Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold133G34600 Striga asiatica HOM05D001775 ORTHO05D006205 4.0e-98 361.3 169 100.0
MSTRG.24916 Avicennia marina HOM05D001775 ORTHO05D006205 6.9e-74 280.8 169 75.1
SalBow7G0166 Salvia bowleyana HOM05D001775 ORTHO05D006205 1.0e-69 266.9 169 69.8
Migut.C00377 Erythranthe guttata HOM05D001775 ORTHO05D006205 1.0e-64 250.4 169 68.0
MD06G1005500 Malus domestica HOM05D001775 ORTHO05D006205 2.9e-64 248.8 169 66.3
Ciclev10002700m.g Citrus clementina HOM05D001775 ORTHO05D006205 9.4e-63 243.8 169 66.9
CiPaw.07G134900 Carya illinoinensis HOM05D001775 ORTHO05D006205 1.6e-62 243.0 169 65.7
unitig_0.g2075 Utricularia gibba HOM05D001775 ORTHO05D006205 2.1e-62 242.7 191 61.8
Oeu016871.1 Olea europaea HOM05D001775 ORTHO05D006205 4.7e-62 241.5 171 66.7
Cc10_g00340 Coffea canephora HOM05D001775 ORTHO05D006205 6.1e-62 241.1 169 65.1
Oeu019572.1 Olea europaea HOM05D001775 ORTHO05D006205 8.0e-62 240.7 171 65.5
Hma1.2p1_0612F.1_g189000 Hydrangea macrophylla HOM05D001775 ORTHO05D006205 1.0e-61 240.4 170 67.6
QL02p015365 Quercus lobata HOM05D001775 ORTHO05D006205 6.7e-61 237.7 168 64.9
QL02p015396 Quercus lobata HOM05D001775 ORTHO05D006205 6.7e-61 237.7 168 64.9
CSS0024195 Camellia sinensis var. sinensis HOM05D001775 ORTHO05D006205 8.8e-61 237.3 169 64.5
Manes.18G002900 Manihot esculenta HOM05D001775 ORTHO05D006205 2.0e-60 236.1 169 66.9
Cfa014124 Carpinus fangiana HOM05D001775 ORTHO05D006205 4.4e-60 235.0 169 63.9
GSVIVG01013411001 Vitis vinifera HOM05D001775 ORTHO05D006205 4.4e-60 235.0 169 63.9
Actinidia15517 Actinidia chinensis HOM05D001775 ORTHO05D006205 9.7e-60 233.8 168 63.7
Prupe.5G006800 Prunus persica HOM05D001775 ORTHO05D006205 9.7e-60 233.8 164 64.6
Eucgr.F01803 Eucalyptus grandis HOM05D001775 ORTHO05D006205 1.1e-58 230.3 169 62.7
FAN04G1208 Fragaria x ananassa HOM05D001775 ORTHO05D006205 1.1e-58 230.3 169 62.1
Ca_15392_v3 Cicer arietinum L. HOM05D001775 ORTHO05D006205 1.4e-58 229.9 169 63.3
FAN08G0076 Fragaria x ananassa HOM05D001775 ORTHO05D006205 2.4e-58 229.2 169 61.5
Hund05085 Selenicereus undatus HOM05D001775 ORTHO05D006205 3.1e-58 228.8 169 62.7
ClCG08G009240 Citrullus lanatus HOM05D001775 ORTHO05D006205 4.1e-58 228.4 169 60.9
TPR.G38180 Trifolium pratense HOM05D001775 ORTHO05D006205 4.1e-58 228.4 179 58.7
FvH4_5g25920 Fragaria vesca HOM05D001775 ORTHO05D006205 5.3e-58 228.0 169 60.9
FAN13G2435 Fragaria x ananassa HOM05D001775 ORTHO05D006205 5.3e-58 228.0 169 60.9
Glyma.06G015300 Glycine max HOM05D001775 ORTHO05D006205 1.2e-57 226.9 169 63.9
RcHm_v2.0_Chr7g0216421 Rosa chinensis HOM05D001775 ORTHO05D006205 1.2e-57 226.9 169 61.5
Sed0015170 Sechium edule HOM05D001775 ORTHO05D006205 3.5e-57 225.3 169 60.9
arahy.Tifrunner.gnm1.ann1.62LGBX Arachis hypogaea HOM05D001775 ORTHO05D006205 4.5e-57 224.9 169 60.9
TWI12G0153 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 5.9e-57 224.6 169 61.5
Haze_22846 Corylus avellana HOM05D001775 ORTHO05D006205 7.7e-57 224.2 173 60.7
DCAR_016792 Daucus carota HOM05D001775 ORTHO05D006205 7.7e-57 224.2 169 61.5
Thecc.08G064000 Theobroma cacao HOM05D001775 ORTHO05D006205 7.7e-57 224.2 169 62.1
