Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold135G34926 Striga asiatica HOM05D006554 ORTHO05D008778 1.4e-193 679.5 362 100.0
MSTRG.3126 Avicennia marina HOM05D006554 ORTHO05D008778 3.4e-78 296.2 318 55.0
Migut.H00036 Erythranthe guttata HOM05D006554 ORTHO05D008778 2.3e-66 256.9 355 44.5
SalBow1G4569 Salvia bowleyana HOM05D006554 ORTHO05D008778 8.5e-61 238.4 288 47.2
Dinv33413 Davidia involucrata HOM05D006554 ORTHO05D008778 5.9e-54 215.7 367 41.7
vmacro05891 Vaccinium macrocarpon HOM05D006554 ORTHO05D008778 1.6e-51 207.6 308 43.2
Oeu050455.2 Olea europaea HOM05D006554 ORTHO05D008778 3.6e-51 206.5 354 40.7
Lalb_Chr22g0360641 Lupinus albus HOM05D006554 ORTHO05D008778 8.8e-50 201.8 279 44.4
Cc07_g00120 Coffea canephora HOM05D006554 ORTHO05D008778 8.2e-48 195.3 289 41.9
Phvul.008G147100 Phaseolus vulgaris HOM05D006554 ORTHO05D008778 5.3e-47 192.6 287 42.5
Peaxi162Scf00080g01410 Petunia axillaris HOM05D006554 ORTHO05D008778 9.1e-47 191.8 330 38.8
Solyc02g067900.3 Solanum lycopersicum HOM05D006554 ORTHO05D008778 3.4e-46 189.9 327 39.4
Haze_14775 Corylus avellana HOM05D006554 ORTHO05D008778 5.9e-46 189.1 311 41.2
Nn4g22538 Nelumbo nucifera HOM05D006554 ORTHO05D008778 7.7e-46 188.7 307 38.4
Sopen02g017020 Solanum pennellii HOM05D006554 ORTHO05D008778 1.3e-45 188.0 332 39.2
QL02p073734 Quercus lobata HOM05D006554 ORTHO05D008778 1.7e-45 187.6 291 42.3
Glyma.19G079100 Glycine max HOM05D006554 ORTHO05D008778 2.2e-45 187.2 295 42.7
Cfa007322 Carpinus fangiana HOM05D006554 ORTHO05D008778 3.8e-45 186.4 307 41.0
GSVIVG01032362001 Vitis vinifera HOM05D006554 ORTHO05D008778 5.0e-45 186.0 372 36.0
RhsimUnG0087800 Rhododendron simsii HOM05D006554 ORTHO05D008778 1.1e-44 184.9 297 42.1
TPR.G1120 Trifolium pratense HOM05D006554 ORTHO05D008778 1.1e-44 184.9 306 42.2
Glyma.16G067800 Glycine max HOM05D006554 ORTHO05D008778 2.5e-44 183.7 296 41.6
Nitab4.5_0004496g0080 Nicotiana tabacum HOM05D006554 ORTHO05D008778 3.2e-44 183.3 335 38.5
Nitab4.5_0000040g0640 Nicotiana tabacum HOM05D006554 ORTHO05D008778 4.2e-44 183.0 335 38.2
PGSC0003DMG400006964 Solanum tuberosum HOM05D006554 ORTHO05D008778 4.2e-44 183.0 328 36.0
TAR629G0722 Trochodendron aralioides HOM05D006554 ORTHO05D008778 1.6e-43 181.0 387 33.9
CiPaw.04G030700 Carya illinoinensis HOM05D006554 ORTHO05D008778 6.1e-43 179.1 285 42.1
Hma1.2p1_0279F.1_g111960 Hydrangea macrophylla HOM05D006554 ORTHO05D008778 8.0e-43 178.7 223 47.5
Prupe.3G295900 Prunus persica HOM05D006554 ORTHO05D008778 1.0e-42 178.3 326 37.1
Medtr7g032890 Medicago truncatula HOM05D006554 ORTHO05D008778 3.9e-42 176.4 303 39.6
