Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold135G34838 Striga asiatica HOM05D005389 ORTHO05D008484 0.0e+00 1928.3 989 100.0
Migut.H00153 Erythranthe guttata HOM05D005389 ORTHO05D008484 0.0e+00 1618.2 993 83.7
SalBow1G5751 Salvia bowleyana HOM05D005389 ORTHO05D008484 0.0e+00 1609.3 990 82.1
Cc07_g02570 Coffea canephora HOM05D005389 ORTHO05D008484 0.0e+00 1440.6 991 74.2
CiPaw.03G035000 Carya illinoinensis HOM05D005389 ORTHO05D008484 0.0e+00 1437.9 991 72.4
vmacro05794 Vaccinium macrocarpon HOM05D005389 ORTHO05D008484 0.0e+00 1434.9 987 74.1
GSVIVG01032529001 Vitis vinifera HOM05D005389 ORTHO05D008484 0.0e+00 1431.8 991 73.2
Cfa007465 Carpinus fangiana HOM05D005389 ORTHO05D008484 0.0e+00 1428.7 988 72.6
Hma1.2p1_0697F.1_g204985 Hydrangea macrophylla HOM05D005389 ORTHO05D008484 0.0e+00 1426.8 984 73.0
QL02p077913 Quercus lobata HOM05D005389 ORTHO05D008484 0.0e+00 1414.8 991 72.1
Sopen02g031910 Solanum pennellii HOM05D005389 ORTHO05D008484 0.0e+00 1404.0 987 71.9
Gohir.A07G218100 Gossypium hirsutum HOM05D005389 ORTHO05D008484 0.0e+00 1402.1 977 72.0
Nitab4.5_0005206g0050 Nicotiana tabacum HOM05D005389 ORTHO05D008484 0.0e+00 1402.1 993 71.5
Gohir.D07G225200 Gossypium hirsutum HOM05D005389 ORTHO05D008484 0.0e+00 1401.3 987 71.5
Solyc02g087170.4 Solanum lycopersicum HOM05D005389 ORTHO05D008484 0.0e+00 1401.3 987 71.7
TAR374G1603 Trochodendron aralioides HOM05D005389 ORTHO05D008484 0.0e+00 1401.3 992 72.1
Gorai.001G259600 Gossypium raimondii HOM05D005389 ORTHO05D008484 0.0e+00 1400.2 987 71.6
CAN.G206.54 Capsicum annuum HOM05D005389 ORTHO05D008484 0.0e+00 1399.0 985 72.0
Thecc.04G003900 Theobroma cacao HOM05D005389 ORTHO05D008484 0.0e+00 1398.3 989 71.4
PGSC0003DMG400000509 Solanum tuberosum HOM05D005389 ORTHO05D008484 0.0e+00 1395.9 987 71.2
Eucgr.I01836 Eucalyptus grandis HOM05D005389 ORTHO05D008484 0.0e+00 1393.3 984 72.1
Lju41A31T33 Lonicera japonica HOM05D005389 ORTHO05D008484 0.0e+00 1390.9 1002 71.9
HanXRQChr09g0265861 Helianthus annuus HOM05D005389 ORTHO05D008484 0.0e+00 1383.2 987 71.2
CSS0036605 Camellia sinensis var. sinensis HOM05D005389 ORTHO05D008484 0.0e+00 1380.2 996 71.7
Lj1g0011358 Lotus japonicus HOM05D005389 ORTHO05D008484 0.0e+00 1379.4 978 71.3
TWI36G1051 Tripterygium wilfordii HOM05D005389 ORTHO05D008484 0.0e+00 1378.6 988 70.9
Sabra16G0230200 Salix brachista HOM05D005389 ORTHO05D008484 0.0e+00 1375.1 989 70.5
Lsat_1_v5_gn_4_181101 Lactuca sativa HOM05D005389 ORTHO05D008484 0.0e+00 1372.5 986 70.9
Ciclev10010988m.g Citrus clementina HOM05D005389 ORTHO05D008484 0.0e+00 1371.7 987 70.6
