Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold135G34947 Striga asiatica HOM05D003681 ORTHO05D004703 8.2e-188 660.2 330 100.0
SalBow1G2960 Salvia bowleyana HOM05D003681 ORTHO05D004703 5.5e-99 365.2 253 77.9
SalBow1G7977 Salvia bowleyana HOM05D003681 ORTHO05D004703 5.5e-99 365.2 253 77.9
SGA_v2.0_scaffold135G34941 Striga asiatica HOM05D003681 ORTHO05D004703 2.1e-98 363.2 253 78.3
MSTRG.3111 Avicennia marina HOM05D003681 ORTHO05D004703 1.3e-97 360.5 258 76.0
Nitab4.5_0000040g0490 Nicotiana tabacum HOM05D003681 ORTHO05D004703 8.7e-97 357.8 243 78.2
Nitab4.5_0008718g0020 Nicotiana tabacum HOM05D003681 ORTHO05D004703 8.7e-97 357.8 243 78.2
Migut.H00059 Erythranthe guttata HOM05D003681 ORTHO05D004703 2.5e-96 356.3 258 74.8
SGA_v2.0_scaffold18G08242 Striga asiatica HOM05D003681 ORTHO05D004703 7.4e-96 354.8 287 69.3
Lj7A605G77 Lonicera japonica HOM05D003681 ORTHO05D004703 1.3e-95 354.0 258 74.8
ClCG05G013220 Citrullus lanatus HOM05D003681 ORTHO05D004703 2.1e-95 353.2 258 73.6
CsaV3_3G027310 Cucumis sativus L. HOM05D003681 ORTHO05D004703 2.1e-95 353.2 258 73.6
Cfa007279 Carpinus fangiana HOM05D003681 ORTHO05D004703 2.8e-95 352.8 258 73.6
Dinv33384 Davidia involucrata HOM05D003681 ORTHO05D004703 2.8e-95 352.8 258 74.4
Oeu050433.3 Olea europaea HOM05D003681 ORTHO05D004703 3.7e-95 352.4 256 74.2
Cc07_g00400 Coffea canephora HOM05D003681 ORTHO05D004703 1.4e-94 350.5 258 73.3
COL.COLO4_29274 Corchorus olitorius HOM05D003681 ORTHO05D004703 1.4e-94 350.5 258 72.9
Thecc.04G027500 Theobroma cacao HOM05D003681 ORTHO05D004703 1.4e-94 350.5 258 72.9
Oeu058755.3 Olea europaea HOM05D003681 ORTHO05D004703 2.4e-94 349.7 256 73.4
Gorai.007G074100 Gossypium raimondii HOM05D003681 ORTHO05D004703 3.1e-94 349.4 258 72.5
Lsat_1_v5_gn_2_93641 Lactuca sativa HOM05D003681 ORTHO05D004703 4.0e-94 349.0 254 74.0
CSS0025950 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 5.3e-94 348.6 258 73.3
CiPaw.04G033000 Carya illinoinensis HOM05D003681 ORTHO05D004703 5.3e-94 348.6 258 72.9
Sed0015235 Sechium edule HOM05D003681 ORTHO05D004703 5.3e-94 348.6 258 72.9
Actinidia18423 Actinidia chinensis HOM05D003681 ORTHO05D004703 9.0e-94 347.8 258 73.3
Ciclev10014307m.g Citrus clementina HOM05D003681 ORTHO05D004703 9.0e-94 347.8 258 72.9
Gohir.D11G069300 Gossypium hirsutum HOM05D003681 ORTHO05D004703 9.0e-94 347.8 258 72.1
CiPaw.03G050400 Carya illinoinensis HOM05D003681 ORTHO05D004703 1.2e-93 347.4 258 72.5
Actinidia16950 Actinidia chinensis HOM05D003681 ORTHO05D004703 2.6e-93 346.3 258 72.9
Duzib187G0106 Durio zibethinus HOM05D003681 ORTHO05D004703 4.5e-93 345.5 258 72.1
Actinidia36165 Actinidia chinensis HOM05D003681 ORTHO05D004703 5.8e-93 345.1 260 71.2
Gohir.A11G065000 Gossypium hirsutum HOM05D003681 ORTHO05D004703 5.8e-93 345.1 258 71.7
Solyc02g067990.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 5.8e-93 345.1 258 72.5
Sopen02g017120 Solanum pennellii HOM05D003681 ORTHO05D004703 5.8e-93 345.1 258 72.5