FAN14G0519 Fragaria x ananassa HOM05D006554 ORTHO05D008778 3.3e-41 173.3 293 39.2
Actinidia05967 Actinidia chinensis HOM05D006554 ORTHO05D008778 5.7e-41 172.6 324 38.6
Duzib147G0564 Durio zibethinus HOM05D006554 ORTHO05D008778 5.7e-41 172.6 297 39.7
Gohir.D04G059400 Gossypium hirsutum HOM05D006554 ORTHO05D008778 7.4e-41 172.2 295 40.0
Gorai.012G066100 Gossypium raimondii HOM05D006554 ORTHO05D008778 9.7e-41 171.8 295 40.0
Gohir.A05G353700 Gossypium hirsutum HOM05D006554 ORTHO05D008778 6.3e-40 169.1 293 39.6
MD09G1020300 Malus domestica HOM05D006554 ORTHO05D008778 8.2e-40 168.7 326 37.1
AUR62028440 Chenopodium quinoa HOM05D006554 ORTHO05D008778 1.8e-39 167.5 304 36.2
FAN05G3817 Fragaria x ananassa HOM05D006554 ORTHO05D008778 7.0e-39 165.6 292 39.0
arahy.Tifrunner.gnm1.ann1.1L0SFZ Arachis hypogaea HOM05D006554 ORTHO05D008778 1.2e-38 164.9 319 37.0
Potri.003G101100 Populus trichocarpa HOM05D006554 ORTHO05D008778 1.2e-38 164.9 277 38.3
FvH4_6g52060 Fragaria vesca HOM05D006554 ORTHO05D008778 1.6e-38 164.5 283 37.5
Lj1g0005465 Lotus japonicus HOM05D006554 ORTHO05D008778 2.6e-38 163.7 281 40.9
Ah.03g136830 Amaranthus hybridus HOM05D003292 ORTHO05D004237 3.5e-38 163.3 306 35.9
RcHm_v2.0_Chr2g0173581 Rosa chinensis HOM05D006554 ORTHO05D008778 3.5e-38 163.3 307 37.1
RhsimUnG0005800 Rhododendron simsii HOM05D006554 ORTHO05D008778 1.3e-37 161.4 286 40.9
Ciclev10015858m.g Citrus clementina HOM05D006554 ORTHO05D008778 2.9e-37 160.2 344 34.0
Manes.15G153200 Manihot esculenta HOM05D006554 ORTHO05D008778 1.2e-35 154.8 338 32.5
ClCG05G012880 Citrullus lanatus HOM05D006554 ORTHO05D008778 1.6e-35 154.5 297 33.7
FAN14G5462 Fragaria x ananassa HOM05D006554 ORTHO05D008778 2.7e-35 153.7 340 33.2
EL10Ac5g11640 Beta vulgaris HOM05D006554 ORTHO05D008778 1.8e-34 151.0 307 34.5
FAN09G2431 Fragaria x ananassa HOM05D006554 ORTHO05D008778 4.0e-34 149.8 272 36.8
CsaV3_3G027590 Cucumis sativus L. HOM05D006554 ORTHO05D008778 8.8e-34 148.7 297 33.0
Prupe.3G207500 Prunus persica HOM05D006554 ORTHO05D008778 4.4e-33 146.4 313 35.5
MELO3C014791.2 Cucumis melo HOM05D006554 ORTHO05D008778 5.7e-33 146.0 297 32.7
Sed0003688 Sechium edule HOM05D006554 ORTHO05D008778 7.5e-33 145.6 299 32.8
unitig_52.g17657 Utricularia gibba HOM05D006554 ORTHO05D008778 1.1e-31 141.7 262 40.1
FAN02G3632 Fragaria x ananassa HOM05D006554 ORTHO05D008778 4.1e-31 139.8 264 37.1
Lsat_1_v5_gn_0_6020 Lactuca sativa HOM05D006554 ORTHO05D008778 4.1e-31 139.8 345 33.0
Sabra03G0068900 Salix brachista HOM05D006554 ORTHO05D008778 4.1e-31 139.8 308 33.4
Hund23035 Selenicereus undatus HOM05D006554 ORTHO05D008778 4.5e-30 136.3 272 35.7
CANSAT64G1839 Cannabis sativa HOM05D006554 ORTHO05D008778 1.7e-29 134.4 324 33.0
