Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold134G34733 Striga asiatica HOM05D001733 ORTHO05D010215 2.7e-58 228.4 110 100.0
SGA_v2.0_scaffold17G08081 Striga asiatica HOM05D009707 ORTHO05D010215 5.8e-13 77.8 36 88.9
SGA_v2.0_scaffold45G17016 Striga asiatica HOM05D009707 ORTHO05D010215 1.7e-12 76.3 36 88.9
SGA_v2.0_scaffold148G36410 Striga asiatica HOM05D009707 ORTHO05D010215 2.4e-11 72.4 36 86.1
SGA_v2.0_scaffold167G38423 Striga asiatica HOM05D008147 ORTHO05D010215 2.4e-11 72.4 36 86.1
SGA_v2.0_scaffold279G46805 Striga asiatica HOM05D009707 ORTHO05D010215 2.4e-11 72.4 36 86.1
SGA_v2.0_scaffold17G08121 Striga asiatica HOM05D008147 ORTHO05D010215 7.1e-11 70.9 36 83.3
Lj4A253T37 Lonicera japonica HOM05D001733 ORTHO05D001882 5.1e-09 64.7 45 68.9
Glyma.14G210700 Glycine max HOM05D001733 ORTHO05D001882 6.6e-09 64.3 52 65.4
SalBow5G0948 Salvia bowleyana HOM05D001733 ORTHO05D001882 6.6e-09 64.3 54 63.0
SalBow5G5318 Salvia bowleyana HOM05D001733 ORTHO05D001882 6.6e-09 64.3 54 63.0
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 6.6e-09 64.3 54 63.0
Migut.K00740 Erythranthe guttata HOM05D001733 ORTHO05D001882 8.7e-09 63.9 54 61.1
LjContig00141g0019465 Lotus japonicus HOM05D001733 ORTHO05D001882 8.7e-09 63.9 43 72.1
Medtr5g077000 Medicago truncatula HOM05D001733 ORTHO05D001882 8.7e-09 63.9 52 63.5
Glyma.02G241100 Glycine max HOM05D001733 ORTHO05D001882 1.1e-08 63.5 43 72.1
Oeu039701.1 Olea europaea HOM05D001733 ORTHO05D001882 1.1e-08 63.5 54 63.0
Lsat_1_v5_gn_3_67140 Lactuca sativa HOM05D001733 ORTHO05D001882 1.5e-08 63.2 69 52.2
Lalb_Chr18g0053731 Lupinus albus HOM05D001733 ORTHO05D001882 1.5e-08 63.2 43 69.8
Medtr3g064490 Medicago truncatula HOM05D001733 ORTHO05D001882 1.5e-08 63.2 52 63.5
Psat2g043240 Pisum sativum HOM05D001733 ORTHO05D001882 1.5e-08 63.2 43 72.1
SGA_v2.0_scaffold121G33123 Striga asiatica HOM05D009707 ORTHO05D010215 1.5e-08 63.2 38 63.2
CSS0033291 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 1.9e-08 62.8 45 68.9
DCAR_014145 Daucus carota HOM05D001733 ORTHO05D001882 3.3e-08 62.0 54 59.3
HanXRQChr16g0532261 Helianthus annuus HOM05D001733 ORTHO05D001882 3.3e-08 62.0 69 50.7
Lj2A512T37 Lonicera japonica HOM05D001733 ORTHO05D001882 3.3e-08 62.0 54 57.4
VMungo0647G0783 Vigna mungo HOM05D001733 ORTHO05D001882 3.3e-08 62.0 52 63.5
arahy.Tifrunner.gnm1.ann1.4MRL1E Arachis hypogaea HOM05D001733 ORTHO05D001882 4.3e-08 61.6 43 69.8
arahy.Tifrunner.gnm1.ann1.F91WU6 Arachis hypogaea HOM05D001733 ORTHO05D001882 4.3e-08 61.6 43 69.8
Ciclev10011657m.g Citrus clementina HOM05D001733 ORTHO05D001882 4.3e-08 61.6 54 59.3
Dinv19076 Davidia involucrata HOM05D001733 ORTHO05D001882 4.3e-08 61.6 45 64.4
Duzib138G1439 Durio zibethinus HOM05D001733 ORTHO05D001882 4.3e-08 61.6 54 57.4
Psat0s3165g0080 Pisum sativum HOM05D001733 ORTHO05D001882 4.3e-08 61.6 52 61.5
Rhsim10G0185000 Rhododendron simsii HOM05D001733 ORTHO05D001882 4.3e-08 61.6 45 64.4
TPR.G18898 Trifolium pratense HOM05D001733 ORTHO05D001882 4.3e-08 61.6 52 61.5
