Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold135G34803 Striga asiatica HOM05D007214 ORTHO05D008907 5.2e-127 458.0 275 100.0
SGA_v2.0_scaffold205G41734 Striga asiatica HOM05D007214 ORTHO05D008907 3.0e-34 149.8 210 63.3
SalBow1G8362 Salvia bowleyana HOM05D007214 ORTHO05D008907 8.2e-32 141.7 244 52.9
Nitab4.5_0001239g0030 Nicotiana tabacum HOM05D007214 ORTHO05D008907 2.6e-30 136.7 262 38.5
Migut.H00870 Erythranthe guttata HOM05D007214 ORTHO05D008907 7.7e-30 135.2 220 56.4
FAN09G3859 Fragaria x ananassa HOM05D007214 ORTHO05D008907 1.0e-29 134.8 226 38.9
CiPaw.04G066400 Carya illinoinensis HOM05D007214 ORTHO05D008907 1.4e-28 131.0 225 39.6
AUR62018331 Chenopodium quinoa HOM05D007214 ORTHO05D008907 9.4e-28 128.3 222 42.8
PSO063G2579 Papaver somniferum HOM05D007214 ORTHO05D008907 3.0e-26 123.2 222 36.5
CANSAT64G0721 Cannabis sativa HOM05D007214 ORTHO05D008907 5.1e-26 122.5 218 37.6
Ciclev10012639m.g Citrus clementina HOM05D007214 ORTHO05D008907 5.1e-26 122.5 228 39.0
Sopen02g032170 Solanum pennellii HOM05D007214 ORTHO05D008907 1.5e-25 120.9 223 40.8
Potri.017G074100 Populus trichocarpa HOM05D007214 ORTHO05D008907 2.5e-25 120.2 229 35.8
Glyma.04G176300 Glycine max HOM05D007214 ORTHO05D008907 3.3e-25 119.8 220 37.7
CSS0043780 Camellia sinensis var. sinensis HOM05D007214 ORTHO05D008907 4.8e-24 115.9 222 39.2
CARHR292610 Cardamine hirsuta HOM05D007214 ORTHO05D008907 8.2e-24 115.2 221 45.2
Solyc02g087420.3 Solanum lycopersicum HOM05D007214 ORTHO05D008907 1.4e-23 114.4 223 39.0
AUR62030556 Chenopodium quinoa HOM05D007214 ORTHO05D008907 4.1e-23 112.8 220 34.1
Glyma.06G189000 Glycine max HOM05D007214 ORTHO05D008907 5.3e-23 112.5 227 34.4
Duzib187G0634 Durio zibethinus HOM05D007214 ORTHO05D008907 9.1e-23 111.7 222 43.7
Potri.001G350100 Populus trichocarpa HOM05D007214 ORTHO05D008907 9.1e-23 111.7 220 35.0
FAN14G2712 Fragaria x ananassa HOM05D007214 ORTHO05D008907 2.6e-22 110.2 226 47.3
CSS0027558 Camellia sinensis var. sinensis HOM05D007214 ORTHO05D008907 3.4e-22 109.8 222 38.7
Nitab4.5_0002265g0100 Nicotiana tabacum HOM05D007214 ORTHO05D008907 4.5e-22 109.4 262 44.3
FAN02G1556 Fragaria x ananassa HOM05D007214 ORTHO05D008907 5.9e-22 109.0 225 36.0
Oeu060587.1 Olea europaea HOM05D007214 ORTHO05D008907 1.0e-21 108.2 123 53.7
arahy.Tifrunner.gnm1.ann1.X6PLX1 Arachis hypogaea HOM05D007214 ORTHO05D008907 1.3e-21 107.8 227 37.9
LjContig00155g0009682 Lotus japonicus HOM05D007214 ORTHO05D008907 1.7e-21 107.5 219 34.7
Aqoxy3G00863 Aquilegia oxysepala HOM05D007214 ORTHO05D008907 2.2e-21 107.1 230 36.1