Phvul.009G007300 Phaseolus vulgaris HOM05D001775 ORTHO05D006205 1.3e-56 223.4 169 61.5
arahy.Tifrunner.gnm1.ann1.NA36AX Arachis hypogaea HOM05D001775 ORTHO05D006205 3.8e-56 221.9 169 60.4
PSO675G2258 Papaver somniferum HOM05D001775 ORTHO05D006205 3.8e-56 221.9 169 60.9
TAR628G0191 Trochodendron aralioides HOM05D001775 ORTHO05D006205 1.5e-55 219.9 169 60.9
MBI08_g29079_MAGBIO Magnolia biondii HOM05D001775 ORTHO05D006205 5.5e-55 218.0 171 62.6
Lalb_Chr11g0061401 Lupinus albus HOM05D001775 ORTHO05D006205 9.4e-55 217.2 169 59.2
AUR62024107 Chenopodium quinoa HOM05D001775 ORTHO05D006205 1.2e-54 216.9 171 60.2
AUR62035157 Chenopodium quinoa HOM05D001775 ORTHO05D006205 1.2e-54 216.9 171 60.2
PSO541G5829 Papaver somniferum HOM05D001775 ORTHO05D006205 1.2e-54 216.9 169 59.2
Cpa.g.sc26.151 Carica papaya HOM05D001775 ORTHO05D006205 1.6e-54 216.5 171 59.6
Potri.005G255100 Populus trichocarpa HOM05D001775 ORTHO05D006205 1.6e-54 216.5 169 57.4
Hund01795 Selenicereus undatus HOM05D001775 ORTHO05D006205 1.6e-54 216.5 169 56.8
CAN.G1330.2 Capsicum annuum HOM05D001775 ORTHO05D006205 4.7e-54 214.9 169 60.9
CsaV3_6G031380 Cucumis sativus L. HOM05D001775 ORTHO05D006205 1.0e-53 213.8 169 57.4
Gohir.A05G177800 Gossypium hirsutum HOM05D001775 ORTHO05D006205 3.0e-53 212.2 169 60.9
Gorai.009G186200 Gossypium raimondii HOM05D001775 ORTHO05D006205 4.0e-53 211.8 169 60.4
Gohir.D05G181200 Gossypium hirsutum HOM05D001775 ORTHO05D006205 5.2e-53 211.5 169 60.9
EL10Ac1g01895 Beta vulgaris HOM05D001775 ORTHO05D006205 6.7e-53 211.1 171 57.3
THA.LOC104813743 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 8.8e-53 210.7 169 58.0
Peaxi162Scf00680g00415 Petunia axillaris HOM05D001775 ORTHO05D006205 2.6e-52 209.1 169 60.4
Thhalv10019232m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 2.2e-51 206.1 169 57.4
CARHR021240 Cardamine hirsuta HOM05D001775 ORTHO05D006205 2.8e-51 205.7 169 58.0
Nitab4.5_0001756g0150 Nicotiana tabacum HOM05D001775 ORTHO05D006205 3.7e-51 205.3 170 60.6
Nitab4.5_0029491g0010 Nicotiana tabacum HOM05D001775 ORTHO05D006205 3.7e-51 205.3 170 60.6
C06p50600 Brassica napus HOM05D001775 ORTHO05D006205 4.8e-51 204.9 169 55.6
AL2G36510 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 6.3e-51 204.5 169 56.2
Sp5g31560 Schrenkiella parvula HOM05D001775 ORTHO05D006205 6.3e-51 204.5 169 56.2
BcaC08g47254 Brassica carinata HOM05D001775 ORTHO05D006205 1.4e-50 203.4 169 55.6
A07p42030 Brassica napus HOM05D001775 ORTHO05D006205 1.4e-50 203.4 169 55.6
BolC6t40085H Brassica oleracea HOM05D001775 ORTHO05D006205 1.4e-50 203.4 169 55.6
BraA07t31733Z Brassica rapa HOM05D001775 ORTHO05D006205 1.4e-50 203.4 169 55.6
Medtr3g115990 Medicago truncatula HOM05D001775 ORTHO05D006205 4.1e-50 201.8 205 51.2
BcaC08g47138 Brassica carinata HOM05D001775 ORTHO05D006205 5.3e-50 201.4 169 55.6
CARHR069960 Cardamine hirsuta HOM05D001775 ORTHO05D006205 7.0e-50 201.1 169 56.8
vmacro21778 Vaccinium macrocarpon HOM05D001775 ORTHO05D006205 7.0e-50 201.1 206 49.0
AT1G20816 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 9.1e-50 200.7 169 56.2