Thecc.04G000500 Theobroma cacao HOM05D001733 ORTHO05D001882 5.6e-08 61.2 45 62.2
VMungo0251G3345 Vigna mungo HOM05D001733 ORTHO05D001882 5.6e-08 61.2 49 65.3
ClCG05G011350 Citrullus lanatus HOM05D001733 ORTHO05D001882 7.3e-08 60.8 54 59.3
COL.COLO4_19771 Corchorus olitorius HOM05D001733 ORTHO05D001882 7.3e-08 60.8 71 47.9
HanXRQChr15g0482381 Helianthus annuus HOM05D001733 ORTHO05D001882 7.3e-08 60.8 45 64.4
Phvul.008G240600 Phaseolus vulgaris HOM05D001733 ORTHO05D001882 7.3e-08 60.8 52 61.5
Psat5g255000 Pisum sativum HOM05D001733 ORTHO05D001882 7.3e-08 60.8 43 69.8
PGR042G3423 Punica granatum HOM05D001733 ORTHO05D001882 7.3e-08 60.8 54 59.3
Sabra15G0083200 Salix brachista HOM05D001733 ORTHO05D001882 7.3e-08 60.8 45 68.9
THA.LOC104820859 Tarenaya hassleriana HOM05D001733 ORTHO05D001882 7.3e-08 60.8 54 57.4
MSTRG.3676 Avicennia marina HOM05D001733 ORTHO05D001882 9.6e-08 60.5 51 58.8
Gohir.D08G048800 Gossypium hirsutum HOM05D001733 ORTHO05D001882 9.6e-08 60.5 71 49.3
Gorai.004G048300 Gossypium raimondii HOM05D001733 ORTHO05D001882 9.6e-08 60.5 71 49.3
Lalb_Chr15g0085251 Lupinus albus HOM05D001733 ORTHO05D001882 9.6e-08 60.5 43 67.4
PSO782G3656 Papaver somniferum HOM05D001733 ORTHO05D001882 9.6e-08 60.5 54 59.3
GSVIVG01026563001 Vitis vinifera HOM05D001733 ORTHO05D001882 9.6e-08 60.5 54 57.4
Ca_17067_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 1.3e-07 60.1 51 60.8
PSO063G7403 Papaver somniferum HOM05D001733 ORTHO05D001882 1.3e-07 60.1 54 57.4
Hund06872 Selenicereus undatus HOM05D001733 ORTHO05D001882 1.3e-07 60.1 54 59.3
SGA_v2.0_scaffold27G11629 Striga asiatica HOM05D009707 ORTHO05D010215 1.3e-07 60.1 36 63.9
SGA_v2.0_scaffold68G22817 Striga asiatica HOM05D009707 ORTHO05D010215 1.3e-07 60.1 36 66.7
unitig_748.g7021 Utricularia gibba HOM05D001733 ORTHO05D001882 1.3e-07 60.1 45 66.7
Actinidia28784 Actinidia chinensis HOM05D001733 ORTHO05D001882 1.6e-07 59.7 54 57.4
Sp3g02280 Schrenkiella parvula HOM05D001733 ORTHO05D001882 1.6e-07 59.7 45 62.2
Actinidia35712 Actinidia chinensis HOM05D001733 ORTHO05D001882 2.1e-07 59.3 54 55.6
Dinv28238 Davidia involucrata HOM05D001733 ORTHO05D001882 2.1e-07 59.3 54 55.6
Glyma.11G210989 Glycine max HOM05D001733 ORTHO05D001882 2.1e-07 59.3 34 76.5
Gohir.A11G169600 Gossypium hirsutum HOM05D001733 ORTHO05D001882 2.1e-07 59.3 45 62.2
Gohir.D11G175800 Gossypium hirsutum HOM05D001733 ORTHO05D001882 2.1e-07 59.3 45 62.2
Potri.017G144700 Populus trichocarpa HOM05D001733 ORTHO05D001882 2.1e-07 59.3 45 66.7
Sabra17G0121200 Salix brachista HOM05D001733 ORTHO05D001882 2.1e-07 59.3 45 66.7
Sed0017083 Sechium edule HOM05D001733 ORTHO05D001882 2.1e-07 59.3 37 75.7
AT5G17310 Arabidopsis thaliana HOM05D001733 ORTHO05D001882 2.8e-07 58.9 54 55.6
BcaC05g29872 Brassica carinata HOM05D001733 ORTHO05D001882 2.8e-07 58.9 45 62.2
BcaC05g30312 Brassica carinata HOM05D001733 ORTHO05D001882 2.8e-07 58.9 45 62.2
A03p08270 Brassica napus HOM05D001733 ORTHO05D001882 2.8e-07 58.9 45 62.2
BolC5t35024H Brassica oleracea HOM05D001733 ORTHO05D001882 2.8e-07 58.9 45 62.2