Dinv33685 Davidia involucrata HOM05D007214 ORTHO05D008907 2.2e-21 107.1 233 46.8
Nn4g22956 Nelumbo nucifera HOM05D007214 ORTHO05D008907 2.2e-21 107.1 225 41.3
arahy.Tifrunner.gnm1.ann1.QRE12D Arachis hypogaea HOM05D007214 ORTHO05D008907 2.9e-21 106.7 227 37.9
Peaxi162Scf00129g00734 Petunia axillaris HOM05D007214 ORTHO05D008907 2.9e-21 106.7 204 37.7
Lalb_Chr10g0093331 Lupinus albus HOM05D007214 ORTHO05D008907 1.1e-20 104.8 225 33.8
Medtr7g034275 Medicago truncatula HOM05D007214 ORTHO05D008907 1.1e-20 104.8 229 39.3
Manes.17G117200 Manihot esculenta HOM05D007214 ORTHO05D008907 1.4e-20 104.4 230 34.3
Zm00001eb280040 Zea mays HOM05D007214 ORTHO05D008907 3.2e-20 103.2 221 32.1
TPR.G30823 Trifolium pratense HOM05D007214 ORTHO05D008907 5.5e-20 102.4 220 33.6
AT3G28370 Arabidopsis thaliana HOM05D007214 ORTHO05D008907 7.2e-20 102.1 222 44.6
Phvul.008G153000 Phaseolus vulgaris HOM05D007214 ORTHO05D008907 7.9e-19 98.6 220 33.6
A06p40570 Brassica napus HOM05D007214 ORTHO05D008907 5.1e-18 95.9 223 39.9
AL5G17980 Arabidopsis lyrata HOM05D007214 ORTHO05D008907 1.1e-17 94.7 222 43.7
BolC7t44250H Brassica oleracea HOM05D007214 ORTHO05D008907 1.5e-17 94.4 228 39.9
A06p40600 Brassica napus HOM05D007214 ORTHO05D008907 2.6e-17 93.6 224 40.6
BraA06t26979Z Brassica rapa HOM05D007214 ORTHO05D008907 2.6e-17 93.6 223 40.8
Sabra16G0229500 Salix brachista HOM05D007214 ORTHO05D008907 2.6e-17 93.6 215 32.1
Sp2g17170 Schrenkiella parvula HOM05D007214 ORTHO05D008907 1.3e-16 91.3 220 37.7
BcaC06g33744 Brassica carinata HOM05D007214 ORTHO05D008907 1.7e-16 90.9 218 41.3
Cc07_g02800 Coffea canephora HOM05D007214 ORTHO05D008907 2.2e-16 90.5 226 44.7
CAN.G206.82 Capsicum annuum HOM05D007214 ORTHO05D008907 2.8e-16 90.1 219 42.0
C07p37400 Brassica napus HOM05D007214 ORTHO05D008907 3.7e-16 89.7 223 40.8
HPP92_010494 Vanilla planifolia HOM05D007214 ORTHO05D008907 4.8e-16 89.4 226 30.5
Cpa.g.sc14.68 Carica papaya HOM05D007214 ORTHO05D008907 6.3e-16 89.0 131 42.0
RcHm_v2.0_Chr2g0169771 Rosa chinensis HOM05D007214 ORTHO05D008907 1.1e-15 88.2 226 36.3
Sc11g0006840 Simmondsia chinensis HOM05D007214 ORTHO05D008907 1.8e-15 87.4 123 42.3
TWI12G0421 Tripterygium wilfordii HOM05D007214 ORTHO05D008907 1.8e-15 87.4 220 42.7
Gorai.001G258300 Gossypium raimondii HOM05D007214 ORTHO05D008907 2.4e-15 87.0 227 43.2
Dinv35004 Davidia involucrata HOM05D007214 ORTHO05D008907 7.0e-15 85.5 196 49.0
Ca_08472_v3 Cicer arietinum L. HOM05D007214 ORTHO05D008907 1.2e-14 84.7 222 31.1
RhsimUnG0169100 Rhododendron simsii HOM05D007214 ORTHO05D008907 1.2e-14 84.7 222 40.1