DCAR_013961 Daucus carota HOM05D005389 ORTHO05D008484 0.0e+00 1370.1 966 71.7
Glyma.01G077400 Glycine max HOM05D005389 ORTHO05D008484 0.0e+00 1369.4 980 70.6
Prupe.3G279400 Prunus persica HOM05D005389 ORTHO05D008484 0.0e+00 1369.4 990 70.2
arahy.Tifrunner.gnm1.ann1.D3X87A Arachis hypogaea HOM05D005389 ORTHO05D008484 0.0e+00 1368.2 984 69.8
arahy.Tifrunner.gnm1.ann1.T59QJ9 Arachis hypogaea HOM05D005389 ORTHO05D008484 0.0e+00 1367.8 985 69.7
PGR142G1957 Punica granatum HOM05D005389 ORTHO05D008484 0.0e+00 1366.3 990 70.3
Lalb_Chr21g0316351 Lupinus albus HOM05D005389 ORTHO05D008484 0.0e+00 1365.9 978 70.8
Sc06g0002580 Simmondsia chinensis HOM05D005389 ORTHO05D008484 0.0e+00 1365.9 961 71.7
Psat3g165760 Pisum sativum HOM05D005389 ORTHO05D008484 0.0e+00 1365.5 986 70.0
Potri.001G350700 Populus trichocarpa HOM05D005389 ORTHO05D008484 0.0e+00 1363.2 989 70.2
COL.COLO4_06141 Corchorus olitorius HOM05D005389 ORTHO05D008484 0.0e+00 1362.8 976 71.0
Phvul.008G153100 Phaseolus vulgaris HOM05D005389 ORTHO05D008484 0.0e+00 1362.4 980 70.3
Medtr7g030060 Medicago truncatula HOM05D005389 ORTHO05D008484 0.0e+00 1360.9 981 69.9
Medtr7g038700 Medicago truncatula HOM05D005389 ORTHO05D008484 0.0e+00 1360.9 981 69.9
RcHm_v2.0_Chr2g0170441 Rosa chinensis HOM05D005389 ORTHO05D008484 0.0e+00 1360.1 985 70.3
THA.LOC104821073 Tarenaya hassleriana HOM05D005389 ORTHO05D008484 0.0e+00 1358.6 977 69.4
MD17G1039500 Malus domestica HOM05D005389 ORTHO05D008484 0.0e+00 1355.9 972 71.3
MD09G1038400 Malus domestica HOM05D005389 ORTHO05D008484 0.0e+00 1352.8 972 71.4
Ah.16g106960 Amaranthus hybridus HOM05D005389 ORTHO05D008484 0.0e+00 1340.5 989 69.0
Haze_14630 Corylus avellana HOM05D005389 ORTHO05D008484 0.0e+00 1339.3 1028 67.1
MBI14_g02685_MAGBIO Magnolia biondii HOM05D005389 ORTHO05D008484 0.0e+00 1338.9 998 69.1
FvH4_6g50180 Fragaria vesca HOM05D005389 ORTHO05D008484 0.0e+00 1334.3 980 69.2
AT3G01380 Arabidopsis thaliana HOM05D005389 ORTHO05D008484 0.0e+00 1333.2 978 68.0
Carub.0003s0071 Capsella rubella HOM05D005389 ORTHO05D008484 0.0e+00 1332.8 979 68.1
Thhalv10022528m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 0.0e+00 1332.0 979 68.2
ECA232G1242 Erigeron canadensis HOM05D005389 ORTHO05D008484 0.0e+00 1330.9 965 69.9
BcaC05g30466 Brassica carinata HOM05D005389 ORTHO05D008484 0.0e+00 1327.0 979 67.7
C09p75190 Brassica napus HOM05D005389 ORTHO05D008484 0.0e+00 1325.1 982 67.6
Sp3g00690 Schrenkiella parvula HOM05D005389 ORTHO05D008484 0.0e+00 1324.3 981 68.0
BraA05t23196Z Brassica rapa HOM05D005389 ORTHO05D008484 0.0e+00 1323.1 981 67.6
