Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold135G34854 Striga asiatica HOM05D005599 ORTHO05D006921 5.1e-75 284.3 138 100.0
SGA_v2.0_scaffold2G00929 Striga asiatica HOM05D005599 ORTHO05D006921 3.2e-16 89.0 48 79.2
SGA_v2.0_scaffold154G37132 Striga asiatica HOM05D005599 ORTHO05D006921 2.0e-15 86.3 44 81.8
SGA_v2.0_scaffold181G39695 Striga asiatica HOM05D005599 ORTHO05D006921 2.0e-15 86.3 44 81.8
ECA236G1659 Erigeron canadensis HOM05D005599 ORTHO05D006921 1.3e-14 83.6 40 85.0
vmacro14440 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 1.3e-14 83.6 44 77.3
HanXRQChr12g0364441 Helianthus annuus HOM05D005599 ORTHO05D006921 1.7e-14 83.2 48 72.9
vmacro00414 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 1.7e-14 83.2 43 79.1
unitig_899.g15269 Utricularia gibba HOM05D005599 ORTHO05D006921 2.3e-14 82.8 43 74.4
AUR62042684 Chenopodium quinoa HOM05D005599 ORTHO05D006921 3.0e-14 82.4 45 75.6
Migut.M00054 Erythranthe guttata HOM05D005599 ORTHO05D006921 3.9e-14 82.0 44 75.0
Dinv07654 Davidia involucrata HOM05D005599 ORTHO05D006921 5.0e-14 81.6 44 72.7
Dinv14427 Davidia involucrata HOM05D005599 ORTHO05D006921 5.0e-14 81.6 44 72.7
Rhsim09G0066400 Rhododendron simsii HOM05D005599 ORTHO05D006921 5.0e-14 81.6 44 72.7
Sabra08G0098500 Salix brachista HOM05D005599 ORTHO05D006921 5.0e-14 81.6 46 76.1
Oeu045860.1 Olea europaea HOM05D005599 ORTHO05D006921 8.6e-14 80.9 40 82.5
EL10Ac9g21851 Beta vulgaris HOM05D005599 ORTHO05D006921 1.5e-13 80.1 44 75.0
AUR62014127 Chenopodium quinoa HOM05D005599 ORTHO05D006921 1.5e-13 80.1 44 75.0
AUR62032768 Chenopodium quinoa HOM05D005599 ORTHO05D006921 1.5e-13 80.1 44 75.0
Cc11_g08600 Coffea canephora HOM05D005599 ORTHO05D006921 1.5e-13 80.1 44 72.7
Solyc04g007700.3 Solanum lycopersicum HOM05D005599 ORTHO05D006921 1.5e-13 80.1 43 74.4
Sopen04g002790 Solanum pennellii HOM05D005599 ORTHO05D006921 1.5e-13 80.1 43 74.4
SGA_v2.0_scaffold6G03128 Striga asiatica HOM05D005599 ORTHO05D006921 1.5e-13 80.1 40 85.0
Ah.04g163140 Amaranthus hybridus HOM05D005599 ORTHO05D006921 1.9e-13 79.7 52 63.5
CSS0007655 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 1.9e-13 79.7 43 74.4
CSS0037826 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 1.9e-13 79.7 43 74.4
HanXRQChr08g0212121 Helianthus annuus HOM05D005599 ORTHO05D006921 1.9e-13 79.7 40 80.0
Oeu003383.1 Olea europaea HOM05D005599 ORTHO05D006921 1.9e-13 79.7 40 77.5
Potri.008G129900 Populus trichocarpa HOM05D005599 ORTHO05D006921 1.9e-13 79.7 44 75.0
QL01p001565 Quercus lobata HOM05D005599 ORTHO05D006921 1.9e-13 79.7 52 63.5
Lsat_1_v5_gn_9_79661 Lactuca sativa HOM05D005599 ORTHO05D006921 2.5e-13 79.3 40 77.5
Potri.010G112300 Populus trichocarpa HOM05D005599 ORTHO05D006921 2.5e-13 79.3 44 75.0