PGSC0003DMG400006971 Solanum tuberosum HOM05D003681 ORTHO05D004703 5.8e-93 345.1 258 72.5
Gohir.A09G033400 Gossypium hirsutum HOM05D003681 ORTHO05D004703 7.6e-93 344.7 258 71.3
Lj2g0006828 Lotus japonicus HOM05D003681 ORTHO05D004703 1.3e-92 344.0 258 71.7
Nitab4.5_0001863g0130 Nicotiana tabacum HOM05D003681 ORTHO05D004703 1.3e-92 344.0 258 72.1
Peaxi162Scf00080g01724 Petunia axillaris HOM05D003681 ORTHO05D004703 1.3e-92 344.0 239 76.6
Sed0021158 Sechium edule HOM05D003681 ORTHO05D004703 1.3e-92 344.0 259 72.2
vmacro05923 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 1.3e-92 344.0 258 72.5
CANSAT64G2654 Cannabis sativa HOM05D003681 ORTHO05D004703 1.7e-92 343.6 258 71.7
MD09G1017400 Malus domestica HOM05D003681 ORTHO05D004703 1.7e-92 343.6 259 72.2
Sabra16G0218500 Salix brachista HOM05D003681 ORTHO05D004703 1.7e-92 343.6 259 72.6
CAN.G1057.25 Capsicum annuum HOM05D003681 ORTHO05D004703 2.9e-92 342.8 258 72.5
Glyma.05G073400 Glycine max HOM05D003681 ORTHO05D004703 2.9e-92 342.8 258 71.7
Glyma.19G077600 Glycine max HOM05D003681 ORTHO05D004703 2.9e-92 342.8 258 71.7
Gohir.D09G033600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 2.9e-92 342.8 258 71.3
Gorai.006G038600 Gossypium raimondii HOM05D003681 ORTHO05D004703 2.9e-92 342.8 258 71.3
Phvul.004G057300 Phaseolus vulgaris HOM05D003681 ORTHO05D004703 2.9e-92 342.8 258 71.7
Potri.001G337700 Populus trichocarpa HOM05D003681 ORTHO05D004703 2.9e-92 342.8 255 73.7
VMungo0464G1197 Vigna mungo HOM05D003681 ORTHO05D004703 2.9e-92 342.8 258 71.7
Dinv25694 Davidia involucrata HOM05D003681 ORTHO05D004703 3.8e-92 342.4 256 73.0
PGR142G3554 Punica granatum HOM05D003681 ORTHO05D004703 3.8e-92 342.4 258 71.3
RcHm_v2.0_Chr2g0174171 Rosa chinensis HOM05D003681 ORTHO05D004703 3.8e-92 342.4 258 72.1
Cpa.g.sc130.41 Carica papaya HOM05D003681 ORTHO05D004703 5.0e-92 342.0 258 70.5
Eucgr.I01693 Eucalyptus grandis HOM05D003681 ORTHO05D004703 5.0e-92 342.0 258 71.3
Peaxi162Scf00420g00351 Petunia axillaris HOM05D003681 ORTHO05D004703 5.0e-92 342.0 258 71.3
MD17G1018200 Malus domestica HOM05D003681 ORTHO05D004703 6.5e-92 341.7 258 72.1
Manes.17G107300 Manihot esculenta HOM05D003681 ORTHO05D004703 6.5e-92 341.7 258 71.3
arahy.Tifrunner.gnm1.ann1.0QF2GW Arachis hypogaea HOM05D003681 ORTHO05D004703 8.4e-92 341.3 258 70.9
Ca_04403_v3 Cicer arietinum L. HOM05D003681 ORTHO05D004703 8.4e-92 341.3 258 71.3
ECA238G4183 Erigeron canadensis HOM05D003681 ORTHO05D004703 8.4e-92 341.3 247 74.9
HanXRQChr07g0199161 Helianthus annuus HOM05D003681 ORTHO05D004703 8.4e-92 341.3 254 74.0
Manes.15G156300 Manihot esculenta HOM05D003681 ORTHO05D004703 8.4e-92 341.3 258 71.7
Prupe.3G299500 Prunus persica HOM05D003681 ORTHO05D004703 8.4e-92 341.3 258 71.7
Solyc02g093810.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 8.4e-92 341.3 258 71.7
Sopen02g038450 Solanum pennellii HOM05D003681 ORTHO05D004703 8.4e-92 341.3 258 71.7
