Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold135G34941 Striga asiatica HOM05D003681 ORTHO05D004703 0.0e+00 1412.5 745 100.0
SGA_v2.0_scaffold18G08242 Striga asiatica HOM05D003681 ORTHO05D004703 0.0e+00 1135.2 783 79.8
Migut.H00059 Erythranthe guttata HOM05D003681 ORTHO05D004703 4.4e-298 1027.7 770 74.8
SalBow1G2960 Salvia bowleyana HOM05D003681 ORTHO05D004703 2.3e-294 1015.4 734 76.6
SalBow1G7977 Salvia bowleyana HOM05D003681 ORTHO05D004703 2.3e-294 1015.4 734 76.6
MSTRG.3111 Avicennia marina HOM05D003681 ORTHO05D004703 7.8e-287 990.3 772 72.9
Cc07_g00400 Coffea canephora HOM05D003681 ORTHO05D004703 1.9e-269 932.6 769 68.8
Dinv33384 Davidia involucrata HOM05D003681 ORTHO05D004703 5.3e-267 924.5 783 67.7
Dinv25694 Davidia involucrata HOM05D003681 ORTHO05D004703 1.3e-265 919.8 784 67.7
Lj7A605G77 Lonicera japonica HOM05D003681 ORTHO05D004703 2.2e-265 919.1 748 70.5
Oeu050433.3 Olea europaea HOM05D003681 ORTHO05D004703 2.9e-265 918.7 765 67.7
CSS0025950 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 1.6e-263 912.9 776 66.6
Actinidia18423 Actinidia chinensis HOM05D003681 ORTHO05D004703 1.3e-262 909.8 775 66.5
PGSC0003DMG400006971 Solanum tuberosum HOM05D003681 ORTHO05D004703 2.4e-259 899.0 773 65.1
Actinidia16950 Actinidia chinensis HOM05D003681 ORTHO05D004703 5.3e-259 897.9 778 66.1
Thecc.04G027500 Theobroma cacao HOM05D003681 ORTHO05D004703 5.8e-258 894.4 772 65.3
Prupe.3G299500 Prunus persica HOM05D003681 ORTHO05D004703 1.0e-257 893.6 766 66.6
Atru.chr6.2486 Acer truncatum HOM05D003681 ORTHO05D004703 1.7e-257 892.9 773 65.2
Sopen02g017120 Solanum pennellii HOM05D003681 ORTHO05D004703 2.5e-256 889.0 775 64.5
CAN.G1057.25 Capsicum annuum HOM05D003681 ORTHO05D004703 4.6e-255 884.8 775 64.9
CiPaw.04G033000 Carya illinoinensis HOM05D003681 ORTHO05D004703 3.0e-254 882.1 784 64.0
QL02p072923 Quercus lobata HOM05D003681 ORTHO05D004703 8.7e-254 880.6 787 64.9
vmacro05923 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 8.7e-254 880.6 734 66.6
PGSC0003DMG400020227 Solanum tuberosum HOM05D003681 ORTHO05D004703 4.3e-253 878.2 771 65.2
Peaxi162Scf00420g00351 Petunia axillaris HOM05D003681 ORTHO05D004703 7.4e-253 877.5 742 66.7
CAN.G473.58 Capsicum annuum HOM05D003681 ORTHO05D004703 1.3e-252 876.7 775 64.9
Solyc02g093810.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 1.1e-251 873.6 771 64.7
GSVIVG01001851001 Vitis vinifera HOM05D003681 ORTHO05D004703 1.1e-251 873.6 784 63.5
Oeu058755.3 Olea europaea HOM05D003681 ORTHO05D004703 1.8e-251 872.8 797 62.9
CSS0035050 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 3.1e-251 872.1 772 64.1
Nitab4.5_0000040g0490 Nicotiana tabacum HOM05D003681 ORTHO05D004703 3.1e-251 872.1 772 64.1
Gohir.D09G033600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 4.1e-251 871.7 790 62.8
Solyc02g067990.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 4.1e-251 871.7 758 64.4
Sopen02g038450 Solanum pennellii HOM05D003681 ORTHO05D004703 4.1e-251 871.7 771 64.9
Gorai.006G038600 Gossypium raimondii HOM05D003681 ORTHO05D004703 5.3e-251 871.3 790 62.7
Duzib187G0106 Durio zibethinus HOM05D003681 ORTHO05D004703 2.6e-250 869.0 772 63.7