PGSC0003DMG400005984 Solanum tuberosum HOM05D005599 ORTHO05D006921 2.5e-13 79.3 44 70.5
Hma1.2p1_0096F.1_g047800 Hydrangea macrophylla HOM05D005599 ORTHO05D006921 3.3e-13 79.0 44 70.5
Hund09673 Selenicereus undatus HOM05D005599 ORTHO05D006921 3.3e-13 79.0 40 82.5
CSS0001207 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 4.3e-13 78.6 43 69.8
Os01g0606050 Oryza sativa ssp. japonica HOM05D005599 ORTHO05D006921 7.3e-13 77.8 44 70.5
MBI16_g23758_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 9.5e-13 77.4 44 70.5
CAN.G1244.3 Capsicum annuum HOM05D005599 ORTHO05D006921 1.2e-12 77.0 52 61.5
THA.LOC104823847 Tarenaya hassleriana HOM05D005599 ORTHO05D006921 1.2e-12 77.0 40 77.5
TWI79G1349 Tripterygium wilfordii HOM05D005599 ORTHO05D006921 1.2e-12 77.0 40 80.0
Atru.chr11.497 Acer truncatum HOM05D005599 ORTHO05D006921 1.6e-12 76.6 40 77.5
CiPaw.06G011400 Carya illinoinensis HOM05D005599 ORTHO05D006921 1.6e-12 76.6 40 77.5
DCAR_023596 Daucus carota HOM05D005599 ORTHO05D006921 1.6e-12 76.6 44 65.9
Sabra10G0082600 Salix brachista HOM05D005599 ORTHO05D006921 1.6e-12 76.6 46 69.6
HPP92_003868 Vanilla planifolia HOM05D005599 ORTHO05D006921 1.6e-12 76.6 44 70.5
HPP92_003899 Vanilla planifolia HOM05D005599 ORTHO05D006921 1.6e-12 76.6 44 70.5
Zm00001eb161570 Zea mays HOM05D005599 ORTHO05D006921 1.6e-12 76.6 44 70.5
COL.COLO4_20491 Corchorus olitorius HOM05D005599 ORTHO05D006921 2.1e-12 76.3 44 70.5
MELO3C018308.2 Cucumis melo HOM05D005599 ORTHO05D006921 2.1e-12 76.3 44 68.2
Duzib251G0393 Durio zibethinus HOM05D005599 ORTHO05D006921 2.1e-12 76.3 44 70.5
Thecc.02G282300 Theobroma cacao HOM05D005599 ORTHO05D006921 2.1e-12 76.3 44 70.5
Cpa.g.sc65.146 Carica papaya HOM05D005599 ORTHO05D006921 2.8e-12 75.9 43 72.1
Peaxi162Scf00253g01125 Petunia axillaris HOM05D005599 ORTHO05D006921 2.8e-12 75.9 44 70.5
Sed0017153 Sechium edule HOM05D005599 ORTHO05D006921 2.8e-12 75.9 44 68.2
arahy.Tifrunner.gnm1.ann1.5G098T Arachis hypogaea HOM05D005599 ORTHO05D006921 3.6e-12 75.5 49 61.2
arahy.Tifrunner.gnm1.ann1.UU8CC3 Arachis hypogaea HOM05D005599 ORTHO05D006921 3.6e-12 75.5 49 61.2
arahy.Tifrunner.gnm1.ann1.XM49AS Arachis hypogaea HOM05D005599 ORTHO05D006921 3.6e-12 75.5 49 61.2
MSTRG.6631 Avicennia marina HOM05D005599 ORTHO05D006921 3.6e-12 75.5 44 68.2
BcaB02g06563 Brassica carinata HOM05D005599 ORTHO05D006921 3.6e-12 75.5 44 65.9
Ciclev10017195m.g Citrus clementina HOM05D005599 ORTHO05D006921 3.6e-12 75.5 40 77.5
FAN05G3069 Fragaria x ananassa HOM05D005599 ORTHO05D006921 3.6e-12 75.5 44 68.2
FAN12G4015 Fragaria x ananassa HOM05D005599 ORTHO05D006921 3.6e-12 75.5 44 68.2
FAN25G3147 Fragaria x ananassa HOM05D005599 ORTHO05D006921 3.6e-12 75.5 44 68.2
Nitab4.5_0000426g0280 Nicotiana tabacum HOM05D005599 ORTHO05D006921 3.6e-12 75.5 44 68.2