BcaB07g32074 Brassica carinata HOM05D001775 ORTHO05D006205 9.1e-50 200.7 169 56.8
PGR083G1854 Punica granatum HOM05D001775 ORTHO05D006205 9.1e-50 200.7 185 55.7
Thhalv10008937m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 1.6e-49 199.9 169 56.8
Sabra05G0197600 Salix brachista HOM05D001775 ORTHO05D006205 2.0e-49 199.5 169 55.0
C05p19360 Brassica napus HOM05D001775 ORTHO05D009111 2.7e-49 199.1 169 57.4
BolC5t30639H Brassica oleracea HOM05D001775 ORTHO05D006205 2.7e-49 199.1 169 57.4
HanXRQChr14g0427901 Helianthus annuus HOM05D001775 ORTHO05D006205 2.7e-49 199.1 189 52.9
AT1G76405 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 3.5e-49 198.7 169 54.4
Carub.0002s2331 Capsella rubella HOM05D001775 ORTHO05D006205 3.5e-49 198.7 169 55.0
HanXRQChr05g0144711 Helianthus annuus HOM05D001775 ORTHO05D006205 3.5e-49 198.7 197 48.7
BcaC05g25983 Brassica carinata HOM05D001775 ORTHO05D006205 4.5e-49 198.4 169 56.8
A06p16800 Brassica napus HOM05D001775 ORTHO05D009111 5.9e-49 198.0 169 56.2
MELO3C026523.2 Cucumis melo HOM05D001775 ORTHO05D006205 5.9e-49 198.0 194 50.0
Sp1g18510 Schrenkiella parvula HOM05D001775 ORTHO05D006205 5.9e-49 198.0 169 56.2
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 5.9e-49 198.0 154 60.4
BraA06t24788Z Brassica rapa HOM05D001775 ORTHO05D006205 1.0e-48 197.2 169 56.2
HanXRQChr15g0492581 Helianthus annuus HOM05D001775 ORTHO05D006205 1.0e-48 197.2 190 48.4
AL1G33820 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 1.3e-48 196.8 169 55.0
Carub.0001s2027 Capsella rubella HOM05D001775 ORTHO05D006205 2.2e-48 196.1 169 55.0
A07p28510 Brassica napus HOM05D001775 ORTHO05D006205 2.9e-48 195.7 170 55.3
Solyc04g082680.3 Solanum lycopersicum HOM05D001775 ORTHO05D006205 8.5e-48 194.1 169 56.2
Sopen04g036310 Solanum pennellii HOM05D001775 ORTHO05D006205 8.5e-48 194.1 169 56.2
BraA07t30489Z Brassica rapa HOM05D001775 ORTHO05D006205 1.1e-47 193.7 170 54.7
PGSC0003DMG400009918 Solanum tuberosum HOM05D001775 ORTHO05D006205 1.5e-47 193.4 169 55.6
Aa31LG4G6480 Aethionema arabicum HOM05D001775 ORTHO05D006205 2.5e-47 192.6 174 54.0
BcaC08g45531 Brassica carinata HOM05D001775 ORTHO05D006205 2.5e-47 192.6 169 53.8
C06p32060 Brassica napus HOM05D001775 ORTHO05D006205 2.5e-47 192.6 169 53.8
Lsat_1_v5_gn_2_1320 Lactuca sativa HOM05D001775 ORTHO05D006205 2.5e-47 192.6 189 50.3
BolC6t38332H Brassica oleracea HOM05D001775 ORTHO05D006205 3.2e-47 192.2 169 53.8
ECA232G0408 Erigeron canadensis HOM05D000593 ORTHO05D006205 4.2e-47 191.8 156 53.2
Atru.chr13.81 Acer truncatum HOM05D001775 ORTHO05D006205 9.4e-47 190.7 142 62.0
THA.LOC104811999 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 9.4e-47 190.7 169 53.8
ECA238G0508 Erigeron canadensis HOM05D001775 ORTHO05D006205 6.1e-46 188.0 191 49.2
Lsat_1_v5_gn_9_41801 Lactuca sativa HOM05D001775 ORTHO05D006205 6.1e-46 188.0 183 47.5
Ah.00g001090 Amaranthus hybridus HOM05D001775 ORTHO05D006205 8.0e-46 187.6 173 53.2
Rhsim06G0004200 Rhododendron simsii HOM05D001775 ORTHO05D006205 8.0e-46 187.6 238 43.3
BcaB02g07061 Brassica carinata HOM05D001775 ORTHO05D006205 1.8e-45 186.4 170 53.5