PGR142G3554 Punica granatum HOM05D003681 ORTHO05D004703 5.9e-250 867.8 783 63.3
Ciclev10014307m.g Citrus clementina HOM05D003681 ORTHO05D004703 7.6e-250 867.5 762 64.4
MD09G1017400 Malus domestica HOM05D003681 ORTHO05D004703 7.6e-250 867.5 773 64.4
Cpa.g.sc130.41 Carica papaya HOM05D003681 ORTHO05D004703 1.7e-249 866.3 783 62.7
CiPaw.03G050400 Carya illinoinensis HOM05D003681 ORTHO05D004703 2.2e-249 865.9 788 63.1
Potri.001G337600 Populus trichocarpa HOM05D003681 ORTHO05D004703 5.0e-249 864.8 772 64.6
CANSAT64G2654 Cannabis sativa HOM05D003681 ORTHO05D004703 1.1e-248 863.6 791 62.7
Manes.17G107300 Manihot esculenta HOM05D003681 ORTHO05D004703 1.4e-248 863.2 775 63.0
Eucgr.I01693 Eucalyptus grandis HOM05D003681 ORTHO05D004703 3.2e-248 862.1 783 63.3
Nitab4.5_0008718g0020 Nicotiana tabacum HOM05D003681 ORTHO05D004703 2.1e-247 859.4 745 65.1
Gohir.A11G065000 Gossypium hirsutum HOM05D003681 ORTHO05D004703 3.6e-247 858.6 772 62.8
TWI12G0555 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 7.9e-247 857.4 786 63.6
MD17G1018200 Malus domestica HOM05D003681 ORTHO05D004703 1.0e-246 857.1 772 64.5
TAR374G1530 Trochodendron aralioides HOM05D003681 ORTHO05D004703 1.0e-246 857.1 784 63.6
Manes.15G156300 Manihot esculenta HOM05D003681 ORTHO05D004703 3.9e-246 855.1 773 62.6
Gohir.A09G033400 Gossypium hirsutum HOM05D003681 ORTHO05D004703 8.7e-246 854.0 790 61.6
Potri.001G337700 Populus trichocarpa HOM05D003681 ORTHO05D004703 2.5e-245 852.4 772 63.7
Glyma.05G073400 Glycine max HOM05D003681 ORTHO05D004703 4.3e-245 851.7 773 64.0
Hma1.2p1_0279F.1_g112260 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 3.7e-244 848.6 796 62.9
Phvul.004G057300 Phaseolus vulgaris HOM05D003681 ORTHO05D004703 8.2e-244 847.4 776 63.4
Gorai.007G074100 Gossypium raimondii HOM05D003681 ORTHO05D004703 1.4e-243 846.7 772 63.1
Cfa007279 Carpinus fangiana HOM05D003681 ORTHO05D004703 1.8e-243 846.3 769 63.1
Glyma.19G077600 Glycine max HOM05D003681 ORTHO05D004703 1.8e-243 846.3 773 63.6
Gohir.D11G069300 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.8e-243 846.3 772 63.0
COL.COLO4_29274 Corchorus olitorius HOM05D003681 ORTHO05D004703 1.2e-242 843.6 751 64.3
CsaV3_3G027310 Cucumis sativus L. HOM05D003681 ORTHO05D004703 1.5e-242 843.2 774 63.3
VMungo0464G1197 Vigna mungo HOM05D003681 ORTHO05D004703 1.5e-242 843.2 771 63.4
TAR622G1195 Trochodendron aralioides HOM05D003681 ORTHO05D004703 2.9e-241 839.0 786 62.7
Lj2g0006828 Lotus japonicus HOM05D003681 ORTHO05D004703 5.0e-241 838.2 773 62.2
Nitab4.5_0001863g0130 Nicotiana tabacum HOM05D003681 ORTHO05D004703 5.0e-241 838.2 743 64.1
Rhsim10G0011100 Rhododendron simsii HOM05D003681 ORTHO05D004703 6.5e-241 837.8 742 64.2
Lalb_Chr02g0157941 Lupinus albus HOM05D003681 ORTHO05D004703 1.1e-240 837.0 769 62.2
Haze_14813 Corylus avellana HOM05D003681 ORTHO05D004703 1.4e-240 836.6 794 61.5
HanXRQChr07g0199161 Helianthus annuus HOM05D003681 ORTHO05D004703 1.4e-240 836.6 766 63.1
Gohir.D10G085200 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.9e-240 836.3 772 62.2
TWI36G0744 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 3.2e-240 835.5 786 61.8
Actinidia36165 Actinidia chinensis HOM05D003681 ORTHO05D004703 1.2e-239 833.6 758 63.9