Nitab4.5_0004230g0050 Nicotiana tabacum HOM05D005599 ORTHO05D006921 3.6e-12 75.5 44 68.2
RcHm_v2.0_Chr4g0425701 Rosa chinensis HOM05D005599 ORTHO05D006921 3.6e-12 75.5 44 68.2
ClCG07G006660 Citrullus lanatus HOM05D005599 ORTHO05D006921 4.7e-12 75.1 40 75.0
FvH4_4g19980 Fragaria vesca HOM05D005599 ORTHO05D006921 4.7e-12 75.1 43 69.8
Manes.15G128100 Manihot esculenta HOM05D005599 ORTHO05D006921 4.7e-12 75.1 44 68.2
Prupe.1G325600 Prunus persica HOM05D005599 ORTHO05D006921 4.7e-12 75.1 44 68.2
PGR004G1422 Punica granatum HOM05D005599 ORTHO05D006921 4.7e-12 75.1 44 65.9
GSVIVG01011752001 Vitis vinifera HOM05D005599 ORTHO05D006921 4.7e-12 75.1 40 75.0
Phvul.001G094900 Phaseolus vulgaris HOM05D005599 ORTHO05D006921 6.2e-12 74.7 40 75.0
ATR0796G095 Amborella trichopoda HOM05D005599 ORTHO05D006921 8.1e-12 74.3 44 70.5
BraA06t24281Z Brassica rapa HOM05D005599 ORTHO05D006921 8.1e-12 74.3 46 63.0
Cfa008617 Carpinus fangiana HOM05D005599 ORTHO05D006921 8.1e-12 74.3 44 65.9
FAN07G1516 Fragaria x ananassa HOM05D005599 ORTHO05D006921 8.1e-12 74.3 44 68.2
MD13G1024900 Malus domestica HOM05D005599 ORTHO05D006921 8.1e-12 74.3 43 69.8
MD16G1027400 Malus domestica HOM05D005599 ORTHO05D006921 8.1e-12 74.3 43 69.8
BolC8t52072H Brassica oleracea HOM05D005599 ORTHO05D006921 1.1e-11 73.9 46 63.0
BraA09t41538Z Brassica rapa HOM05D005599 ORTHO05D006921 1.1e-11 73.9 46 63.0
Haze_10995 Corylus avellana HOM05D005599 ORTHO05D006921 1.1e-11 73.9 43 67.4
CsaV3_5G013870 Cucumis sativus L. HOM05D005599 ORTHO05D006921 1.1e-11 73.9 40 72.5
Glyma.16G057902 Glycine max HOM05D005599 ORTHO05D006921 1.1e-11 73.9 40 72.5
Glyma.19G089600 Glycine max HOM05D005599 ORTHO05D006921 1.1e-11 73.9 40 72.5
Gohir.A03G120800 Gossypium hirsutum HOM05D005599 ORTHO05D006921 1.1e-11 73.9 44 65.9
Lj6g0000510 Lotus japonicus HOM05D005599 ORTHO05D006921 1.1e-11 73.9 40 72.5
PSO170G3715 Papaver somniferum HOM05D005599 ORTHO05D006921 1.1e-11 73.9 44 63.6
PSO782G0484 Papaver somniferum HOM05D005599 ORTHO05D006921 1.1e-11 73.9 44 63.6
AL1G27050 Arabidopsis lyrata HOM05D005599 ORTHO05D006921 1.4e-11 73.6 44 63.6
A06p11010 Brassica napus HOM05D005599 ORTHO05D006921 1.4e-11 73.6 44 63.6
A09p61660 Brassica napus HOM05D005599 ORTHO05D006921 1.4e-11 73.6 44 63.6
C05p13060 Brassica napus HOM05D005599 ORTHO05D006921 1.4e-11 73.6 44 63.6
C08p45240 Brassica napus HOM05D005599 ORTHO05D006921 1.4e-11 73.6 45 64.4
Carub.0001s1476 Capsella rubella HOM05D005599 ORTHO05D006921 1.4e-11 73.6 44 63.6
CARHR015530 Cardamine hirsuta HOM05D005599 ORTHO05D006921 1.4e-11 73.6 44 63.6
DCAR_026778 Daucus carota HOM05D005599 ORTHO05D006921 1.4e-11 73.6 44 63.6
Gorai.005G161400 Gossypium raimondii HOM05D005599 ORTHO05D006921 1.4e-11 73.6 43 67.4