ECA246G2886 Erigeron canadensis HOM05D006554 ORTHO05D008778 4.2e-28 129.8 307 32.6
CSS0050446 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 5.5e-28 129.4 149 51.0
AT5G40600 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 1.6e-27 127.9 276 33.7
PGR083G2647 Punica granatum HOM05D006554 ORTHO05D008778 2.1e-27 127.5 289 32.5
AL7G49210 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 2.7e-27 127.1 276 33.0
Sp7g01270 Schrenkiella parvula HOM05D006554 ORTHO05D008778 2.7e-27 127.1 279 31.9
C04p47410 Brassica napus HOM05D004424 ORTHO05D005476 3.6e-27 126.7 279 33.3
A04p13620 Brassica napus HOM05D004424 ORTHO05D005476 8.0e-27 125.6 273 34.1
BraA04t17023Z Brassica rapa HOM05D004424 ORTHO05D005476 8.0e-27 125.6 273 34.1
AL5G16780 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 1.0e-26 125.2 285 33.0
BolC4t26342H Brassica oleracea HOM05D006554 ORTHO05D008778 1.0e-26 125.2 279 33.3
Carub.0007s3489 Capsella rubella HOM05D006554 ORTHO05D008778 1.5e-25 121.3 269 30.9
AT3G27420 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 6.3e-24 115.9 267 33.3
CARHR261360 Cardamine hirsuta HOM05D006554 ORTHO05D008778 6.3e-24 115.9 277 31.4
Eucgr.J02264 Eucalyptus grandis HOM05D006554 ORTHO05D008778 1.4e-23 114.8 364 27.5
Sp2g16620 Schrenkiella parvula HOM05D006554 ORTHO05D008778 3.1e-23 113.6 279 33.0
Aqoxy5G03668 Aquilegia oxysepala HOM05D006554 ORTHO05D008778 7.0e-23 112.5 134 48.5
Thecc.04G022100 Theobroma cacao HOM05D006554 ORTHO05D008778 1.2e-22 111.7 180 38.9
Atru.chr6.2450 Acer truncatum HOM05D006554 ORTHO05D008778 2.0e-22 110.9 156 44.2
PSO675G3751 Papaver somniferum HOM05D006554 ORTHO05D008778 1.3e-21 108.2 278 31.3
BolC4t27196H Brassica oleracea HOM05D006554 ORTHO05D008778 2.3e-21 107.5 200 37.5
Thhalv10004828m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 2.3e-21 107.5 281 30.6
Psat7g108920 Pisum sativum HOM05D006554 ORTHO05D008778 2.3e-21 107.5 224 35.7
Thhalv10027933m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 2.9e-21 107.1 284 31.3
Carub.0005s0577 Capsella rubella HOM05D006554 ORTHO05D008778 3.8e-21 106.7 243 31.7
CARHR148770 Cardamine hirsuta HOM05D006554 ORTHO05D008778 5.0e-21 106.3 276 31.5
PSO541G1758 Papaver somniferum HOM05D006554 ORTHO05D008778 1.1e-20 105.1 146 40.4
HPP92_003738 Vanilla planifolia HOM05D006554 ORTHO05D008778 3.3e-20 103.6 224 35.3
ATR0199G021 Amborella trichopoda HOM05D006554 ORTHO05D008778 4.2e-20 103.2 294 30.3
BolC2t11482H Brassica oleracea HOM05D006554 ORTHO05D008778 2.8e-19 100.5 204 33.3
BcaB06g27536 Brassica carinata HOM05D006554 ORTHO05D008778 1.8e-18 97.8 123 43.1