Potri.001G337600 Populus trichocarpa HOM05D003681 ORTHO05D004703 1.1e-91 340.9 259 72.6
Atru.chr6.2486 Acer truncatum HOM05D003681 ORTHO05D004703 1.9e-91 340.1 258 71.7
PGSC0003DMG400020227 Solanum tuberosum HOM05D003681 ORTHO05D004703 3.2e-91 339.3 258 70.9
TPR.G36528 Trifolium pratense HOM05D003681 ORTHO05D004703 3.2e-91 339.3 258 70.2
CAN.G473.58 Capsicum annuum HOM05D003681 ORTHO05D004703 4.2e-91 339.0 258 71.3
Medtr6g022730 Medicago truncatula HOM05D003681 ORTHO05D004703 7.1e-91 338.2 258 70.2
vmacro18313 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 9.3e-91 337.8 258 70.5
GSVIVG01001851001 Vitis vinifera HOM05D003681 ORTHO05D004703 9.3e-91 337.8 259 71.4
QL02p072923 Quercus lobata HOM05D003681 ORTHO05D004703 1.2e-90 337.4 260 71.9
Aa31LG9G900 Aethionema arabicum HOM05D003681 ORTHO05D004703 1.6e-90 337.0 258 70.2
Rhsim10G0011100 Rhododendron simsii HOM05D003681 ORTHO05D004703 1.6e-90 337.0 281 67.6
TWI12G0555 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 1.6e-90 337.0 258 70.9
CSS0007013 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 2.1e-90 336.7 258 70.2
CSS0035050 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 2.1e-90 336.7 258 70.2
THA.LOC104805345 Tarenaya hassleriana HOM05D003681 ORTHO05D004703 2.1e-90 336.7 258 70.9
Gohir.D10G085200 Gossypium hirsutum HOM05D003681 ORTHO05D004703 2.7e-90 336.3 258 69.8
Thhalv10027657m.g Eutrema salsugineum HOM05D003681 ORTHO05D004703 3.5e-90 335.9 258 69.8
Gorai.011G093100 Gossypium raimondii HOM05D003681 ORTHO05D004703 3.5e-90 335.9 258 70.2
BcaB06g27549 Brassica carinata HOM05D003681 ORTHO05D004703 6.1e-90 335.1 258 69.8
BolC4t26356H Brassica oleracea HOM05D003681 ORTHO05D004703 6.1e-90 335.1 258 69.4
BraA04t17035Z Brassica rapa HOM05D003681 ORTHO05D004703 6.1e-90 335.1 258 69.8
Psat1g082400 Pisum sativum HOM05D003681 ORTHO05D004703 6.1e-90 335.1 258 69.0
Rhsim08G0046300 Rhododendron simsii HOM05D003681 ORTHO05D004703 6.1e-90 335.1 258 71.3
AL7G49000 Arabidopsis lyrata HOM05D003681 ORTHO05D004703 7.9e-90 334.7 258 69.8
AT5G40740 Arabidopsis thaliana HOM05D003681 ORTHO05D004703 7.9e-90 334.7 258 69.8
TWI36G0744 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 7.9e-90 334.7 258 69.4
Sp7g01150 Schrenkiella parvula HOM05D003681 ORTHO05D004703 1.3e-89 334.0 258 69.4
Carub.0007s3474 Capsella rubella HOM05D003681 ORTHO05D004703 2.3e-89 333.2 258 69.4
CARHR213770 Cardamine hirsuta HOM05D003681 ORTHO05D004703 2.3e-89 333.2 258 69.4
Gohir.A10G160600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 2.3e-89 333.2 258 69.8
BcaB02g07929 Brassica carinata HOM05D003681 ORTHO05D004703 3.0e-89 332.8 258 69.4
A07p20510 Brassica napus HOM05D003681 ORTHO05D004703 3.0e-89 332.8 258 69.4
BolC6t37131H Brassica oleracea HOM05D003681 ORTHO05D004703 3.0e-89 332.8 258 69.4
BraA07t29742Z Brassica rapa HOM05D003681 ORTHO05D004703 3.0e-89 332.8 258 69.4
C04p47540 Brassica napus HOM05D003681 ORTHO05D004703 3.9e-89 332.4 258 69.4
