Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold135G34899 Striga asiatica HOM05D004010 ORTHO05D004995 0.0e+00 3681.3 1881 100.0
Migut.H00083 Erythranthe guttata HOM05D004010 ORTHO05D004995 0.0e+00 2229.1 1941 62.5
SalBow6G2090 Salvia bowleyana HOM05D004010 ORTHO05D004995 0.0e+00 2166.0 1956 60.3
Dinv33448 Davidia involucrata HOM05D004010 ORTHO05D004995 0.0e+00 1814.7 1929 52.2
Solyc02g086500.3 Solanum lycopersicum HOM05D004010 ORTHO05D004995 0.0e+00 1748.8 1925 50.9
Sopen02g031220 Solanum pennellii HOM05D004010 ORTHO05D004995 0.0e+00 1744.2 1927 50.8
QL02p075066 Quercus lobata HOM05D004010 ORTHO05D004995 0.0e+00 1686.0 1938 48.8
Manes.17G113000 Manihot esculenta HOM05D004010 ORTHO05D004995 0.0e+00 1665.6 1935 48.2
MD09G1028200 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 1652.1 1931 47.6
Prupe.3G290300 Prunus persica HOM05D004010 ORTHO05D004995 0.0e+00 1645.2 1928 48.1
Rhsim10G0018100 Rhododendron simsii HOM05D004010 ORTHO05D004995 0.0e+00 1635.5 2013 46.9
Cfa007379 Carpinus fangiana HOM05D004010 ORTHO05D004995 0.0e+00 1630.5 1927 47.6
TWI36G0979 Tripterygium wilfordii HOM05D004010 ORTHO05D004995 0.0e+00 1624.8 1935 48.1
CiPaw.03G042500 Carya illinoinensis HOM05D004010 ORTHO05D004995 0.0e+00 1617.1 1935 47.4
Sabra16G0225000 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1616.7 2010 46.9
Thecc.04G015900 Theobroma cacao HOM05D004010 ORTHO05D004995 0.0e+00 1615.1 1928 47.0
Potri.001G346000 Populus trichocarpa HOM05D004010 ORTHO05D004995 0.0e+00 1614.0 1929 48.1
Sabra16G0225700 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1608.2 2051 46.4
MD17G1029800 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 1607.4 1927 46.4
RcHm_v2.0_Chr2g0173001 Rosa chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1605.1 1928 47.0
vmacro05856 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 0.0e+00 1598.6 2039 46.0
FvH4_6g51330 Fragaria vesca HOM05D004010 ORTHO05D004995 0.0e+00 1589.7 1928 46.5
Glyma.19G004700 Glycine max HOM05D004010 ORTHO05D004995 0.0e+00 1576.6 1934 46.1
Gorai.006G032700 Gossypium raimondii HOM05D004010 ORTHO05D004995 0.0e+00 1573.9 1931 46.2
CANSAT64G1980 Cannabis sativa HOM05D004010 ORTHO05D004995 0.0e+00 1571.2 1930 46.4
Lalb_Chr24g0397171 Lupinus albus HOM05D004010 ORTHO05D004995 0.0e+00 1570.4 1932 45.9
Lj2g0015656 Lotus japonicus HOM05D004010 ORTHO05D004995 0.0e+00 1561.2 1935 45.5
Nn4g22648 Nelumbo nucifera HOM05D004010 ORTHO05D004995 0.0e+00 1555.0 1928 46.1
Haze_14730 Corylus avellana HOM05D004010 ORTHO05D004995 0.0e+00 1552.0 1998 45.2
Ca_04154_v3 Cicer arietinum L. HOM05D004010 ORTHO05D004995 0.0e+00 1535.0 1929 45.5
arahy.Tifrunner.gnm1.ann1.8M6LVM Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 1528.1 1929 45.0
DCAR_001437 Daucus carota HOM05D004010 ORTHO05D004995 0.0e+00 1525.4 1926 45.7
HanXRQChr09g0255111 Helianthus annuus HOM05D004010 ORTHO05D004995 0.0e+00 1525.4 1934 46.3
TPR.G14085 Trifolium pratense HOM05D004010 ORTHO05D004995 0.0e+00 1521.9 1931 45.0
Medtr6g005010 Medicago truncatula HOM05D004010 ORTHO05D004995 0.0e+00 1506.9 1935 44.7
VMungo0464G1595 Vigna mungo HOM05D004010 ORTHO05D004995 0.0e+00 1505.7 1945 45.3
Aqoxy3G01154 Aquilegia oxysepala HOM05D004010 ORTHO05D004995 0.0e+00 1504.2 1931 45.1
Lsat_1_v5_gn_4_183480 Lactuca sativa HOM05D004010 ORTHO05D004995 0.0e+00 1501.5 1946 45.2
arahy.Tifrunner.gnm1.ann1.TK4K1F Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 1496.9 1958 44.1
Eucgr.I01751 Eucalyptus grandis HOM05D004010 ORTHO05D004995 0.0e+00 1496.9 1933 44.7
Phvul.004G009818 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1491.5 1929 45.1
ECA232G4079 Erigeron canadensis HOM05D004010 ORTHO05D004995 0.0e+00 1485.3 1924 45.3
