Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold135G34923 Striga asiatica HOM05D007296 ORTHO05D009201 2.7e-52 208.4 106 100.0
SGA_v2.0_scaffold18G08254 Striga asiatica HOM05D007296 ORTHO05D009201 9.5e-29 130.2 103 67.0
SalBow1G6940 Salvia bowleyana HOM05D007296 ORTHO05D009201 2.2e-25 119.0 103 63.1
Cc02_g32290 Coffea canephora HOM05D007296 ORTHO05D009201 1.4e-19 99.8 100 57.0
Hma1.2p1_0818F.1_g223340 Hydrangea macrophylla HOM05D007296 ORTHO05D009201 4.0e-19 98.2 103 56.3
CSS0008661 Camellia sinensis var. sinensis HOM05D007296 ORTHO05D009201 2.6e-18 95.5 103 50.5
Dinv33417 Davidia involucrata HOM05D007296 ORTHO05D009201 2.2e-17 92.4 103 51.5
Duzib187G0331 Durio zibethinus HOM05D007296 ORTHO05D009201 1.2e-15 86.7 103 46.6
Lsat_1_v5_gn_2_91081 Lactuca sativa HOM05D007296 ORTHO05D009201 1.6e-15 86.3 96 56.2
Migut.H00030 Erythranthe guttata HOM05D007296 ORTHO05D009201 2.1e-15 85.9 110 50.9
TAR371G0818 Trochodendron aralioides HOM05D007296 ORTHO05D009201 2.7e-15 85.5 104 43.3
CiPaw.03G046500 Carya illinoinensis HOM05D007296 ORTHO05D009201 3.5e-15 85.1 108 48.1
Manes.15G152600 Manihot esculenta HOM05D007296 ORTHO05D009201 4.6e-15 84.7 106 49.1
Nn3g16657 Nelumbo nucifera HOM05D007296 ORTHO05D009201 1.1e-13 80.1 107 43.9
Haze_14767 Corylus avellana HOM05D007296 ORTHO05D009201 1.5e-13 79.7 108 48.1
DCAR_021738 Daucus carota HOM05D000631 ORTHO05D000524 1.9e-13 79.3 103 43.7
CAN.G473.34 Capsicum annuum HOM05D007296 ORTHO05D009201 5.6e-13 77.8 99 48.5
Cfa007330 Carpinus fangiana HOM05D007296 ORTHO05D009201 7.3e-13 77.4 100 49.0
Lsat_1_v5_gn_0_6101 Lactuca sativa HOM05D007296 ORTHO05D009201 7.3e-13 77.4 104 48.1
Thecc.04G021100 Theobroma cacao HOM05D007296 ORTHO05D009201 7.3e-13 77.4 103 44.7
Sabra15G0109100 Salix brachista HOM05D000631 ORTHO05D000524 1.6e-12 76.3 107 41.1
MBI10_g42976_MAGBIO Magnolia biondii HOM05D007296 ORTHO05D009201 2.1e-12 75.9 95 46.3
DCAR_015066 Daucus carota HOM05D007296 ORTHO05D009201 2.8e-12 75.5 98 45.9
PGSC0003DMG400012614 Solanum tuberosum HOM05D007296 ORTHO05D009201 2.8e-12 75.5 101 48.5
TPR.G1088 Trifolium pratense HOM05D007296 ORTHO05D009201 2.8e-12 75.5 106 41.5
Nn4g22550 Nelumbo nucifera HOM05D007296 ORTHO05D009201 6.2e-12 74.3 106 43.4
SGA_v2.0_scaffold47G17522 Striga asiatica HOM05D000631 ORTHO05D000524 6.2e-12 74.3 103 44.7
Ah.12g055220 Amaranthus hybridus HOM05D007296 ORTHO05D009201 1.1e-11 73.6 118 47.5
EL10Ac5g12075 Beta vulgaris HOM05D007296 ORTHO05D009201 3.1e-11 72.0 107 45.8
TWI56G0033 Tripterygium wilfordii HOM05D007296 ORTHO05D009201 3.1e-11 72.0 101 50.5
Glyma.16G068200 Glycine max HOM05D007296 ORTHO05D009201 4.0e-11 71.6 98 46.9
Aqoxy5G03689 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 5.2e-11 71.2 107 40.2
Gohir.A09G030400 Gossypium hirsutum HOM05D007296 ORTHO05D009201 5.2e-11 71.2 103 40.8
Lalb_Chr22g0360681 Lupinus albus HOM05D007296 ORTHO05D009201 5.2e-11 71.2 108 44.4
PGR142G0831 Punica granatum HOM05D007296 ORTHO05D009201 6.8e-11 70.9 99 47.5
Gohir.D09G030000 Gossypium hirsutum HOM05D007296 ORTHO05D009201 8.9e-11 70.5 103 40.8
PSO017G3033 Papaver somniferum HOM05D007296 ORTHO05D009201 8.9e-11 70.5 106 42.5
Migut.K01416 Erythranthe guttata HOM05D007296 ORTHO05D009201 1.2e-10 70.1 104 44.2
Thecc.03G117800 Theobroma cacao HOM05D007296 ORTHO05D009201 1.2e-10 70.1 106 40.6
CiPaw.04G030100 Carya illinoinensis HOM05D007296 ORTHO05D009201 2.0e-10 69.3 99 43.4
Potri.001G342100 Populus trichocarpa HOM05D007296 ORTHO05D009201 2.0e-10 69.3 98 43.9
QL02p073829 Quercus lobata HOM05D007296 ORTHO05D009201 2.0e-10 69.3 98 43.9
Sc16g0004380 Simmondsia chinensis HOM05D007296 ORTHO05D009201 2.6e-10 68.9 107 46.7
Medtr7g033080 Medicago truncatula HOM05D007296 ORTHO05D009201 4.4e-10 68.2 106 40.6