Hma1.2p1_0279F.1_g112260 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 3.9e-89 332.4 281 66.9
BcaC08g44481 Brassica carinata HOM05D003681 ORTHO05D004703 5.1e-89 332.0 258 69.4
C06p19360 Brassica napus HOM05D003681 ORTHO05D004703 5.1e-89 332.0 258 69.4
FvH4_6g52640 Fragaria vesca HOM05D003681 ORTHO05D004703 6.7e-89 331.6 258 70.9
FAN09G4630 Fragaria x ananassa HOM05D003681 ORTHO05D004703 6.7e-89 331.6 258 70.9
FAN14G5093 Fragaria x ananassa HOM05D003681 ORTHO05D004703 6.7e-89 331.6 258 70.9
Lalb_Chr02g0157941 Lupinus albus HOM05D003681 ORTHO05D004703 8.7e-89 331.3 258 69.0
A04p13760 Brassica napus HOM05D003681 ORTHO05D004703 1.9e-88 330.1 260 69.2
TAR374G1355 Trochodendron aralioides HOM05D003681 ORTHO05D004703 2.2e-87 326.6 259 69.5
TAR374G1530 Trochodendron aralioides HOM05D003681 ORTHO05D004703 2.2e-87 326.6 259 69.5
Lalb_Chr21g0317601 Lupinus albus HOM05D003681 ORTHO05D004703 2.8e-87 326.2 258 68.6
Aqoxy3G01435 Aquilegia oxysepala HOM05D003681 ORTHO05D004703 8.2e-87 324.7 259 68.7
Sabra16G0218400 Salix brachista HOM05D003681 ORTHO05D004703 1.1e-86 324.3 250 70.8
TAR371G0788 Trochodendron aralioides HOM05D003681 ORTHO05D004703 1.1e-86 324.3 259 68.7
Sc03g0006880 Simmondsia chinensis HOM05D003681 ORTHO05D004703 5.3e-86 322.0 270 65.2
FAN05G4404 Fragaria x ananassa HOM05D003681 ORTHO05D004703 9.0e-86 321.2 285 64.2
TAR622G1195 Trochodendron aralioides HOM05D003681 ORTHO05D004703 1.2e-85 320.9 259 68.3
FAN02G4174 Fragaria x ananassa HOM05D003681 ORTHO05D004703 1.5e-85 320.5 256 69.5
AUR62035509 Chenopodium quinoa HOM05D003681 ORTHO05D004703 2.6e-85 319.7 266 65.8
PSO017G2495 Papaver somniferum HOM05D003681 ORTHO05D004703 2.6e-85 319.7 269 66.5
PSO478G5006 Papaver somniferum HOM05D003681 ORTHO05D004703 2.6e-85 319.7 269 66.5
AUR62036017 Chenopodium quinoa HOM05D003681 ORTHO05D004703 4.5e-85 318.9 270 64.8
Hund06716 Selenicereus undatus HOM05D003681 ORTHO05D004703 1.7e-84 317.0 270 64.1
EL10Ac4g08610 Beta vulgaris HOM05D003681 ORTHO05D004703 5.5e-83 312.0 270 63.7
Haze_14813 Corylus avellana HOM05D003681 ORTHO05D004703 5.5e-83 312.0 269 65.1
Nn4g22444 Nelumbo nucifera HOM05D003681 ORTHO05D004703 1.6e-82 310.5 257 66.9
MBI11_g11079_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 2.5e-80 303.1 259 62.9
HPP92_006269 Vanilla planifolia HOM05D003681 ORTHO05D004703 4.8e-79 298.9 270 60.4
Os02g0329300 Oryza sativa ssp. japonica HOM05D003681 ORTHO05D004703 6.3e-79 298.5 260 63.8
SHI03860 Sapria himalayana HOM05D003681 ORTHO05D004703 1.1e-78 297.7 258 63.6
Zm00001eb235200 Zea mays HOM05D003681 ORTHO05D004703 9.1e-78 294.7 259 62.9
CDE07G0234 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 5.0e-76 288.9 286 55.2
Lj1g0019639 Lotus japonicus HOM05D003681 ORTHO05D004703 6.7e-73 278.5 263 60.8
ATR0824G011 Amborella trichopoda HOM05D003681 ORTHO05D004703 2.6e-72 276.6 259 60.6
QL07p006188 Quercus lobata HOM05D003681 ORTHO05D004703 1.3e-68 264.2 183 77.6