Gorai.011G093100 Gossypium raimondii HOM05D003681 ORTHO05D004703 1.6e-239 833.2 772 62.2
ClCG05G013220 Citrullus lanatus HOM05D003681 ORTHO05D004703 3.6e-239 832.0 774 62.5
Peaxi162Scf00080g01724 Petunia axillaris HOM05D003681 ORTHO05D004703 4.6e-239 831.6 736 63.9
vmacro18313 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 2.3e-238 829.3 776 61.5
CSS0007013 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 6.7e-238 827.8 714 65.1
Thhalv10027657m.g Eutrema salsugineum HOM05D003681 ORTHO05D004703 2.0e-237 826.2 784 61.1
Aqoxy3G01435 Aquilegia oxysepala HOM05D003681 ORTHO05D004703 3.3e-237 825.5 782 61.5
Sed0015235 Sechium edule HOM05D003681 ORTHO05D004703 3.3e-237 825.5 782 62.0
Sc03g0006880 Simmondsia chinensis HOM05D003681 ORTHO05D004703 3.3e-237 825.5 777 61.1
arahy.Tifrunner.gnm1.ann1.0QF2GW Arachis hypogaea HOM05D003681 ORTHO05D004703 5.7e-237 824.7 773 62.6
Sp7g01150 Schrenkiella parvula HOM05D003681 ORTHO05D004703 6.3e-236 821.2 783 60.5
Carub.0007s3474 Capsella rubella HOM05D003681 ORTHO05D004703 1.4e-235 820.1 784 60.6
Hund06716 Selenicereus undatus HOM05D003681 ORTHO05D004703 3.1e-235 818.9 747 62.8
Sabra16G0218500 Salix brachista HOM05D003681 ORTHO05D004703 4.1e-235 818.5 775 62.2
Aa31LG9G900 Aethionema arabicum HOM05D003681 ORTHO05D004703 6.9e-235 817.8 786 60.2
Sed0021158 Sechium edule HOM05D003681 ORTHO05D004703 4.5e-234 815.1 773 61.7
BraA04t17035Z Brassica rapa HOM05D003681 ORTHO05D004703 5.9e-234 814.7 783 60.2
AL7G49000 Arabidopsis lyrata HOM05D003681 ORTHO05D004703 7.7e-234 814.3 783 60.5
BcaB02g07929 Brassica carinata HOM05D003681 ORTHO05D004703 7.7e-234 814.3 776 60.8
AT5G40740 Arabidopsis thaliana HOM05D003681 ORTHO05D004703 1.0e-233 813.9 783 60.4
C04p47540 Brassica napus HOM05D003681 ORTHO05D004703 1.7e-233 813.1 783 60.3
BraA07t29742Z Brassica rapa HOM05D003681 ORTHO05D004703 2.9e-233 812.4 782 60.1
A07p20510 Brassica napus HOM05D003681 ORTHO05D004703 3.8e-233 812.0 776 60.2
BolC6t37131H Brassica oleracea HOM05D003681 ORTHO05D004703 6.5e-233 811.2 782 60.1
Medtr6g022730 Medicago truncatula HOM05D003681 ORTHO05D004703 6.5e-233 811.2 773 62.2
Rhsim08G0046300 Rhododendron simsii HOM05D003681 ORTHO05D004703 6.5e-233 811.2 752 63.0
BcaB06g27549 Brassica carinata HOM05D003681 ORTHO05D004703 8.5e-233 810.8 767 61.4
ECA238G4183 Erigeron canadensis HOM05D003681 ORTHO05D004703 1.1e-232 810.4 743 62.6
PSO017G2495 Papaver somniferum HOM05D003681 ORTHO05D004703 2.5e-232 809.3 780 60.8
A04p13760 Brassica napus HOM05D003681 ORTHO05D004703 5.5e-232 808.1 785 60.0
RcHm_v2.0_Chr2g0174171 Rosa chinensis HOM05D003681 ORTHO05D004703 7.2e-232 807.7 784 61.5
TAR371G0788 Trochodendron aralioides HOM05D003681 ORTHO05D004703 9.4e-232 807.4 782 60.4
CARHR213770 Cardamine hirsuta HOM05D003681 ORTHO05D004703 1.2e-231 807.0 784 59.8
THA.LOC104805345 Tarenaya hassleriana HOM05D003681 ORTHO05D004703 2.1e-231 806.2 786 60.7
BcaC08g44481 Brassica carinata HOM05D003681 ORTHO05D004703 2.7e-231 805.8 776 60.1
C06p19360 Brassica napus HOM05D003681 ORTHO05D004703 6.1e-231 804.7 776 59.9
BolC4t26356H Brassica oleracea HOM05D003681 ORTHO05D004703 7.9e-231 804.3 783 60.0
EL10Ac4g08610 Beta vulgaris HOM05D003681 ORTHO05D004703 6.7e-230 801.2 749 61.4
