Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 2193.3 1107 100.0
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1810.0 1096 86.1
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 0.0e+00 1499.2 1018 74.4
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 0.0e+00 1435.6 1016 71.7
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 0.0e+00 1367.8 1036 66.2
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1358.6 1009 66.9
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 0.0e+00 1321.2 1020 65.1
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1308.9 1011 65.3
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 0.0e+00 1306.2 1015 65.1
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 0.0e+00 1305.4 1013 64.7
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 0.0e+00 1300.8 1006 65.2
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 0.0e+00 1286.2 1000 65.0
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 0.0e+00 1285.8 1016 64.0
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1281.5 922 68.8
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 0.0e+00 1277.7 1059 64.5
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 0.0e+00 1277.3 1011 63.9
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 0.0e+00 1268.4 1071 60.3
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 0.0e+00 1267.3 1021 61.8
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 0.0e+00 1263.1 1004 63.4
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 0.0e+00 1255.0 1017 62.9
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 0.0e+00 1254.2 992 64.5
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 0.0e+00 1253.4 1005 62.8
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 0.0e+00 1251.1 1001 63.5
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 0.0e+00 1249.2 1017 62.8
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 0.0e+00 1241.9 1008 62.3
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 0.0e+00 1238.8 992 63.3
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 0.0e+00 1236.9 1025 61.4
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1235.3 1005 61.5
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 0.0e+00 1231.9 1038 61.7
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 0.0e+00 1226.8 993 62.7
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 0.0e+00 1222.6 1008 61.9
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1219.5 1017 60.7
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 0.0e+00 1218.4 1007 62.3
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1217.6 1001 61.7
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 0.0e+00 1216.1 1005 62.1
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1215.3 1001 61.7
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 0.0e+00 1213.4 1010 61.5
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 0.0e+00 1208.7 1004 60.7
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 0.0e+00 1205.7 1046 59.1
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1200.7 1003 60.9
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 0.0e+00 1197.6 996 60.8
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1196.0 994 61.8
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 0.0e+00 1195.3 999 60.2
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 0.0e+00 1192.6 1018 58.9
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1192.2 1011 60.3
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 0.0e+00 1189.5 1060 58.7
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 0.0e+00 1187.6 1006 60.1
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1186.0 1002 61.1
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 0.0e+00 1179.9 984 62.6
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 0.0e+00 1176.0 1008 59.9
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 0.0e+00 1175.6 1010 60.3
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1173.3 1010 59.4
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1172.5 1008 59.8
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1172.5 998 59.9
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1171.8 1012 59.8
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1170.2 1008 59.6
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 0.0e+00 1169.8 998 59.6
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1169.8 996 60.1
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 0.0e+00 1169.5 1001 60.1
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1164.8 1007 59.3
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1162.1 1010 59.3
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 0.0e+00 1160.2 999 61.5
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1155.2 1008 59.3
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 0.0e+00 1153.7 1037 57.4
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 0.0e+00 1148.3 1012 57.6
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1144.8 1064 55.0
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1144.4 1012 58.2
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 0.0e+00 1143.6 1032 57.6
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1142.5 1034 55.9
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 0.0e+00 1139.0 1085 56.2
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1135.9 1029 57.3
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 0.0e+00 1131.3 999 58.5
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1129.4 1009 57.6
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1129.0 1009 57.6
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1114.8 1001 56.9
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1114.4 1005 57.1
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1114.4 1009 57.0
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 0.0e+00 1110.5 1026 57.4
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1110.1 1014 56.6
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1108.6 1072 54.7
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1106.7 1019 56.1
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1106.7 1019 56.1
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 0.0e+00 1101.7 1010 56.3
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 0.0e+00 1099.3 996 56.5
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 0.0e+00 1099.3 1066 55.1
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 0.0e+00 1097.8 795 68.3
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 0.0e+00 1097.4 850 64.5
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1087.8 1000 56.4
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 0.0e+00 1087.0 993 56.6
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 0.0e+00 1082.8 1004 55.3
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 0.0e+00 1078.9 992 56.2
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 0.0e+00 1078.5 835 64.0
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1078.2 1004 55.7
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 7.6e-312 1073.9 1053 53.9
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 1.1e-310 1070.1 900 61.9
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 2.6e-310 1068.9 1006 55.3
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 1.4e-308 1063.1 849 62.3
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 1.9e-305 1052.7 1003 54.6
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 6.1e-304 1047.7 1010 55.4
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 2.3e-303 1045.8 1007 54.2
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 5.2e-303 1044.6 1014 53.7
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 3.5e-299 1031.9 841 62.3
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 2.8e-296 1022.3 885 58.9
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 2.8e-296 1022.3 765 66.0
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 3.6e-288 995.3 803 63.4
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 2.6e-286 989.2 1011 51.9
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 1.1e-281 973.8 1016 52.0
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 1.2e-280 970.3 1070 48.8
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 6.4e-253 878.2 649 66.7
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 5.6e-249 865.1 982 48.6
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 3.1e-247 859.4 1016 46.9
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 2.1e-240 836.6 1033 45.6
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 3.8e-237 825.9 976 46.8
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 1.0e-226 791.2 691 57.7
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 6.1e-211 738.8 985 42.7
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 4.1e-199 699.5 712 52.1
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.1e-183 648.3 893 43.3
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 6.2e-179 632.5 647 51.8
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 1.1e-167 595.1 663 49.5
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 1.1e-146 525.4 398 67.3
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 7.1e-143 512.7 457 56.5
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 4.6e-126 456.8 524 48.5
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 2.2e-115 421.4 330 62.1
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 7.2e-103 379.8 330 58.2
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 1.0e-93 349.4 1241 25.6
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 2.8e-75 288.1 226 64.2
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 2.4e-74 285.0 423 43.0
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 6.2e-62 243.8 261 53.6
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 7.5e-60 236.9 253 53.0
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 6.4e-59 233.8 361 41.0
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.1e-53 216.5 207 56.5
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 8.9e-53 213.4 221 54.8
SEGI_28297 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 1.1e-45 189.9 266 43.6
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.3e-43 183.0 256 43.0
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.3e-43 183.0 256 43.0
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.3e-43 183.0 256 43.0
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 8.4e-43 180.3 256 42.6
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.1e-42 179.9 256 42.6
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 8.1e-38 163.7 339 33.3
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 4.0e-37 161.4 237 43.0
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 6.6e-32 144.1 313 36.1
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 1.6e-22 112.8 356 28.1
Actinidia36160 Actinidia chinensis HOM05D004846 ORTHO05D005630 1.1e-21 110.2 123 48.8
SEGI_31417 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 1.7e-19 102.8 96 56.2
Ca_26612_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.9e-18 99.4 241 28.2
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 6.7e-16 90.9 58 63.8
Ca_30652_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 8.7e-16 90.5 81 49.4
Hma1.2p1_0279F.1_g112210 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 4.8e-14 84.7 122 45.9
Cre08.g363950 Chlamydomonas reinhardtii HOM05D004846 ORTHO05D005630 6.2e-14 84.3 230 26.5
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 5.3e-13 81.3 65 61.5
C07p36330 Brassica napus HOM05D004846 ORTHO05D017504 2.6e-12 79.0 128 37.5
BolC7t44149H Brassica oleracea HOM05D004846 ORTHO05D017504 2.6e-12 79.0 128 37.5
BcaC06g33836 Brassica carinata HOM05D004846 ORTHO05D017504 1.7e-11 76.3 129 37.2


User provided reference genes

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