6e-23 111.3 93 53.8
Pp3c13_24550 Physcomitrium patens HOM05D005916 ORTHO05D007168 1.8e-21 107.1 105 49.5
CBR_g3263 Chara braunii HOM05D000019 ORTHO05D000353 1.6e-17 94.0 83 56.6
FAN21G1143 Fragaria x ananassa HOM05D005916 ORTHO05D007168 6.7e-16 88.6 60 68.3
Cre12.g520850 Chlamydomonas reinhardtii HOM05D005916 ORTHO05D007168 1.1e-13 81.3 120 37.5
SalBow2G0368 Salvia bowleyana HOM05D005916 ORTHO05D007168 1.3e-11 74.3 38 86.8
Solyc03g094070.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 4.9e-11 72.4 91 45.1
FAN11G3144 Fragaria x ananassa HOM05D005916 ORTHO05D007168 3.9e-08 62.8 101 44.6
PGSC0003DMG401008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 7.4e-07 58.5 28 85.7
Cfa025999 Carpinus fangiana HOM05D005916 ORTHO05D007168 9.6e-07 58.2 83 43.4
Dinv07271 Davidia involucrata HOM05D005916 ORTHO05D007168 1.6e-06 57.4 34 73.5


User provided reference genes

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