A05p44600 Brassica napus HOM05D005389 ORTHO05D008484 0.0e+00 1322.0 981 67.6
Aqoxy3G00899 Aquilegia oxysepala HOM05D005389 ORTHO05D008484 0.0e+00 1317.8 965 69.7
BolC5t35145H Brassica oleracea HOM05D005389 ORTHO05D008484 0.0e+00 1317.8 957 68.5
PSO161G0132 Papaver somniferum HOM05D005389 ORTHO05D008484 0.0e+00 1313.1 996 69.0
AL3G10820 Arabidopsis lyrata HOM05D005389 ORTHO05D008484 0.0e+00 1310.4 1023 65.3
PSO478G0736 Papaver somniferum HOM05D005389 ORTHO05D008484 0.0e+00 1307.0 996 69.1
Manes.17G118300 Manihot esculenta HOM05D005389 ORTHO05D008484 0.0e+00 1291.2 913 71.4
Ca_19612_v3 Cicer arietinum L. HOM05D005389 ORTHO05D008484 0.0e+00 1288.1 929 69.9
Aa31LG5G10500 Aethionema arabicum HOM05D005389 ORTHO05D008484 0.0e+00 1272.3 1019 64.5
FAN05G2940 Fragaria x ananassa HOM05D005389 ORTHO05D008484 0.0e+00 1261.5 979 66.1
ATR0800G105 Amborella trichopoda HOM05D005389 ORTHO05D008484 0.0e+00 1253.4 992 64.3
FAN14G3523 Fragaria x ananassa HOM05D005389 ORTHO05D008484 0.0e+00 1250.7 995 64.9
Hund19981 Selenicereus undatus HOM05D005389 ORTHO05D008484 0.0e+00 1241.1 1036 61.5
AUR62037862 Chenopodium quinoa HOM05D005389 ORTHO05D008484 0.0e+00 1224.2 936 67.4
FAN02G4477 Fragaria x ananassa HOM05D005389 ORTHO05D008484 0.0e+00 1199.9 979 63.9
FAN09G2300 Fragaria x ananassa HOM05D005389 ORTHO05D008484 0.0e+00 1199.1 977 64.0
Duzib264G0565 Durio zibethinus HOM05D005389 ORTHO05D008484 0.0e+00 1194.5 989 63.5
Rhsim10G0027600 Rhododendron simsii HOM05D005389 ORTHO05D008484 0.0e+00 1190.6 909 68.3
Nitab4.5_0001952g0170 Nicotiana tabacum HOM05D005389 ORTHO05D008484 0.0e+00 1176.8 862 68.6
Prupe.2G019300 Prunus persica HOM05D005389 ORTHO05D008484 0.0e+00 1158.7 1016 60.7
Zm00001eb245310 Zea mays HOM05D005389 ORTHO05D008484 0.0e+00 1146.0 886 65.6
AUR62032098 Chenopodium quinoa HOM05D005389 ORTHO05D008484 0.0e+00 1104.0 953 61.5
Mapoly0007s0201 Marchantia polymorpha HOM05D005389 ORTHO05D008484 0.0e+00 1078.2 954 57.2
VMungo1383G0108 Vigna mungo HOM05D005389 ORTHO05D008484 1.2e-303 1046.6 743 68.6
Nn4g22901 Nelumbo nucifera HOM05D005389 ORTHO05D008484 1.0e-297 1026.9 804 66.4
Pp3c17_22750 Physcomitrium patens HOM05D005389 ORTHO05D008484 2.2e-292 1009.2 967 54.1
AagrBONN_evm.TU.Sc2ySwM_368.926 Anthoceros agrestis HOM05D005389 ORTHO05D008484 5.5e-288 994.6 966 54.3
C07p01310 Brassica napus HOM05D005389 ORTHO05D008484 5.2e-278 961.4 717 65.4
TPR.G39126 Trifolium pratense HOM05D005389 ORTHO05D008484 5.0e-273 944.9 713 66.6
unitig_21.g20503 Utricularia gibba HOM05D005389 ORTHO05D008484 2.3e-270 936.0 695 70.9
SMO244G0055 Selaginella moellendorffii HOM05D005389 ORTHO05D008484 3.7e-268 928.7 958 51.5