Glyma.19G078800 Glycine max HOM05D007296 ORTHO05D009201 5.8e-10 67.8 98 45.9
Prupe.5G162900 Prunus persica HOM05D007296 ORTHO05D009201 7.6e-10 67.4 108 40.7
ATR0199G042 Amborella trichopoda HOM05D007296 ORTHO05D009201 9.9e-10 67.0 100 45.0
Lj1g0014101 Lotus japonicus HOM05D007296 ORTHO05D009201 9.9e-10 67.0 108 38.9
Cpa.g.sc130.72 Carica papaya HOM05D007296 ORTHO05D009201 1.3e-09 66.6 116 44.8
Ciclev10017118m.g Citrus clementina HOM05D007296 ORTHO05D009201 1.3e-09 66.6 108 44.4
Ca_06610_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 2.2e-09 65.9 107 40.2
Ca_30727_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 2.2e-09 65.9 107 40.2
Aqoxy7G03797 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 2.9e-09 65.5 107 38.3
CiPaw.11G015200 Carya illinoinensis HOM05D007296 ORTHO05D009201 3.8e-09 65.1 108 40.7
Ca_30679_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 4.9e-09 64.7 105 38.1
ECA246G1504 Erigeron canadensis HOM05D007296 ORTHO05D009201 4.9e-09 64.7 99 40.4
Psat3g172000 Pisum sativum HOM05D007296 ORTHO05D009201 4.9e-09 64.7 98 42.9
Aa31LG11G15190 Aethionema arabicum HOM05D007296 ORTHO05D009201 6.4e-09 64.3 89 49.4
Sp6g29610 Schrenkiella parvula HOM05D007296 ORTHO05D009201 6.4e-09 64.3 100 49.0
THA.LOC104821171 Tarenaya hassleriana HOM05D007296 ORTHO05D009201 6.4e-09 64.3 103 43.7
COL.COLO4_30221 Corchorus olitorius HOM05D007296 ORTHO05D009201 8.4e-09 63.9 99 42.4
Eucgr.I01721 Eucalyptus grandis HOM05D007296 ORTHO05D009201 8.4e-09 63.9 110 43.6
Gohir.A07G055400 Gossypium hirsutum HOM05D007296 ORTHO05D009201 8.4e-09 63.9 112 37.5
Thhalv10014918m.g Eutrema salsugineum HOM05D007296 ORTHO05D009201 1.1e-08 63.5 67 59.7
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 1.1e-08 63.5 98 49.0
Aqoxy3G01286 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 1.4e-08 63.2 107 36.4
C09p62750 Brassica napus HOM05D007296 ORTHO05D009201 1.4e-08 63.2 60 60.0
BolC9t59112H Brassica oleracea HOM05D007296 ORTHO05D009201 1.4e-08 63.2 60 60.0
Ciclev10022926m.g Citrus clementina HOM05D007296 ORTHO05D009201 1.4e-08 63.2 108 38.0
QL10p006090 Quercus lobata HOM05D007296 ORTHO05D009201 1.4e-08 63.2 104 44.2
Carub.0006s1259 Capsella rubella HOM05D007296 ORTHO05D009201 1.9e-08 62.8 67 59.7
Lj4g0005296 Lotus japonicus HOM05D007296 ORTHO05D009201 1.9e-08 62.8 105 35.2
AL6G25130 Arabidopsis lyrata HOM05D007296 ORTHO05D009201 2.4e-08 62.4 98 51.0
CARHR198900 Cardamine hirsuta HOM05D007296 ORTHO05D009201 2.4e-08 62.4 67 59.7
SalBow7G1031 Salvia bowleyana HOM05D007296 ORTHO05D009201 3.2e-08 62.0 103 43.7
AT5G14410 Arabidopsis thaliana HOM05D007296 ORTHO05D009201 7.1e-08 60.8 98 50.0
Gohir.D07G059700 Gossypium hirsutum HOM05D007296 ORTHO05D009201 9.2e-08 60.5 111 36.9
Gorai.001G063200 Gossypium raimondii HOM05D007296 ORTHO05D009201 9.2e-08 60.5 111 36.9
Sopen02g038130 Solanum pennellii HOM05D007296 ORTHO05D009201 1.2e-07 60.1 99 44.4
BcaB08g36986 Brassica carinata HOM05D007296 ORTHO05D009201 2.1e-07 59.3 43 69.8
A10p24110 Brassica napus HOM05D007296 ORTHO05D009201 2.1e-07 59.3 99 44.4
BraA10t44476Z Brassica rapa HOM05D007296 ORTHO05D009201 2.1e-07 59.3 99 44.4
Solyc02g093525.1 Solanum lycopersicum HOM05D007296 ORTHO05D009201 1.3e-06 56.6 99 43.4
Atru.chr6.2441 Acer truncatum HOM05D007296 ORTHO05D009201 2.3e-06 55.8 96 43.8
Prupe.3G295100 Prunus persica HOM05D007296 ORTHO05D009201 2.3e-06 55.8 107 41.1
QL10p006100 Quercus lobata HOM05D007296 ORTHO05D009201 2.3e-06 55.8 98 43.9
Phvul.008G151600 Phaseolus vulgaris HOM05D007296 ORTHO05D009201 3.0e-06 55.5 74 43.2
Glyma.05G042900 Glycine max HOM05D007296 ORTHO05D009201 3.9e-06 55.1 105 33.3


User provided reference genes

Program Settings