TWI56G1014 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 5.2e-45 184.9 202 47.0
ATR0807G198 Amborella trichopoda HOM05D001775 ORTHO05D006205 1.2e-44 183.7 170 52.9
HPP92_015233 Vanilla planifolia HOM05D001775 ORTHO05D006205 3.4e-44 182.2 169 51.5
Manes.05G125900 Manihot esculenta HOM05D001775 ORTHO05D006205 5.0e-40 168.3 136 58.1
COL.COLO4_36626 Corchorus olitorius HOM05D001775 ORTHO05D006205 1.5e-39 166.8 141 56.7
Duzib116G0384 Durio zibethinus HOM05D001775 ORTHO05D006205 4.2e-39 165.2 169 51.5
Psat5g008840 Pisum sativum HOM05D001775 ORTHO05D006205 4.2e-39 165.2 151 51.7
FAN18G0260 Fragaria x ananassa HOM05D001775 ORTHO05D006205 2.1e-38 162.9 126 56.3
Os02g0832200 Oryza sativa ssp. japonica HOM05D001775 ORTHO05D006205 3.0e-37 159.1 186 46.2
Dinv31976 Davidia involucrata HOM05D001775 ORTHO05D000295 5.7e-36 154.8 168 47.0
Zm00001eb259570 Zea mays HOM05D001775 ORTHO05D006205 3.7e-35 152.1 175 46.3
CDE05G0488 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 4.9e-35 151.8 146 48.6
Pp3c16_8850 Physcomitrium patens HOM05D001775 ORTHO05D006205 4.9e-35 151.8 169 42.0
Mapoly0001s0026 Marchantia polymorpha HOM05D001775 ORTHO05D006205 2.4e-34 149.4 169 40.8
CANSAT25G3735 Cannabis sativa HOM05D001775 ORTHO05D006205 1.6e-33 146.7 101 62.4
Lj4A6T36 Lonicera japonica HOM05D001775 ORTHO05D006205 2.0e-33 146.4 112 58.9
Nn5g31022 Nelumbo nucifera HOM05D001775 ORTHO05D006205 3.9e-32 142.1 169 45.6
CDE05G0091 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 2.5e-31 139.4 174 41.4
Duzib041G0706 Durio zibethinus HOM05D001775 ORTHO05D006205 2.8e-30 136.0 169 43.2
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 4.7e-30 135.2 126 52.4
PRCOL_00001546 Prasinoderma coloniale HOM05D001775 ORTHO05D006205 7.5e-28 127.9 169 36.7
MCO07G511 Micromonas commoda HOM05D001775 ORTHO05D006205 1.1e-26 124.0 171 38.0
arahy.Tifrunner.gnm1.ann1.5GY58N Arachis hypogaea HOM05D001775 ORTHO05D006205 1.4e-26 123.6 98 59.2
CBR_g44541 Chara braunii HOM05D001775 ORTHO05D006205 1.0e-24 117.5 169 33.7
SMO117G0070 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 1.3e-24 117.1 184 34.8
arahy.Tifrunner.gnm1.ann1.3KDH9X Arachis hypogaea HOM05D001775 ORTHO05D006205 3.3e-23 112.5 92 55.4
SMO114G0103 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 9.5e-23 110.9 163 35.0
VMungo1309G1483 Vigna mungo HOM05D001775 ORTHO05D006205 2.1e-22 109.8 163 39.9
AagrBONN_evm.TU.Sc2ySwM_344.4857 Anthoceros agrestis HOM05D001775 ORTHO05D006205 1.1e-21 107.5 142 34.5
HPP92_015234 Vanilla planifolia HOM05D001775 ORTHO05D006205 1.8e-21 106.7 110 49.1
AagrBONN_evm.TU.Sc2ySwM_362.1823 Anthoceros agrestis HOM05D001775 ORTHO05D006205 1.3e-19 100.5 171 32.7
arahy.Tifrunner.gnm1.ann1.S8I99S Arachis hypogaea HOM05D001775 ORTHO05D006205 4.1e-18 95.5 87 57.5
Pp3c5_19490 Physcomitrium patens HOM05D001775 ORTHO05D006205 1.2e-17 94.0 98 41.8
Nitab4.5_0005347g0040 Nicotiana tabacum HOM05D001775 ORTHO05D006205 1.9e-15 86.7 52 67.3
arahy.Tifrunner.gnm1.ann1.FUJ1Q4 Arachis hypogaea HOM05D001795 ORTHO05D006205 4.9e-11 72.0 68 47.1


User provided reference genes

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