Dinv35027 Davidia involucrata HOM05D005389 ORTHO05D008484 8.0e-255 884.4 704 65.9
Actinidia36063 Actinidia chinensis HOM05D005389 ORTHO05D008484 3.1e-246 855.9 666 67.4
Os02g0581000 Oryza sativa ssp. japonica HOM05D005389 ORTHO05D008484 8.9e-246 854.4 579 71.2
CARHR075600 Cardamine hirsuta HOM05D005389 ORTHO05D008484 1.5e-240 837.0 684 63.0
CDE04G3020 Ceratophyllum demersum HOM05D005389 ORTHO05D008484 4.7e-223 778.9 971 47.5
Peaxi162Scf00129g00824 Petunia axillaris HOM05D005389 ORTHO05D008484 2.7e-218 763.1 775 54.5
HPP92_017062 Vanilla planifolia HOM05D005389 ORTHO05D008484 7.3e-216 755.0 479 74.9
BcaNung07363 Brassica carinata HOM05D005389 ORTHO05D008484 6.7e-209 731.9 620 61.9
Cpa.g.sc14.89 Carica papaya HOM05D005389 ORTHO05D008484 1.8e-206 723.8 639 58.5
Thhalv10020372m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 6.3e-191 672.2 569 61.7
Atru.chr8.2421 Acer truncatum HOM05D005389 ORTHO05D008484 4.8e-183 646.0 390 77.9
Cfa024795 Carpinus fangiana HOM05D005389 ORTHO05D008484 1.8e-150 537.7 986 36.8
Thhalv10021056m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 1.3e-148 531.6 336 76.8
RcHm_v2.0_Chr7g0219571 Rosa chinensis HOM05D005389 ORTHO05D008484 1.6e-146 524.6 406 64.3
CARHR075590 Cardamine hirsuta HOM05D005389 ORTHO05D008484 6.8e-137 492.7 297 78.8
MCO14G282 Micromonas commoda HOM05D005389 ORTHO05D008484 4.0e-129 466.8 978 33.4
SEGI_37358 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 5.8e-112 409.8 306 63.1
SEGI_27782 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 1.1e-102 379.0 417 51.1
Hma1.2p1_1975F.1_g309760 Hydrangea macrophylla HOM05D005389 ORTHO05D008484 3.7e-82 310.8 222 69.4
RcHm_v2.0_Chr7g0219561 Rosa chinensis HOM05D005389 ORTHO05D008484 3.2e-70 271.2 241 64.7
Peaxi162Scf00129g00823 Petunia axillaris HOM05D005389 ORTHO05D008484 1.5e-56 225.7 143 82.5
unitig_21.g20502 Utricularia gibba HOM05D005389 ORTHO05D008484 1.5e-54 219.2 108 91.7
RcHm_v2.0_Chr7g0219581 Rosa chinensis HOM05D005389 ORTHO05D008484 4.4e-51 207.6 136 72.8
TPR.G17640 Trifolium pratense HOM05D005389 ORTHO05D008484 8.2e-50 203.4 135 82.2
Gorai.010G191700 Gossypium raimondii HOM05D005389 ORTHO05D017049 1.2e-32 146.4 107 69.2
RcHm_v2.0_Chr7g0219531 Rosa chinensis HOM05D005389 ORTHO05D008484 1.7e-26 125.9 141 56.0
SEGI_22900 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 7.8e-24 117.1 67 80.6
Gohir.D11G253466 Gossypium hirsutum HOM05D005389 ORTHO05D017049 5.0e-23 114.4 67 80.6
Gorai.007G272300 Gossypium raimondii HOM05D005389 ORTHO05D017049 5.0e-23 114.4 67 80.6
Gohir.D01G051322 Gossypium hirsutum HOM05D005389 ORTHO05D017049 6.6e-23 114.0 67 80.6