Sc03g0007020 Simmondsia chinensis HOM05D003681 ORTHO05D004703 1.2e-66 257.7 195 72.3
Mapoly0032s0042 Marchantia polymorpha HOM05D003681 ORTHO05D004703 1.6e-58 230.7 267 48.7
QL09p045970 Quercus lobata HOM05D003681 ORTHO05D004703 1.5e-56 224.2 156 76.3
CDE04G2610 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 4.4e-56 222.6 274 48.5
SMO367G0854 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 5.7e-56 222.2 257 49.8
Pp3c13_14720 Physcomitrium patens HOM05D003681 ORTHO05D004703 3.1e-54 216.5 226 53.5
Pp3c13_14730 Physcomitrium patens HOM05D003681 ORTHO05D004703 3.1e-54 216.5 226 53.5
Pp3c3_25790 Physcomitrium patens HOM05D003681 ORTHO05D004703 3.1e-54 216.5 226 53.1
unitig_21.g20482 Utricularia gibba HOM05D003681 ORTHO05D004703 4.1e-54 216.1 256 52.7
unitig_744.g24365 Utricularia gibba HOM05D003681 ORTHO05D004703 1.2e-53 214.5 260 50.8
Pp3c4_18170 Physcomitrium patens HOM05D003681 ORTHO05D004703 2.9e-52 209.9 260 48.1
Nn3g16565 Nelumbo nucifera HOM05D003681 ORTHO05D004703 6.3e-47 192.2 153 69.9
Actinidia35791 Actinidia chinensis HOM05D003681 ORTHO05D004703 1.1e-43 181.4 246 52.0
CBR_g66670 Chara braunii HOM05D003681 ORTHO05D004703 2.1e-42 177.2 241 45.2
DCAR_011289 Daucus carota HOM05D003681 ORTHO05D004703 2.3e-41 173.7 236 50.8
SMO367G0212 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 3.6e-34 149.8 118 67.8
SEGI_13919 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 3.6e-34 149.8 211 43.1
SMO367G0417 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 1.3e-31 141.4 124 62.1
RcHm_v2.0_Chr2g0166591 Rosa chinensis HOM05D003681 ORTHO05D004703 3.2e-30 136.7 76 92.1
SMO275G0043 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 3.7e-23 113.2 84 70.2
TAR629G3339 Trochodendron aralioides HOM05D003681 ORTHO05D030546 3.2e-22 110.2 97 60.8
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 1.8e-17 94.4 50 90.0
RcHm_v2.0_Chr2g0109021 Rosa chinensis HOM05D002608 ORTHO05D004703 3.4e-16 90.1 95 56.8
BcaC05g26953 Brassica carinata HOM05D003681 ORTHO05D024003 2.9e-15 87.0 60 63.3
C05p28020 Brassica napus HOM05D003681 ORTHO05D024003 4.9e-15 86.3 51 72.5
BolC5t31529H Brassica oleracea HOM05D003681 ORTHO05D024003 3.2e-14 83.6 50 72.0
AagrBONN_evm.TU.Sc2ySwM_228.437 Anthoceros agrestis HOM05D003681 ORTHO05D004703 9.2e-14 82.0 105 46.7
SMO275G0001 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 1.0e-12 78.6 84 54.8
MBI02_g11376_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D024003 1.7e-12 77.8 50 64.0
SMO367G0834 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 1.6e-10 71.2 84 51.2
RcHm_v2.0_Chr5g0047251 Rosa chinensis HOM05D002608 ORTHO05D021346 2.8e-10 70.5 65 52.3
SEGI_03694 Sequoiadendron giganteum HOM05D003681 ORTHO05D024003 1.5e-08 64.7 52 51.9
RcHm_v2.0_Chr6g0248711 Rosa chinensis HOM05D003681 ORTHO05D030546 2.9e-07 60.5 31 93.5


User provided reference genes

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