Lalb_Chr21g0317601 Lupinus albus HOM05D003681 ORTHO05D004703 8.8e-230 800.8 769 60.6
PSO478G5006 Papaver somniferum HOM05D003681 ORTHO05D004703 2.0e-229 799.7 774 60.5
Psat1g082400 Pisum sativum HOM05D003681 ORTHO05D004703 4.4e-229 798.5 772 60.2
Nn4g22444 Nelumbo nucifera HOM05D003681 ORTHO05D004703 7.0e-227 791.2 787 60.2
FvH4_6g52640 Fragaria vesca HOM05D003681 ORTHO05D004703 1.2e-226 790.4 783 60.2
Sabra16G0218400 Salix brachista HOM05D003681 ORTHO05D004703 2.6e-226 789.3 758 61.3
FAN14G5093 Fragaria x ananassa HOM05D003681 ORTHO05D004703 6.5e-225 784.6 801 59.1
FAN09G4630 Fragaria x ananassa HOM05D003681 ORTHO05D004703 6.1e-223 778.1 801 58.7
FAN02G4174 Fragaria x ananassa HOM05D003681 ORTHO05D004703 1.8e-222 776.5 783 59.5
FAN05G4404 Fragaria x ananassa HOM05D003681 ORTHO05D004703 1.2e-221 773.9 828 57.0
AUR62036017 Chenopodium quinoa HOM05D003681 ORTHO05D004703 4.5e-218 761.9 759 59.3
MBI11_g11079_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 5.9e-218 761.5 789 57.3
Lsat_1_v5_gn_2_93641 Lactuca sativa HOM05D003681 ORTHO05D004703 1.1e-216 757.3 771 59.1
TPR.G36528 Trifolium pratense HOM05D003681 ORTHO05D004703 1.5e-213 746.9 808 57.4
Sc03g0007020 Simmondsia chinensis HOM05D003681 ORTHO05D004703 4.4e-213 745.3 770 57.4
AUR62035509 Chenopodium quinoa HOM05D003681 ORTHO05D004703 1.2e-210 737.3 723 59.3
Ca_04403_v3 Cicer arietinum L. HOM05D003681 ORTHO05D004703 2.3e-209 733.0 756 58.5
Lj1g0019639 Lotus japonicus HOM05D003681 ORTHO05D004703 3.4e-205 719.2 777 56.2
Os02g0329300 Oryza sativa ssp. japonica HOM05D003681 ORTHO05D004703 1.4e-203 713.8 772 56.2
unitig_21.g20482 Utricularia gibba HOM05D003681 ORTHO05D004703 1.6e-202 710.3 786 55.5
Gohir.A10G160600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 3.9e-193 679.1 563 67.7
Zm00001eb235200 Zea mays HOM05D003681 ORTHO05D004703 6.6e-193 678.3 737 55.1
CDE07G0234 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 2.1e-191 673.3 764 53.8
ATR0824G011 Amborella trichopoda HOM05D003681 ORTHO05D004703 2.5e-184 649.8 737 53.6
unitig_744.g24365 Utricularia gibba HOM05D003681 ORTHO05D004703 3.3e-184 649.4 665 58.8
HPP92_006269 Vanilla planifolia HOM05D003681 ORTHO05D004703 5.6e-184 648.7 770 51.9
TAR374G1355 Trochodendron aralioides HOM05D003681 ORTHO05D004703 4.1e-179 632.5 439 77.2
CDE04G2610 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 5.2e-166 589.0 744 50.0
DCAR_011289 Daucus carota HOM05D003681 ORTHO05D004703 6.4e-156 555.4 582 58.6
QL07p006188 Quercus lobata HOM05D003681 ORTHO05D004703 2.4e-142 510.4 368 75.3
Mapoly0032s0042 Marchantia polymorpha HOM05D003681 ORTHO05D004703 2.6e-125 453.8 737 41.7
SHI03860 Sapria himalayana HOM05D003681 ORTHO05D004703 1.9e-123 447.6 425 60.7
SMO367G0854 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 6.3e-119 432.6 614 45.0
QL09p045970 Quercus lobata HOM05D003681 ORTHO05D004703 1.1e-112 411.8 305 73.1
Pp3c13_14720 Physcomitrium patens HOM05D003681 ORTHO05D004703 1.8e-110 404.4 619 43.9
Pp3c13_14730 Physcomitrium patens HOM05D003681 ORTHO05D004703 1.8e-110 404.4 619 43.9
Pp3c4_18170 Physcomitrium patens HOM05D003681 ORTHO05D004703 7.0e-110 402.5 664 41.7