Gohir.D01G103701 Gossypium hirsutum HOM05D005389 ORTHO05D017049 1.1e-22 113.2 67 80.6
Gohir.D07G069451 Gossypium hirsutum HOM05D005389 ORTHO05D017049 1.1e-22 113.2 67 80.6
Gohir.D07G180351 Gossypium hirsutum HOM05D005389 ORTHO05D017049 1.1e-22 113.2 67 80.6
Gorai.008G095000 Gossypium raimondii HOM05D005389 ORTHO05D017049 2.5e-22 112.1 67 79.1
Gorai.009G374100 Gossypium raimondii HOM05D005389 ORTHO05D017049 1.6e-21 109.4 67 79.1
Gohir.D11G223028 Gossypium hirsutum HOM05D005389 ORTHO05D017049 3.6e-21 108.2 67 76.1
TPR.G36209 Trifolium pratense HOM05D005389 ORTHO05D022799 1.0e-20 106.7 80 67.5
Gohir.D06G037575 Gossypium hirsutum HOM05D005389 ORTHO05D022799 1.9e-17 95.9 75 66.7
Gorai.011G193500 Gossypium raimondii HOM05D005389 ORTHO05D022799 1.9e-17 95.9 75 66.7
Gohir.D05G349750 Gossypium hirsutum HOM05D005389 ORTHO05D022799 1.6e-16 92.8 80 62.5
HanXRQChr05g0163421 Helianthus annuus HOM05D005389 ORTHO05D022799 1.6e-16 92.8 78 64.1
PGR031G1437 Punica granatum HOM05D006593 ORTHO05D008512 6.6e-15 87.4 346 23.7
Gohir.D08G162051 Gossypium hirsutum HOM05D005389 ORTHO05D022799 8.6e-15 87.0 75 61.3
RcHm_v2.0_Chr7g0219551 Rosa chinensis HOM05D005389 ORTHO05D008484 1.1e-14 86.7 63 76.2
Actinidia13460 Actinidia chinensis HOM05D001853 ORTHO05D001908 7.3e-14 84.0 59 66.1
Actinidia13461 Actinidia chinensis HOM05D005389 ORTHO05D008484 1.5e-11 76.3 72 52.8
CsaV3_6G045050 Cucumis sativus L. HOM05D006593 ORTHO05D008512 1.5e-11 76.3 348 24.4
FAN28G2735 Fragaria x ananassa HOM05D006593 ORTHO05D008512 5.8e-11 74.3 346 24.9
Gohir.D08G122632 Gossypium hirsutum HOM05D005389 ORTHO05D048184 5.8e-11 74.3 71 54.9
Gorai.001G214100 Gossypium raimondii HOM05D005389 ORTHO05D048184 5.8e-11 74.3 71 54.9
Gohir.D03G042700 Gossypium hirsutum HOM05D006593 ORTHO05D008512 9.8e-11 73.6 343 23.0
MBI06_g07364_MAGBIO Magnolia biondii HOM05D006593 ORTHO05D008512 9.8e-11 73.6 342 26.6
Sed0000560 Sechium edule HOM05D006593 ORTHO05D008512 2.2e-10 72.4 344 25.0
FvH4_1g19740 Fragaria vesca HOM05D006593 ORTHO05D008512 2.9e-10 72.0 346 24.9
FAN19G1905 Fragaria x ananassa HOM05D006593 ORTHO05D008512 2.9e-10 72.0 346 24.9
Gorai.003G043400 Gossypium raimondii HOM05D006593 ORTHO05D008512 8.3e-10 70.5 343 22.7
FAN26G1425 Fragaria x ananassa HOM05D006593 ORTHO05D008512 1.1e-09 70.1 346 24.3
RcHm_v2.0_Chr2g0111321 Rosa chinensis HOM05D006593 ORTHO05D008512 1.9e-09 69.3 365 24.1
Gohir.A02G131300 Gossypium hirsutum HOM05D006593 ORTHO05D008512 3.2e-09 68.6 344 23.0
Gorai.010G120100 Gossypium raimondii HOM05D005389 ORTHO05D047357 3.2e-09 68.6 58 58.6