VMungo1383G1633 Vigna mungo HOM05D006554 ORTHO05D008778 4.0e-18 96.7 97 56.7
Ca_06565_v3 Cicer arietinum L. HOM05D006554 ORTHO05D008778 5.2e-18 96.3 157 43.3
BcaC03g17463 Brassica carinata HOM05D006554 ORTHO05D017433 1.2e-17 95.1 277 30.3
Aa31LG9G1020 Aethionema arabicum HOM05D006554 ORTHO05D008778 1.5e-17 94.7 286 29.0
C02p54190 Brassica napus HOM05D006554 ORTHO05D008778 3.4e-17 93.6 277 30.3
A02p35470 Brassica napus HOM05D006554 ORTHO05D017433 5.7e-17 92.8 277 31.0
BraA02t08548Z Brassica rapa HOM05D006554 ORTHO05D017433 7.5e-17 92.4 325 28.0
Atru.chr6.2449 Acer truncatum HOM05D006554 ORTHO05D008778 1.3e-16 91.7 104 46.2
CSS0049853 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 2.2e-16 90.9 70 61.4
VMungo1383G3169 Vigna mungo HOM05D006554 ORTHO05D008778 2.2e-16 90.9 148 39.2
DCAR_002966 Daucus carota HOM05D006554 ORTHO05D008778 6.3e-16 89.4 205 30.7
Lj7A603G61 Lonicera japonica HOM05D006554 ORTHO05D008778 1.8e-15 87.8 180 36.1
BcaB07g30158 Brassica carinata HOM05D006554 ORTHO05D008778 7.8e-14 82.4 125 36.8
SHI53794 Sapria himalayana HOM05D006554 ORTHO05D008778 7.8e-14 82.4 186 33.9
COL.COLO4_29198 Corchorus olitorius HOM05D006554 ORTHO05D008778 8.6e-13 79.0 195 31.3
Gorai.011G128000 Gossypium raimondii HOM05D006554 ORTHO05D008778 2.8e-11 73.9 121 40.5
CDE02G2727 Ceratophyllum demersum HOM05D003393 ORTHO05D003916 3.6e-11 73.6 124 33.9
Gohir.D10G116100 Gossypium hirsutum HOM05D006554 ORTHO05D008778 6.1e-11 72.8 116 41.4
Sc03g0007220 Simmondsia chinensis HOM05D006554 ORTHO05D008778 1.4e-10 71.6 133 40.6
CDE09G0234 Ceratophyllum demersum HOM05D006554 ORTHO05D008778 2.3e-10 70.9 123 34.1
FAN09G3965 Fragaria x ananassa HOM05D000664 ORTHO05D000491 2.3e-10 70.9 159 32.7
PSO210G7616 Papaver somniferum HOM05D006554 ORTHO05D008778 2.3e-10 70.9 101 41.6
CBR_g49972 Chara braunii HOM05D000336 ORTHO05D002705 1.2e-09 68.6 114 38.6
Gorai.001G185000 Gossypium raimondii HOM05D004314 ORTHO05D018179 1.5e-09 68.2 111 39.6
Mapoly0010s0030 Marchantia polymorpha HOM05D000336 ORTHO05D002705 1.5e-09 68.2 84 45.2
SEGI_16878 Sequoiadendron giganteum HOM05D000336 ORTHO05D002705 1.5e-09 68.2 83 47.0
Cpa.g.sc130.62 Carica papaya HOM05D006554 ORTHO05D008778 5.8e-09 66.2 129 39.5
Pp3c22_7000 Physcomitrium patens HOM05D000336 ORTHO05D002705 9.8e-09 65.5 116 38.8
CDE09G1186 Ceratophyllum demersum HOM05D006554 ORTHO05D008778 1.3e-08 65.1 147 33.3
TAR633G1495 Trochodendron aralioides HOM05D000336 ORTHO05D002705 2.2e-08 64.3 84 40.5
MSTRG.4151 Avicennia marina HOM05D000336 ORTHO05D002705 3.7e-08 63.5 93 38.7
Lj2g0014987 Lotus japonicus HOM05D000336 ORTHO05D002705 1.4e-07 61.6 94 38.3
