Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 4.4e-214 747.7 370 100.0
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 2.9e-157 558.9 368 73.4
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 9.0e-151 537.3 371 72.2
SalBow3G2114 Salvia bowleyana HOM05D005127 ORTHO05D006022 1.4e-135 486.9 335 70.7
SalBow3G1912 Salvia bowleyana HOM05D005127 ORTHO05D006022 1.8e-135 486.5 335 70.7
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 1.2e-134 483.8 381 64.8
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 2.0e-134 483.0 379 66.8
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 6.3e-128 461.5 368 63.9
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 3.4e-126 455.7 371 62.3
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 8.5e-125 451.1 372 60.8
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.1e-124 450.7 372 61.0
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 2.5e-124 449.5 371 60.4
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 3.2e-124 449.1 370 60.5
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 4.7e-123 445.3 370 60.0
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 6.7e-122 441.4 368 61.4
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 8.8e-122 441.0 368 60.9
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 1.1e-121 440.7 368 61.4
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 1.5e-121 440.3 379 61.2
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 2.0e-121 439.9 374 60.4
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 4.4e-121 438.7 374 59.6
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 2.2e-120 436.4 370 61.1
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 8.2e-120 434.5 375 59.7
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 1.1e-119 434.1 368 60.1
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 1.4e-119 433.7 368 60.9
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 2.4e-119 433.0 373 58.4
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 4.1e-119 432.2 368 59.8
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 7.0e-119 431.4 368 59.5
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 1.5e-118 430.3 369 59.6
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 3.5e-118 429.1 368 58.2
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 1.0e-117 427.6 377 59.4
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 1.7e-117 426.8 368 59.8
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 2.2e-117 426.4 368 59.2
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 8.5e-117 424.5 370 57.6
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 8.5e-117 424.5 368 59.2
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 1.5e-116 423.7 374 57.0
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 1.5e-116 423.7 373 57.4
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 3.2e-116 422.5 374 59.6
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 7.2e-116 421.4 371 57.4
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 9.4e-116 421.0 368 58.4
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 1.2e-115 420.6 368 58.2
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 8.0e-115 417.9 368 56.8
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 1.8e-114 416.8 373 56.6
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 2.3e-114 416.4 369 56.9
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 6.7e-114 414.8 369 56.9
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 8.8e-114 414.5 368 57.3
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 8.8e-114 414.5 373 55.8
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 2.6e-113 412.9 374 58.0
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 4.4e-113 412.1 372 58.1
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 9.7e-113 411.0 375 56.8
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 9.7e-113 411.0 370 57.3
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 2.2e-112 409.8 379 56.5
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 2.2e-112 409.8 369 57.7
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 2.8e-112 409.5 373 56.8
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 3.7e-112 409.1 370 56.5
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 6.3e-112 408.3 369 57.7
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 1.1e-111 407.5 369 55.8
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 2.4e-111 406.4 364 58.0
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.2e-110 404.1 378 55.6
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.0e-110 403.3 378 55.3
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 3.5e-110 402.5 372 55.4
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 4.5e-110 402.1 378 55.6
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 5.9e-110 401.7 368 55.2
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 2.2e-109 399.8 359 56.8
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 2.9e-109 399.4 365 56.2
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 5.0e-109 398.7 385 54.0
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 8.5e-109 397.9 372 56.2
Dinv19078 Davidia involucrata HOM05D005127 ORTHO05D006022 1.5e-108 397.1 368 57.1
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.5e-108 397.1 369 56.4
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 2.5e-108 396.4 370 56.8
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 3.2e-108 396.0 375 55.2
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 3.2e-108 396.0 370 56.8
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 4.2e-108 395.6 371 54.4
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 5.5e-108 395.2 370 56.5
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 7.2e-108 394.8 372 54.0
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 9.4e-108 394.4 372 57.0
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 1.6e-107 393.7 368 54.6
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.6e-107 393.7 370 56.5
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.6e-107 393.7 370 56.5