Medtr1g069405 Medicago truncatula HOM05D005599 ORTHO05D006921 1.4e-11 73.6 44 63.6
Sc14g0007100 Simmondsia chinensis HOM05D005599 ORTHO05D006921 1.4e-11 73.6 40 72.5
Aa31LG2G8490 Aethionema arabicum HOM05D005599 ORTHO05D006921 1.8e-11 73.2 40 72.5
arahy.Tifrunner.gnm1.ann1.5FG4B2 Arachis hypogaea HOM05D005599 ORTHO05D006921 1.8e-11 73.2 43 65.1
Thhalv10009435m.g Eutrema salsugineum HOM05D005599 ORTHO05D006921 1.8e-11 73.2 43 65.1
Aqoxy3G01068 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 2.3e-11 72.8 44 61.4
Aqoxy1G03319 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 3.1e-11 72.4 43 62.8
AT1G14990 Arabidopsis thaliana HOM05D005599 ORTHO05D006921 3.1e-11 72.4 44 61.4
BcaC07g38244 Brassica carinata HOM05D005599 ORTHO05D006921 4.0e-11 72.0 46 60.9
C08p09930 Brassica napus HOM05D005599 ORTHO05D006921 4.0e-11 72.0 46 60.9
BolC8t48670H Brassica oleracea HOM05D005599 ORTHO05D006921 4.0e-11 72.0 46 60.9
CDE07G0704 Ceratophyllum demersum HOM05D005599 ORTHO05D006921 4.0e-11 72.0 44 65.9
RcHm_v2.0_Chr4g0441361 Rosa chinensis HOM05D005599 ORTHO05D006921 4.0e-11 72.0 44 65.9
TAR622G1178 Trochodendron aralioides HOM05D005599 ORTHO05D006921 4.0e-11 72.0 44 63.6
Ca_21512_v3 Cicer arietinum L. HOM05D005599 ORTHO05D006921 5.2e-11 71.6 40 67.5
Eucgr.B01298 Eucalyptus grandis HOM05D005599 ORTHO05D006921 5.2e-11 71.6 44 63.6
Gohir.D02G144100 Gossypium hirsutum HOM05D005599 ORTHO05D006921 5.2e-11 71.6 44 63.6
Lalb_Chr08g0237401 Lupinus albus HOM05D005599 ORTHO05D006921 5.2e-11 71.6 44 65.9
Sp1g13380 Schrenkiella parvula HOM05D005599 ORTHO05D006921 6.8e-11 71.2 44 61.4
CANSAT11G1373 Cannabis sativa HOM05D005599 ORTHO05D006921 1.2e-10 70.5 45 62.2
Mapoly0035s0140 Marchantia polymorpha HOM05D005599 ORTHO05D006921 1.2e-10 70.5 54 53.7
Sed0011013 Sechium edule HOM05D005599 ORTHO05D006921 1.2e-10 70.5 43 65.1
TPR.G19139 Trifolium pratense HOM05D005599 ORTHO05D006921 1.2e-10 70.5 40 67.5
BcaC05g25431 Brassica carinata HOM05D005599 ORTHO05D006921 1.5e-10 70.1 40 67.5
BolC5t30050H Brassica oleracea HOM05D005599 ORTHO05D006921 2.0e-10 69.7 41 65.9
Psat6g049960 Pisum sativum HOM05D005599 ORTHO05D006921 2.6e-10 69.3 44 61.4
VMungo0464G0261 Vigna mungo HOM05D005599 ORTHO05D006921 4.4e-10 68.6 40 67.5
SEGI_33740 Sequoiadendron giganteum HOM05D005599 ORTHO05D006921 5.8e-10 68.2 48 58.3
Pp3c16_10100 Physcomitrium patens HOM05D005599 ORTHO05D006921 1.3e-09 67.0 44 56.8
Eucgr.E01608 Eucalyptus grandis HOM05D005599 ORTHO05D006921 8.3e-09 64.3 43 58.1
CBR_g40805 Chara braunii HOM05D005599 ORTHO05D006921 3.2e-08 62.4 42 52.4
DCAR_032107 Daucus carota HOM05D005599 ORTHO05D006921 1.6e-07 60.1 38 52.6
QL08p008929 Quercus lobata HOM05D005599 ORTHO05D006921 2.7e-07 59.3 41 68.3


User provided reference genes

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