BraA03t10147Z Brassica rapa HOM05D001733 ORTHO05D001882 2.8e-07 58.9 45 62.2
BraA05t23131Z Brassica rapa HOM05D001733 ORTHO05D001882 2.8e-07 58.9 45 62.2
Carub.0006s1550 Capsella rubella HOM05D001733 ORTHO05D001882 2.8e-07 58.9 54 55.6
Haze_14315 Corylus avellana HOM05D001733 ORTHO05D001882 2.8e-07 58.9 74 50.0
Thhalv10013449m.g Eutrema salsugineum HOM05D001733 ORTHO05D001882 2.8e-07 58.9 45 62.2
Sabra04G0049300 Salix brachista HOM05D001733 ORTHO05D010215 2.8e-07 58.9 39 69.2
Oeu012522.2 Olea europaea HOM05D001733 ORTHO05D001882 3.6e-07 58.5 35 77.1
PGSC0003DMG401013333 Solanum tuberosum HOM05D001733 ORTHO05D001882 3.6e-07 58.5 69 49.3
C03p09620 Brassica napus HOM05D001733 ORTHO05D001882 4.8e-07 58.2 45 62.2
Gorai.007G188400 Gossypium raimondii HOM05D001733 ORTHO05D001882 4.8e-07 58.2 45 60.0
Nn3g18506 Nelumbo nucifera HOM05D001733 ORTHO05D001882 4.8e-07 58.2 54 57.4
PGR004G2261 Punica granatum HOM05D001733 ORTHO05D001882 4.8e-07 58.2 54 55.6
TWI77G0925 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 4.8e-07 58.2 54 55.6
Atru.chr1.2162 Acer truncatum HOM05D001733 ORTHO05D001882 6.2e-07 57.8 54 57.4
Actinidia40419 Actinidia chinensis HOM05D001733 ORTHO05D001882 6.2e-07 57.8 54 55.6
CiPaw.04G049000 Carya illinoinensis HOM05D001733 ORTHO05D001882 6.2e-07 57.8 54 55.6
Cc07_g12830 Coffea canephora HOM05D001733 ORTHO05D001882 6.2e-07 57.8 54 57.4
CsaV3_3G021110 Cucumis sativus L. HOM05D001733 ORTHO05D001882 6.2e-07 57.8 54 57.4
Eucgr.F02905 Eucalyptus grandis HOM05D001733 ORTHO05D001882 6.2e-07 57.8 45 60.0
Nn4g24687 Nelumbo nucifera HOM05D001733 ORTHO05D001882 6.2e-07 57.8 54 57.4
Rhsim08G0020900 Rhododendron simsii HOM05D001733 ORTHO05D001882 6.2e-07 57.8 54 55.6
THA.LOC104802909 Tarenaya hassleriana HOM05D001733 ORTHO05D001882 6.2e-07 57.8 45 62.2
TWI53G0883 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 6.2e-07 57.8 54 55.6
vmacro20474 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 6.2e-07 57.8 56 50.0
A05p43950 Brassica napus HOM05D001733 ORTHO05D001882 8.1e-07 57.4 45 60.0
CARHR077270 Cardamine hirsuta HOM05D001733 ORTHO05D001882 8.1e-07 57.4 45 60.0
DCAR_003411 Daucus carota HOM05D001733 ORTHO05D001882 8.1e-07 57.4 60 48.3
Thhalv10020665m.g Eutrema salsugineum HOM05D001733 ORTHO05D001882 8.1e-07 57.4 45 60.0
Gohir.A08G038600 Gossypium hirsutum HOM05D001733 ORTHO05D001882 8.1e-07 57.4 71 47.9
Manes.01G123000 Manihot esculenta HOM05D001733 ORTHO05D001882 8.1e-07 57.4 45 62.2
Os09g0553200 Oryza sativa ssp. japonica HOM05D001733 ORTHO05D001882 8.1e-07 57.4 54 53.7
Peaxi162Scf00063g00616 Petunia axillaris HOM05D001733 ORTHO05D001882 8.1e-07 57.4 54 55.6
Potri.004G074400 Populus trichocarpa HOM05D001733 ORTHO05D001882 8.1e-07 57.4 45 64.4
TAR622G0535 Trochodendron aralioides HOM05D001733 ORTHO05D001882 8.1e-07 57.4 45 60.0
MBI08_g09800_MAGBIO Magnolia biondii HOM05D001733 ORTHO05D001882 1.1e-06 57.0 54 55.6
Manes.02G080600 Manihot esculenta HOM05D001733 ORTHO05D001882 1.1e-06 57.0 54 55.6