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 2.7e-107 392.9 369 56.6
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 2.7e-107 392.9 371 53.1
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 3.6e-107 392.5 372 54.0
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 4.7e-107 392.1 374 52.9
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 1.4e-106 390.6 372 56.5
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 5.2e-106 388.7 374 52.7
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 5.2e-106 388.7 375 53.1
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 1.2e-105 387.5 374 53.5
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 4.4e-105 385.6 374 52.9
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 5.7e-105 385.2 374 52.9
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 9.8e-105 384.4 375 52.3
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 9.8e-105 384.4 374 52.7
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 2.2e-104 383.3 368 56.8
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 3.7e-104 382.5 369 52.8
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 1.4e-103 380.6 371 51.5
DCAR_003746 Daucus carota HOM05D005127 ORTHO05D006022 1.4e-103 380.6 354 55.9
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 4.1e-103 379.0 375 52.0
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 9.1e-103 377.9 370 53.8
Lj4P252T15 Lonicera japonica HOM05D005127 ORTHO05D006022 1.6e-102 377.1 356 55.6
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 1.6e-102 377.1 373 52.5
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 3.5e-102 375.9 375 51.5
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.7e-101 373.6 375 51.5
Lsat_1_v5_gn_2_71721 Lactuca sativa HOM05D005127 ORTHO05D006022 1.5e-100 370.5 358 54.2
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 4.7e-91 339.0 371 49.9
Migut.H02247 Erythranthe guttata HOM05D005127 ORTHO05D006022 1.2e-89 334.3 346 52.9
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 5.7e-89 332.0 369 47.4
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 3.7e-88 329.3 460 41.7
Gohir.A11G169700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.0e-86 323.6 356 47.5
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 1.7e-85 320.5 371 46.1
Oeu045801.1 Olea europaea HOM05D005127 ORTHO05D006022 1.2e-83 314.3 347 49.3
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.4e-82 310.8 366 46.4
ECA238G3642 Erigeron canadensis HOM05D005127 ORTHO05D006022 1.2e-81 307.8 285 55.1
SHI30090 Sapria himalayana HOM05D005127 ORTHO05D006022 2.9e-80 303.1 372 45.2
unitig_699.g19573 Utricularia gibba HOM05D005127 ORTHO05D006022 3.2e-79 299.7 221 66.1
Zm00001eb022160 Zea mays HOM05D005127 ORTHO05D006022 2.3e-77 293.5 354 46.3
Mapoly0003s0310 Marchantia polymorpha HOM05D005127 ORTHO05D006022 3.9e-77 292.7 377 42.4
CDE01G0221 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 2.6e-73 280.0 270 50.0
CDE02G3442 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 3.0e-69 266.5 370 41.1
SMO141G0134 Selaginella moellendorffii HOM05D005127 ORTHO05D006022 8.9e-66 255.0 367 39.8
Pp3c8_14800 Physcomitrium patens HOM05D005127 ORTHO05D006022 1.2e-65 254.6 374 39.8
Solyc02g081230.4 Solanum lycopersicum HOM05D005127 ORTHO05D006022 1.6e-54 217.6 183 59.0
AUR62004769 Chenopodium quinoa HOM05D005127 ORTHO05D006022 2.7e-54 216.9 197 55.3
HPP92_020636 Vanilla planifolia HOM05D005127 ORTHO05D006022 3.1e-50 203.4 201 47.3
AagrBONN_evm.TU.Sc2ySwM_228.805 Anthoceros agrestis HOM05D005127 ORTHO05D006022 1.1e-44 184.9 251 41.8
PSO063G7663 Papaver somniferum HOM05D005127 ORTHO05D006022 9.6e-44 181.8 175 56.0
AagrBONN_evm.TU.Sc2ySwM_117.2318 Anthoceros agrestis HOM05D005127 ORTHO05D006022 7.6e-41 172.2 243 38.7
Lsat_1_v5_gn_2_6720 Lactuca sativa HOM05D005127 ORTHO05D006022 7.1e-39 165.6 161 50.9
Gorai.004G162300 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.9e-36 157.5 133 55.6
Gorai.009G350000 Gossypium raimondii HOM05D000154 ORTHO05D006022 5.6e-36 156.0 135 54.8
CBR_g39794 Chara braunii HOM05D005127 ORTHO05D006022 5.3e-34 149.4 291 30.6
Lsat_1_v5_gn_5_127001 Lactuca sativa HOM05D005127 ORTHO05D006022 3.4e-33 146.7 145 49.7
Gorai.005G117100 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.9e-32 143.7 137 51.8
Gorai.011G105200 Gossypium raimondii HOM05D000154 ORTHO05D006022 1.1e-23 115.2 93 54.8
Gohir.D05G325801 Gossypium hirsutum HOM05D000154 ORTHO05D006022 1.4e-23 114.8 95 53.7
Gohir.D08G156000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.5e-23 114.0 93 54.8
MCO15G483 Micromonas commoda HOM05D005127 ORTHO05D006022 4.2e-23 113.2 288 27.8
Gorai.002G056700 Gossypium raimondii HOM05D005127 ORTHO05D006022 4.6e-22 109.8 93 54.8
Gohir.D04G098033 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.1e-20 105.1 98 51.0
Medtr5g076940 Medicago truncatula HOM05D005127 ORTHO05D006022 3.3e-20 103.6 101 54.5
RcHm_v2.0_Chr5g0027411 Rosa chinensis HOM05D005127 ORTHO05D006022 3.3e-20 103.6 239 33.5
RcHm_v2.0_Chr5g0042551 Rosa chinensis HOM05D005127 ORTHO05D006022 3.7e-19 100.1 114 43.0
Gohir.D02G103100 Gossypium hirsutum HOM05D000154 ORTHO05D006022 4.6e-14 83.2 70 52.9
RcHm_v2.0_Chr4g0398381 Rosa chinensis HOM05D005127 ORTHO05D006022 3.0e-13 80.5 98 51.0
A09p28600 Brassica napus HOM05D005127 ORTHO05D006022 7.4e-12 75.9 58 63.8
Nn2g14442 Nelumbo nucifera HOM05D005127 ORTHO05D006022 1.7e-11 74.7 57 73.7
AL3G25840 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 2.0e-09 67.8 97 42.3
AL8G37650 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 2.0e-09 67.8 97 42.3
vmacro09980 Vaccinium macrocarpon HOM05D000060 ORTHO05D003150 5.0e-08 63.2 82 42.7
Dinv28241 Davidia involucrata HOM05D005127 ORTHO05D006022 1.1e-07 62.0 112 41.1
GSVIVG01000363001 Vitis vinifera HOM05D005127 ORTHO05D006022 7.2e-07 59.3 65 46.2
GSVIVG01034874001 Vitis vinifera HOM05D005127 ORTHO05D006022 9.4e-07 58.9 65 44.6
GSVIVG01038053001 Vitis vinifera HOM05D005127 ORTHO05D006022 2.7e-06 57.4 59 47.5


User provided reference genes

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