MD09G1042000 Malus domestica HOM05D007214 ORTHO05D008907 3.5e-14 83.2 228 42.5
Psat3g038600 Pisum sativum HOM05D007214 ORTHO05D008907 2.9e-13 80.1 140 49.3
Ah.12g065280 Amaranthus hybridus HOM05D007214 ORTHO05D008907 5.0e-13 79.3 215 30.7
MBI15_g38192_MAGBIO Magnolia biondii HOM05D007214 ORTHO05D008907 5.0e-13 79.3 112 42.9
TAR629G0039 Trochodendron aralioides HOM05D000068 ORTHO05D008907 1.1e-12 78.2 74 55.4
Eucgr.J02159 Eucalyptus grandis HOM05D007214 ORTHO05D008907 1.5e-12 77.8 217 28.6
FvH4_6g49740 Fragaria vesca HOM05D007214 ORTHO05D008907 7.2e-12 75.5 228 40.4
DCAR_011179 Daucus carota HOM05D007214 ORTHO05D008907 9.4e-12 75.1 73 56.2
Lsat_1_v5_gn_4_180400 Lactuca sativa HOM05D007214 ORTHO05D008907 2.1e-11 73.9 208 41.8
Prupe.3G275800 Prunus persica HOM05D007214 ORTHO05D008907 2.7e-11 73.6 228 36.0
Nitab4.5_0001239g0020 Nicotiana tabacum HOM05D005549 ORTHO05D006771 6.1e-11 72.4 213 33.8
ECA232G1410 Erigeron canadensis HOM05D007214 ORTHO05D008907 4.0e-10 69.7 225 39.1
Sabra07G0063000 Salix brachista HOM05D007214 ORTHO05D008907 6.7e-10 68.9 124 38.7
QL02p079285 Quercus lobata HOM05D007214 ORTHO05D008907 1.5e-09 67.8 236 37.7
Sed0019253 Sechium edule HOM05D007214 ORTHO05D008907 1.5e-09 67.8 232 40.1
Thecc.04G070100 Theobroma cacao HOM05D007214 ORTHO05D008907 2.0e-09 67.4 197 47.2
Gohir.D07G223900 Gossypium hirsutum HOM05D007214 ORTHO05D008907 5.7e-09 65.9 132 55.3
Gohir.A07G216951 Gossypium hirsutum HOM05D007214 ORTHO05D008907 1.3e-08 64.7 227 41.4
TAR629G1667 Trochodendron aralioides HOM05D000068 ORTHO05D000084 2.2e-08 63.9 192 35.9
BcaC06g30923 Brassica carinata HOM05D007214 ORTHO05D008907 3.7e-08 63.2 222 37.8
Manes.17G117300 Manihot esculenta HOM05D007214 ORTHO05D008907 3.7e-08 63.2 120 35.0
THA.LOC104805424 Tarenaya hassleriana HOM05D007214 ORTHO05D008907 3.7e-08 63.2 220 39.5
Carub.0005s0686 Capsella rubella HOM05D007214 ORTHO05D008907 8.2e-08 62.0 216 31.9
Atru.chr8.2432 Acer truncatum HOM05D007214 ORTHO05D008907 1.1e-07 61.6 120 35.0
MELO3C030968.2 Cucumis melo HOM05D007214 ORTHO05D008907 2.4e-07 60.5 77 46.8
Thhalv10004882m.g Eutrema salsugineum HOM05D007214 ORTHO05D008907 2.4e-07 60.5 222 36.5
Sabra17G0065100 Salix brachista HOM05D007214 ORTHO05D008907 3.1e-07 60.1 93 38.7
MSTRG.23970 Avicennia marina HOM05D007214 ORTHO05D008907 4.1e-07 59.7 46 69.6
CsaV3_3G041890 Cucumis sativus L. HOM05D062301 ORTHO05D008907 2.7e-06 57.0 225 33.3
GSVIVG01032574001 Vitis vinifera HOM05D007214 ORTHO05D008907 5.9e-06 55.8 46 58.7


User provided reference genes

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