MBI02_g34318_MAGBIO Magnolia biondii HOM05D000336 ORTHO05D002705 2.4e-07 60.8 112 35.7
CANSAT54G2317 Cannabis sativa HOM05D000336 ORTHO05D002705 3.2e-07 60.5 84 36.9
Cpa.g.sc130.63 Carica papaya HOM05D006554 ORTHO05D008778 4.1e-07 60.1 123 34.1
CANSAT54G1049 Cannabis sativa HOM05D000336 ORTHO05D002705 5.4e-07 59.7 84 36.9
Pp3c18_15420 Physcomitrium patens HOM05D000336 ORTHO05D002705 5.4e-07 59.7 107 40.2
SEGI_39566 Sequoiadendron giganteum HOM05D000336 ORTHO05D002705 5.4e-07 59.7 99 37.4
Phvul.004G074600 Phaseolus vulgaris HOM05D000336 ORTHO05D002705 7.0e-07 59.3 84 36.9
unitig_748.g8305 Utricularia gibba HOM05D000336 ORTHO05D002705 7.0e-07 59.3 129 33.3
Pp3c19_8020 Physcomitrium patens HOM05D000336 ORTHO05D002705 9.2e-07 58.9 80 41.2
Pp3c21_9250 Physcomitrium patens HOM05D000336 ORTHO05D002705 1.2e-06 58.5 107 38.3
Thecc.10G069700 Theobroma cacao HOM05D000336 ORTHO05D002705 1.2e-06 58.5 112 34.8
unitig_32.g10850 Utricularia gibba HOM05D000336 ORTHO05D002705 1.2e-06 58.5 132 34.1
Actinidia03035 Actinidia chinensis HOM05D000336 ORTHO05D002705 1.6e-06 58.2 84 38.1
Carub.0005s1864 Capsella rubella HOM05D000336 ORTHO05D002705 1.6e-06 58.2 103 34.0
Sabra10G0169200 Salix brachista HOM05D000336 ORTHO05D002705 1.6e-06 58.2 114 30.7
Duzib106G1105 Durio zibethinus HOM05D000336 ORTHO05D002705 2.0e-06 57.8 112 33.0
PGR044G0317 Punica granatum HOM05D000336 ORTHO05D002705 2.0e-06 57.8 121 30.6
Zm00001eb204370 Zea mays HOM05D000336 ORTHO05D000593 2.0e-06 57.8 68 44.1
Zm00001eb238340 Zea mays HOM05D000336 ORTHO05D000593 2.0e-06 57.8 68 44.1
Ca_18895_v3 Cicer arietinum L. HOM05D000336 ORTHO05D000593 2.7e-06 57.4 70 40.0
DCAR_024281 Daucus carota HOM05D000336 ORTHO05D002705 2.7e-06 57.4 120 28.3
Eucgr.L02321 Eucalyptus grandis HOM05D006554 ORTHO05D008778 2.7e-06 57.4 64 48.4
Lj3g0002391 Lotus japonicus HOM05D000336 ORTHO05D000593 2.7e-06 57.4 70 40.0
Potri.008G043000 Populus trichocarpa HOM05D000336 ORTHO05D002705 2.7e-06 57.4 84 35.7
Sabra11G0092500 Salix brachista HOM05D000336 ORTHO05D000593 2.7e-06 57.4 75 41.3
SalBow3G1252 Salvia bowleyana HOM05D000336 ORTHO05D002705 2.7e-06 57.4 83 37.3
Zm00001eb119980 Zea mays HOM05D000336 ORTHO05D000593 2.7e-06 57.4 70 41.4
Zm00001eb270110 Zea mays HOM05D000336 ORTHO05D002705 2.7e-06 57.4 133 30.8
Mapoly0042s0064 Marchantia polymorpha HOM05D000336 ORTHO05D000593 3.5e-06 57.0 64 43.8
Medtr2g091130 Medicago truncatula HOM05D000336 ORTHO05D000593 3.5e-06 57.0 70 41.4
TPR.G30388 Trifolium pratense HOM05D000336 ORTHO05D000593 3.5e-06 57.0 70 40.0
Aqoxy4G03225 Aquilegia oxysepala HOM05D000336 ORTHO05D002705 4.6e-06 56.6 84 35.7