TAR371G0622 Trochodendron aralioides HOM05D004010 ORTHO05D004995 0.0e+00 1481.5 1772 47.4
Nitab4.5_0006802g0030 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1477.2 1957 44.8
FAN05G5546 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1474.5 1929 44.3
Sed0022234 Sechium edule HOM05D004010 ORTHO05D004995 0.0e+00 1467.2 1929 43.9
FAN14G1482 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1466.4 1929 44.1
FAN09G4321 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1456.4 1930 43.9
BcaC06g30965 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1454.1 1920 43.8
CsaV3_3G042730 Cucumis sativus L. HOM05D004010 ORTHO05D004995 0.0e+00 1453.3 1926 43.1
PSO478G2834 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1450.6 1945 43.5
PSO017G0470 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1450.3 1948 43.2
PGR142G3424 Punica granatum HOM05D004010 ORTHO05D004995 0.0e+00 1448.0 1932 43.3
Carub.0005s0611 Capsella rubella HOM05D004010 ORTHO05D004995 0.0e+00 1444.1 1922 43.6
BraA06t27018Z Brassica rapa HOM05D004010 ORTHO05D004995 0.0e+00 1439.5 1922 43.6
Peaxi162Scf00129g01535 Petunia axillaris HOM05D004010 ORTHO05D004995 0.0e+00 1437.9 1944 44.4
A06p40990 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1436.0 1922 43.5
Gohir.D09G028100 Gossypium hirsutum HOM05D004010 ORTHO05D004995 0.0e+00 1433.3 1778 45.8
BcaC06g33789 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1431.4 1919 43.1
C07p36860 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1431.4 1919 43.1
BolC7t44198H Brassica oleracea HOM05D004010 ORTHO05D004995 0.0e+00 1431.4 1919 43.1
MELO3C009985.2 Cucumis melo HOM05D004010 ORTHO05D004995 0.0e+00 1431.4 1932 42.6
Sp2g16800 Schrenkiella parvula HOM05D004010 ORTHO05D004995 0.0e+00 1431.0 1924 43.1
AL5G17090 Arabidopsis lyrata HOM05D004010 ORTHO05D004995 0.0e+00 1417.5 1923 43.1
GSVIVG01032418001 Vitis vinifera HOM05D004010 ORTHO05D004995 0.0e+00 1406.0 1912 44.1
CSS0029677 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1405.2 1577 50.2
AT3G27670 Arabidopsis thaliana HOM05D004010 ORTHO05D004995 0.0e+00 1403.7 1924 43.0
ClCG10G013960 Citrullus lanatus HOM05D004010 ORTHO05D004995 0.0e+00 1400.6 1934 42.5
Psat1g055320 Pisum sativum HOM05D004010 ORTHO05D004995 0.0e+00 1391.3 1799 44.1
THA.LOC104825324 Tarenaya hassleriana HOM05D004010 ORTHO05D004995 0.0e+00 1370.9 1929 41.6
Aa31LG2G5000 Aethionema arabicum HOM05D004010 ORTHO05D004995 0.0e+00 1365.1 1930 42.4
CSS0006564 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1343.6 1523 49.7
Thhalv10003508m.g Eutrema salsugineum HOM05D004010 ORTHO05D004995 0.0e+00 1298.1 1785 43.1
Oeu006813.1 Olea europaea HOM05D004010 ORTHO05D004995 0.0e+00 1292.3 1277 56.4
CAN.G473.4 Capsicum annuum HOM05D004010 ORTHO05D004995 0.0e+00 1290.0 1435 50.2
Sc03g0007550 Simmondsia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1286.2 1722 44.4
Nitab4.5_0002682g0110 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1283.9 1958 41.6
PGSC0003DMG400012627 Solanum tuberosum HOM05D004010 ORTHO05D004995 0.0e+00 1277.3 1225 55.2
Ciclev10014033m.g Citrus clementina HOM05D004010 ORTHO05D004995 0.0e+00 1276.9 1582 46.2
AUR62043055 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1253.0 1920 40.2
Duzib187G0443 Durio zibethinus HOM05D004010 ORTHO05D004995 0.0e+00 1219.9 1909 39.2
EL10Ac4g08587 Beta vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1211.8 1934 39.6
ATR1158G023 Amborella trichopoda HOM05D004010 ORTHO05D004995 0.0e+00 1203.3 1946 38.7
Cc07_g01800 Coffea canephora HOM05D004010 ORTHO05D004995 0.0e+00 1182.9 1422 47.5