Mapoly0005s0227 Marchantia polymorpha HOM05D006593 ORTHO05D008512 3.2e-09 68.6 355 24.5
Cfa006891 Carpinus fangiana HOM05D006593 ORTHO05D008512 4.1e-09 68.2 343 24.5
MD15G1313700 Malus domestica HOM05D006593 ORTHO05D008512 4.1e-09 68.2 346 24.9
COL.COLO4_27348 Corchorus olitorius HOM05D006593 ORTHO05D008512 5.4e-09 67.8 343 23.0
PSO017G0451 Papaver somniferum HOM05D006593 ORTHO05D008512 5.4e-09 67.8 384 25.0
Haze_03860 Corylus avellana HOM05D006593 ORTHO05D008512 7.1e-09 67.4 351 25.4
Pp3c8_800 Physcomitrium patens HOM05D006593 ORTHO05D008512 9.2e-09 67.0 179 26.3
AT2G22530 Arabidopsis thaliana HOM05D006593 ORTHO05D008512 3.5e-08 65.1 347 22.5
Gorai.007G302600 Gossypium raimondii HOM05D000602 ORTHO05D010708 6.0e-08 64.3 56 62.5
Lsat_1_v5_gn_3_61401 Lactuca sativa HOM05D006593 ORTHO05D008512 6.0e-08 64.3 359 24.5
Thhalv10000032m.g Eutrema salsugineum HOM05D006593 ORTHO05D008512 7.8e-08 63.9 344 23.5
TWI53G0534 Tripterygium wilfordii HOM05D006593 ORTHO05D008512 1.0e-07 63.5 335 23.0
Gohir.D03G059266 Gossypium hirsutum HOM05D005389 ORTHO05D047261 1.3e-07 63.2 39 84.6
Gorai.003G063200 Gossypium raimondii HOM05D005389 ORTHO05D047261 1.3e-07 63.2 39 84.6
Lj2g0020402 Lotus japonicus HOM05D006593 ORTHO05D008512 2.3e-07 62.4 322 25.2
Medtr5g032210 Medicago truncatula HOM05D006593 ORTHO05D008512 3.0e-07 62.0 326 23.9
ATR0665G270 Amborella trichopoda HOM05D006593 ORTHO05D008512 3.9e-07 61.6 160 28.8
Os02g0781600 Oryza sativa ssp. japonica HOM05D006593 ORTHO05D008512 3.9e-07 61.6 350 23.7
EL10Ac6g15212 Beta vulgaris HOM05D006593 ORTHO05D008512 5.1e-07 61.2 328 25.6
Rhsim10G0172300 Rhododendron simsii HOM05D006593 ORTHO05D008512 5.1e-07 61.2 344 23.8
Lalb_Chr05g0216291 Lupinus albus HOM05D006593 ORTHO05D008512 6.6e-07 60.8 354 23.7
AL4G12066 Arabidopsis lyrata HOM05D006593 ORTHO05D008512 8.6e-07 60.5 343 22.2
CSS0021282 Camellia sinensis var. sinensis HOM05D006593 ORTHO05D008512 8.6e-07 60.5 331 24.8
Sc13g0008160 Simmondsia chinensis HOM05D004630 ORTHO05D005727 1.1e-06 60.1 333 24.3
Ah.02g123650 Amaranthus hybridus HOM05D006593 ORTHO05D008512 1.5e-06 59.7 325 24.3
Cpa.g.sc55.33 Carica papaya HOM05D006593 ORTHO05D008512 1.9e-06 59.3 352 24.1
CANSAT11G0088 Cannabis sativa HOM05D004630 ORTHO05D005727 3.3e-06 58.5 331 22.7
PSO170G1479 Papaver somniferum HOM05D006593 ORTHO05D008512 5.6e-06 57.8 358 22.1
vmacro13002 Vaccinium macrocarpon HOM05D006593 ORTHO05D008512 5.6e-06 57.8 320 23.8
MCO01G549 Micromonas commoda HOM05D004630 ORTHO05D005727 7.3e-06 57.4 425 19.8


User provided reference genes

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