Eucgr.C03321 Eucalyptus grandis HOM05D006554 ORTHO05D008778 4.6e-06 56.6 65 49.2
Medtr2g091135 Medicago truncatula HOM05D000336 ORTHO05D000593 4.6e-06 56.6 70 41.4
Nitab4.5_0005460g0050 Nicotiana tabacum HOM05D000336 ORTHO05D002705 4.6e-06 56.6 84 35.7
Potri.001G376400 Populus trichocarpa HOM05D000336 ORTHO05D000593 4.6e-06 56.6 68 44.1
CDE02G1362 Ceratophyllum demersum HOM05D000336 ORTHO05D002705 6.0e-06 56.2 86 38.4
ClCG09G020540 Citrullus lanatus HOM05D000336 ORTHO05D002705 6.0e-06 56.2 114 29.8
Migut.F01763 Erythranthe guttata HOM05D000336 ORTHO05D002705 6.0e-06 56.2 84 33.3
Gohir.A05G345700 Gossypium hirsutum HOM05D000336 ORTHO05D002705 6.0e-06 56.2 112 33.9
Gohir.D04G084800 Gossypium hirsutum HOM05D000336 ORTHO05D002705 6.0e-06 56.2 112 33.9
Gorai.012G094500 Gossypium raimondii HOM05D000336 ORTHO05D002705 6.0e-06 56.2 112 33.9
Os02g0250300 Oryza sativa ssp. japonica HOM05D000336 ORTHO05D000593 6.0e-06 56.2 116 33.6
Prupe.2G216800 Prunus persica HOM05D000336 ORTHO05D002705 6.0e-06 56.2 84 34.5
QL08p056651 Quercus lobata HOM05D000336 ORTHO05D002705 6.0e-06 56.2 84 34.5
Hund00980 Selenicereus undatus HOM05D000336 ORTHO05D000593 6.0e-06 56.2 68 44.1
TWI60G1326 Tripterygium wilfordii HOM05D000336 ORTHO05D002705 6.0e-06 56.2 86 31.4
HPP92_002843 Vanilla planifolia HOM05D000336 ORTHO05D000593 6.0e-06 56.2 70 38.6
VMungo0464G0405 Vigna mungo HOM05D000336 ORTHO05D002705 6.0e-06 56.2 84 35.7
MSTRG.372 Avicennia marina HOM05D000336 ORTHO05D002705 7.8e-06 55.8 84 34.5
A08p36070 Brassica napus HOM05D007190 ORTHO05D009130 7.8e-06 55.8 68 41.2
C08p02440 Brassica napus HOM05D007190 ORTHO05D009130 7.8e-06 55.8 68 41.2
BolC8t47035H Brassica oleracea HOM05D000336 ORTHO05D000593 7.8e-06 55.8 68 41.2
BraA08t35514Z Brassica rapa HOM05D000336 ORTHO05D000593 7.8e-06 55.8 68 41.2
CSS0016673 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D002705 7.8e-06 55.8 128 28.1
CDE08G0518 Ceratophyllum demersum HOM05D000336 ORTHO05D000593 7.8e-06 55.8 70 41.4
Haze_16925 Corylus avellana HOM05D000336 ORTHO05D002705 7.8e-06 55.8 84 34.5
Eucgr.F03145 Eucalyptus grandis HOM05D000336 ORTHO05D002705 7.8e-06 55.8 84 34.5
FAN10G2878 Fragaria x ananassa HOM05D000336 ORTHO05D002705 7.8e-06 55.8 84 35.7
Manes.07G103100 Manihot esculenta HOM05D000336 ORTHO05D002705 7.8e-06 55.8 99 33.3
Mapoly0001s0365 Marchantia polymorpha HOM05D000336 ORTHO05D000593 7.8e-06 55.8 70 38.6
Nitab4.5_0000233g0240 Nicotiana tabacum HOM05D000336 ORTHO05D002705 7.8e-06 55.8 84 35.7
Peaxi162Scf00108g00148 Petunia axillaris HOM05D000336 ORTHO05D002705 7.8e-06 55.8 84 35.7


User provided reference genes

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