AUR62034752 Chenopodium quinoa HOM05D004010 ORTHO05D004995 1.2e-310 1070.8 2117 35.0
Os01g0169500 Oryza sativa ssp. japonica HOM05D004010 ORTHO05D004995 2.6e-302 1043.1 1919 36.1
Actinidia36110 Actinidia chinensis HOM05D004010 ORTHO05D004995 1.7e-301 1040.4 1251 48.0
MBI10_g32033_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 2.7e-291 1006.5 1435 42.9
Zm00001eb123050 Zea mays HOM05D004010 ORTHO05D004995 4.0e-287 992.6 1931 36.0
Hund06718 Selenicereus undatus HOM05D004010 ORTHO05D004995 1.6e-232 811.2 1032 45.4
Lju41A39T81 Lonicera japonica HOM05D004010 ORTHO05D004995 5.9e-222 776.2 833 51.1
COL.COLO4_29097 Corchorus olitorius HOM05D004010 ORTHO05D004995 1.6e-216 758.1 1041 42.4
CARHR149120 Cardamine hirsuta HOM05D004010 ORTHO05D004995 2.6e-193 681.0 1007 41.1
Mapoly0001s0420 Marchantia polymorpha HOM05D004010 ORTHO05D004995 3.1e-191 674.1 2018 28.7
Atru.chr6.2370 Acer truncatum HOM05D004010 ORTHO05D004995 1.6e-187 661.8 629 55.2
Lju41A39G70 Lonicera japonica HOM05D004010 ORTHO05D004995 3.7e-184 650.6 1018 40.9
Actinidia36109 Actinidia chinensis HOM05D004010 ORTHO05D004995 3.4e-169 600.9 641 51.6
Phvul.004G009761 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 5.4e-159 567.0 614 50.2
Cpa.g.sc108.59 Carica papaya HOM05D004010 ORTHO05D004995 6.2e-155 553.5 798 41.5
Hund06717 Selenicereus undatus HOM05D004010 ORTHO05D004995 2.8e-147 528.1 930 36.3
SMO361G0448 Selaginella moellendorffii HOM05D004010 ORTHO05D004995 7.6e-145 520.0 1898 26.2
vmacro05456 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 8.4e-144 516.5 824 39.6
Phvul.004G009161 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.1e-140 506.1 642 45.8
Cpa.g.sc108.58 Carica papaya HOM05D004010 ORTHO05D004995 1.2e-137 496.1 1154 32.1
CDE05G1248 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 9.9e-137 493.0 780 38.2
COL.COLO4_29096 Corchorus olitorius HOM05D004010 ORTHO05D004995 1.5e-132 479.2 522 50.8
Phvul.004G009536 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 7.6e-129 466.8 537 48.4
FAN05G3555 Fragaria x ananassa HOM05D004010 ORTHO05D004995 7.4e-124 450.3 587 43.4
Sopen00g011090 Solanum pennellii HOM05D004010 ORTHO05D004995 2.4e-122 445.3 410 58.3
Oeu006812.1 Olea europaea HOM05D004010 ORTHO05D004995 6.4e-120 437.2 431 55.7
Cc07_g01810 Coffea canephora HOM05D004010 ORTHO05D004995 5.1e-117 427.6 433 52.0
Phvul.004G009109 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 7.9e-94 350.5 451 44.6
Phvul.007G113156 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 7.4e-92 344.0 341 53.4
Prupe.3G290500 Prunus persica HOM05D004010 ORTHO05D004995 1.5e-84 319.7 460 42.6
Ciclev10017517m.g Citrus clementina HOM05D004010 ORTHO05D004995 2.0e-84 319.3 350 47.4
unitig_0.g541 Utricularia gibba HOM05D004010 ORTHO05D004995 2.0e-84 319.3 332 55.1
CDE05G2835 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 9.1e-82 310.5 610 35.2
CDE05G1902 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 5.9e-81 307.8 336 48.5
vmacro05455 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 8.2e-75 287.3 547 36.2
Hma1.2p1_1291F.1_g273520 Hydrangea macrophylla HOM05D004010 ORTHO05D004995 7.0e-74 284.3 400 42.8
CSS0026540 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 2.0e-73 282.7 350 46.3
Gohir.A09G028500 Gossypium hirsutum HOM05D004010 ORTHO05D004995 2.0e-73 282.7 449 38.3
Phvul.004G009118 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.1e-66 260.4 439 37.4
SEGI_20333 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 5.0e-64 251.5 444 35.6
Sopen00g012710 Solanum pennellii HOM05D004010 ORTHO05D004995 3.3e-63 248.8 276 47.5
Psat2g096200 Pisum sativum HOM05D004010 ORTHO05D004995 3.3e-55 222.2 266 46.2