QL02p064794 Quercus lobata HOM05D001733 ORTHO05D001882 1.1e-06 57.0 37 70.3
Sc09g0004470 Simmondsia chinensis HOM05D001733 ORTHO05D001882 1.1e-06 57.0 54 55.6
vmacro18513 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 1.1e-06 57.0 54 55.6
Zm00001eb230070 Zea mays HOM05D001733 ORTHO05D001882 1.1e-06 57.0 37 67.6
Aqoxy340s001 Aquilegia oxysepala HOM05D001733 ORTHO05D001882 1.4e-06 56.6 50 54.0
AL6G28390 Arabidopsis lyrata HOM05D001733 ORTHO05D001882 1.4e-06 56.6 54 51.9
CAN.G449.11 Capsicum annuum HOM05D001733 ORTHO05D001882 1.4e-06 56.6 45 62.2
Os02g0117700 Oryza sativa ssp. japonica HOM05D001733 ORTHO05D001882 1.4e-06 56.6 54 55.6
Sp6g26920 Schrenkiella parvula HOM05D001733 ORTHO05D001882 1.4e-06 56.6 45 60.0
Hund22202 Selenicereus undatus HOM05D001733 ORTHO05D001882 1.4e-06 56.6 61 49.2
Solyc11g011960.2 Solanum lycopersicum HOM05D001733 ORTHO05D001882 1.4e-06 56.6 69 49.3
Sopen11g006770 Solanum pennellii HOM05D001733 ORTHO05D001882 1.4e-06 56.6 69 49.3
Cpa.g.sc178.21 Carica papaya HOM05D001733 ORTHO05D001882 1.8e-06 56.2 54 53.7
Solyc05g054060.3 Solanum lycopersicum HOM05D001733 ORTHO05D001882 1.8e-06 56.2 45 62.2
HPP92_003187 Vanilla planifolia HOM05D001733 ORTHO05D001882 1.8e-06 56.2 54 55.6
Zm00001eb104400 Zea mays HOM05D001733 ORTHO05D001882 1.8e-06 56.2 54 53.7
Aa31LG11G12370 Aethionema arabicum HOM05D001733 ORTHO05D001882 2.4e-06 55.8 54 51.9
Ah.04g163000 Amaranthus hybridus HOM05D001733 ORTHO05D001882 2.4e-06 55.8 37 67.6
Aqoxy3G04124 Aquilegia oxysepala HOM05D001733 ORTHO05D001882 2.4e-06 55.8 54 50.0
AL3G12860 Arabidopsis lyrata HOM05D001733 ORTHO05D001882 2.4e-06 55.8 54 51.9
Cfa007757 Carpinus fangiana HOM05D001733 ORTHO05D001882 2.4e-06 55.8 44 65.9
Nitab4.5_0000143g0530 Nicotiana tabacum HOM05D001733 ORTHO05D001882 2.4e-06 55.8 49 59.2
Nitab4.5_0001198g0330 Nicotiana tabacum HOM05D001733 ORTHO05D001882 2.4e-06 55.8 49 59.2
Zm00001eb320800 Zea mays HOM05D001733 ORTHO05D001882 2.4e-06 55.8 54 53.7
Prupe.3G015000 Prunus persica HOM05D001733 ORTHO05D001882 3.1e-06 55.5 49 59.2
CiPaw.03G076600 Carya illinoinensis HOM05D001733 ORTHO05D001882 4.0e-06 55.1 69 49.3
MD09G1278300 Malus domestica HOM05D001733 ORTHO05D001882 4.0e-06 55.1 49 61.2
ECA246G3382 Erigeron canadensis HOM05D001733 ORTHO05D001882 5.3e-06 54.7 69 46.4
AUR62003403 Chenopodium quinoa HOM05D001733 ORTHO05D001882 6.9e-06 54.3 54 50.0
Sc20g0000780 Simmondsia chinensis HOM05D001733 ORTHO05D001882 6.9e-06 54.3 54 50.0
Sopen05g032550 Solanum pennellii HOM05D001733 ORTHO05D001882 6.9e-06 54.3 37 67.6
EL10Ac4g08931 Beta vulgaris HOM05D001733 ORTHO05D001882 9.0e-06 53.9 49 53.1
CANSAT54G2999 Cannabis sativa HOM05D001733 ORTHO05D001882 9.0e-06 53.9 40 65.0
AUR62004774 Chenopodium quinoa HOM05D001733 ORTHO05D001882 9.0e-06 53.9 35 62.9
RcHm_v2.0_Chr3g0488851 Rosa chinensis HOM05D001733 ORTHO05D001882 9.0e-06 53.9 54 51.9
Sed0007038 Sechium edule HOM05D001733 ORTHO05D001882 9.0e-06 53.9 54 53.7


User provided reference genes

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