Pp3c3_25790 Physcomitrium patens HOM05D003681 ORTHO05D004703 5.9e-109 399.4 472 49.6
SGA_v2.0_scaffold135G34947 Striga asiatica HOM05D003681 ORTHO05D004703 4.7e-98 363.2 253 78.3
SEGI_13919 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 1.6e-90 338.2 364 55.2
CBR_g66670 Chara braunii HOM05D003681 ORTHO05D004703 2.5e-83 314.3 597 39.4
MELO3C014854.2 Cucumis melo HOM05D003681 ORTHO05D004703 3.3e-83 313.9 477 45.9
Actinidia35791 Actinidia chinensis HOM05D003681 ORTHO05D004703 2.1e-82 311.2 276 67.0
Nn3g16565 Nelumbo nucifera HOM05D003681 ORTHO05D004703 3.9e-76 290.4 195 77.4
RcHm_v2.0_Chr2g0109021 Rosa chinensis HOM05D002608 ORTHO05D004703 8.1e-66 256.1 291 54.0
AagrBONN_evm.TU.Sc2ySwM_228.437 Anthoceros agrestis HOM05D003681 ORTHO05D004703 8.6e-60 236.1 375 41.9
SMO367G0212 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 6.2e-58 229.9 565 34.9
MBI06_g35146_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 2.9e-55 221.1 393 44.0
TAR629G3339 Trochodendron aralioides HOM05D003681 ORTHO05D030546 9.6e-51 206.1 626 30.7
SMO367G0417 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 6.0e-45 186.8 595 32.1
Lsat_1_v5_gn_3_79520 Lactuca sativa HOM05D003681 ORTHO05D004703 3.0e-44 184.5 253 49.0
RcHm_v2.0_Chr5g0047251 Rosa chinensis HOM05D002608 ORTHO05D021346 3.3e-43 181.0 461 34.7
SMO275G0043 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 3.7e-34 151.0 126 64.3
RcHm_v2.0_Chr6g0248701 Rosa chinensis HOM05D002608 ORTHO05D013040 4.5e-32 144.1 124 62.1
DCAR_011288 Daucus carota HOM05D003681 ORTHO05D004703 7.6e-32 143.3 187 44.9
RcHm_v2.0_Chr2g0166591 Rosa chinensis HOM05D003681 ORTHO05D004703 3.2e-30 137.9 76 93.4
BcaC05g26953 Brassica carinata HOM05D003681 ORTHO05D024003 5.1e-28 130.6 67 89.6
C05p28020 Brassica napus HOM05D003681 ORTHO05D024003 5.1e-28 130.6 67 89.6
BolC5t31529H Brassica oleracea HOM05D003681 ORTHO05D024003 6.7e-28 130.2 72 84.7
RcHm_v2.0_Chr2g0096321 Rosa chinensis HOM05D003681 ORTHO05D004703 1.1e-27 129.4 87 71.3
RcHm_v2.0_Chr5g0045391 Rosa chinensis HOM05D003681 ORTHO05D004703 1.1e-27 129.4 87 71.3
vmacro18312 Vaccinium macrocarpon HOM05D004367 ORTHO05D004937 1.5e-19 102.4 153 39.9
RcHm_v2.0_Chr6g0248711 Rosa chinensis HOM05D003681 ORTHO05D030546 1.3e-18 99.4 49 95.9
Hma1.2p1_0026F.1_g016370 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 1.4e-17 95.9 234 36.8
MBI02_g11376_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D024003 1.8e-17 95.5 56 75.0
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 5.3e-17 94.0 50 90.0
SHI03859 Sapria himalayana HOM05D000105 ORTHO05D000023 1.2e-16 92.8 283 31.1
SEGI_03694 Sequoiadendron giganteum HOM05D003681 ORTHO05D024003 9.4e-14 83.2 55 67.3
SMO275G0001 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 2.3e-12 78.6 84 53.6
ECA247G3396 Erigeron canadensis HOM05D003681 ORTHO05D004703 5.1e-12 77.4 87 48.3
SMO367G0834 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 1.5e-11 75.9 85 51.8
SEGI_23209 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 4.1e-09 67.8 269 29.0
Hma1.2p1_0006F.1_g004670 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 5.3e-09 67.4 118 39.8


User provided reference genes

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