Atru.chr6.2368 Acer truncatum HOM05D004010 ORTHO05D004995 2.1e-54 219.5 216 53.2
CSS0021155 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 9.8e-52 210.7 228 50.9
SEGI_19034 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 4.9e-51 208.4 585 28.9
Atru.chr6.2275 Acer truncatum HOM05D004010 ORTHO05D004995 8.6e-48 197.6 195 53.8
Actinidia15573 Actinidia chinensis HOM05D004010 ORTHO05D004995 5.6e-47 194.9 223 48.4
CBR_g19445 Chara braunii HOM05D004010 ORTHO05D004995 4.4e-44 185.3 841 24.6
MBI10_g46391_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 4.9e-43 181.8 277 40.1
Phvul.004G009701 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.6e-38 166.8 188 47.9
Atru.chr6.2281 Acer truncatum HOM05D004010 ORTHO05D004995 4.7e-38 165.2 158 56.3
MBI10_g39276_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 1.2e-36 160.6 223 42.6
Atru.chr6.2279 Acer truncatum HOM05D004010 ORTHO05D004995 3.4e-36 159.1 149 55.0
CAN.G473.5 Capsicum annuum HOM05D004010 ORTHO05D004995 1.6e-33 150.2 135 61.5
MBI10_g38112_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 1.7e-32 146.7 265 35.1
Actinidia15574 Actinidia chinensis HOM05D004010 ORTHO05D004995 6.6e-32 144.8 191 43.5
HPP92_004912 Vanilla planifolia HOM05D004010 ORTHO05D004995 2.0e-28 133.3 155 49.0
FvH4_6g51551 Fragaria vesca HOM05D004010 ORTHO05D004995 2.9e-27 129.4 132 47.7
RcHm_v2.0_Chr5g0081041 Rosa chinensis HOM05D004010 ORTHO05D004995 1.4e-26 127.1 176 40.9
FAN14G1049 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.6e-25 123.6 222 36.5
Atru.chr6.2371 Acer truncatum HOM05D004010 ORTHO05D004995 8.7e-24 117.9 139 45.3
Phvul.004G009127 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 7.3e-23 114.8 135 50.4
Phvul.004G008861 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.6e-22 113.6 104 54.8
CBR_g19447 Chara braunii HOM05D004010 ORTHO05D004995 8.1e-22 111.3 925 21.8
FAN14G2166 Fragaria x ananassa HOM05D004010 ORTHO05D004995 8.1e-22 111.3 148 45.9
Ah.06g187170 Amaranthus hybridus HOM05D004010 ORTHO05D004995 1.4e-21 110.5 138 47.8
FvH4_5g31861 Fragaria vesca HOM05D004010 ORTHO05D046033 2.4e-21 109.8 85 63.5
FvH4_6g51560 Fragaria vesca HOM05D004010 ORTHO05D004995 1.2e-20 107.5 123 40.7
Phvul.007G112678 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 4.4e-20 105.5 99 53.5
BcaB05g24178 Brassica carinata HOM05D004010 ORTHO05D027244 1.3e-19 104.0 223 32.3
FAN05G1652 Fragaria x ananassa HOM05D004010 ORTHO05D004995 4.6e-17 95.5 170 34.1
FAN02G4182 Fragaria x ananassa HOM05D004010 ORTHO05D004995 2.3e-16 93.2 170 34.1
Atru.chr6.2280 Acer truncatum HOM05D004010 ORTHO05D004995 3.0e-16 92.8 101 46.5
SEGI_32252 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 3.0e-16 92.8 75 54.7
FvH4_6g51542 Fragaria vesca HOM05D004010 ORTHO05D004995 1.9e-15 90.1 176 33.0
FvH4_6g51540 Fragaria vesca HOM05D004010 ORTHO05D004995 9.0e-13 81.3 93 40.9
Phvul.004G009000 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 4.5e-12 79.0 107 43.0
TPR.G14087 Trifolium pratense HOM05D004010 ORTHO05D004995 3.2e-10 72.8 55 60.0
BcaC02g11087 Brassica carinata HOM05D004010 ORTHO05D006095 3.9e-08 65.9 105 39.0
Atru.chr6.2369 Acer truncatum HOM05D004010 ORTHO05D004995 1.1e-07 64.3 130 33.1
HPP92_004913 Vanilla planifolia HOM05D004010 ORTHO05D004995 1.1e-07 64.3 80 50.0
BcaB07g33347 Brassica carinata HOM05D004010 ORTHO05D004995 7.4e-07 61.6 64 45.3
FvH4_6g51541 Fragaria vesca HOM05D004010 ORTHO05D004995 9.6e-07 61.2 53 60.4
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 2.1e-06 60.1 42 69.0
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 2.1e-06 60.1 42 69.0


User provided reference genes

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